chp1 (chp1,LOC107724623,LOC107734301)


Basic Information

Item Value
gene id chp1
gene name chp1,LOC107724623,LOC107734301
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17776719 ~ 17788131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255644.1
CGGACGTCACGTAGATCCAGTCCGACCAACCTTTAGCTTAGCCTTTCAAACTCTTCCGTTATTGTGCTAGATTTGATTCGGACCGCTCCCGAACCGGTCGCGTTTAAGAAGCTGGAGGTTAATAACCCTGCCCAGACGGTTGTGAAGGACGTCCGTTCATCCGACAGCTTTAAAGAGCTCCGTGTTCAGCGACCAGGAGTGAATTTCATGCGTTAGCCCGAGGTGATCTCCAGAAGAAACAGCAGTCATGGGCTCCAGAGCTTCATCTTTACTCAGAGAAGAGGACATTGAAGAAATCAAGAAAGAAACTGGATTCTCCCACAGTCAGATCACTCGCCTCTACAGCCGCTTTCACAGTCTCGATAAAGGAGAAAACGGAGCGCTCAGTCGAGAAGACTTCCAGAGGATTCCCGAGTTGGCCATAAATCCTCTTGGCGATCGAATAATAAATGCCTTCTTCCCAGAGGGCGAGGATCAGGTGAACTTCAGGGGCTTCATGAGGACTCTGGCTCACTTCCGTCCCGTGGAGGATAACGAGAAAAACAAAGTCCCGGCTTCAGGGGAACCGCTCAACAGCAGGACCAACAAACTTCTCTTTGCTTTTCGGTTATATGACCTCGACAGAGATGACAAGATTTCTAGAGATGAGCTTCTACAGGTTTTGAGGATGATGGTGGGCGTGAATATTTCAGACGAACAGCTTGGAAGCATTGCAGACAGGACCATACAGGAAGCCGACACCAACGGAGACATGTGTATCTCCTTCAGCGAGTTCACCAAGGTATTGGAAAAAGTGGATGTCGAACAGAAGATGAGCATCCGCTTCCTTCACTGAAAACCGAACGCGTTCTGAACTCTGATTTGGAGACCATCGGTGTCAATAGAATTAAGACACGCCCCCTGATTCTTCCCTCTGTGGGCTGATTGATCATGTCGTCGTGGTTACGGTCGTTCCATTCGTCTATCACTCTTGAGTTGCTGTTGCGCTAGCAGGCCGGGTCCAGTGCCTTCGCTGTTTTCAAAAGCCACAGTGACTTTTATCTTGTGAAATTGTGTTCGTTGTAGCTGTGAAAGCAGCTGACTAAAACTTTCCAAACGCTTTTTGTCATGCCCATTAATCACCGTCCCAAAGGCCAAATCTGCGGAGGAGCTTTCCTTCTCACCCATCAAAATGAAATTTCGCTTCTCAAAATTACCTCGTTGTATGAGTGCATAAGGGTGCGTTGCGTTctcataatttataattatctTAAATCAACGCATAAGAGGGAGTGAAATGGCGAATGTTGCGTTTAaccccaaaaaatgtatttgagtgggtttttctttttaaaggccCAGTATATAATAAGATAAGCAATTCAGTTGAGTATTTATAGTTTCCCCACACTCTCGTTTCATTACAAATGAATAGATGCGATTAAATTTAGGTACAATTTTTAAAGTTGAAGCGTGTCATTTTGTCTCAATGTGGAACCAAATGAAACTTTAGATTTGTTTATGCATCCAAATTTGACGTGAAAGCATTACCCTGAGTATTAAACGGTACGAGATGAAGTTGTGCGTCGTTCATCTCATCTATCTTAAATAGTTTGCTCGGCAGACAACagttgaaggaaaaaaaatcagaccTTGCATTCGAAAGATGGGCTCAAGGTATATAGAGGGACCATAATATAGCAGCTCGtgctgcatgtatttatttaatttcaactaATTTAGAACTATGGAAGCCCATAAagataattgcaacttttttttctcgcaTTTCAGACCAACTCATAATTGCTAGACATAAGAGAGGAAAAAGTGGCAgttaccttttcattttttttttttttttattcggtGGCGAAAATAGGCTTCAATATTGTCACTTTGAAACTTTTAGCAACACTACAATATTTTGAACAGCCAAATACAACTAATTTCTtctagaaaatgtaaaaaaaccttTGCAGTTCTGTTTAGAAATAACTGCCTTCGCCTTTTTAGCTCTCATTCTTTGTCAGTTTCGAAATTGATTTAGCGTTGGGTGTGATTTATGACGTATGTTCTCAGAGTTGTCATGcatcattatttataaaaaagggTACTTGAAGCCAAACGTCACTCGATTATTTGTCCGTTGATTGAACACTTAAGCTGTTTAGTGTGGCAACTACAGTCTGTTGCATTTTAATGCTTATATTCTTTCGCTTTATAGATCTATGAACAAAATCAACGTTACGTGCCCTTGTCCCTGACGGATGTAAACACTGATTGTTTGATTATCAATGCTACAATTAAATCCACGTATCGTTCGCCGATACGCTTCTTAC

Function

symbol description
chp1 Predicted to enable calcium ion binding activity. Is expressed in pronephric duct and pronephros. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1).

NR:

description
PREDICTED: calcineurin B homologous protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K17610 CHP, CHP1; calcineurin B homologous protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255644.1 True 2321 mRNA 0.42 7 17776719 17788131

Neighbor

gene id symbol gene type direction distance location
khdrbs1a khdrbs1a,LOC107597656,LOC107679143,LOC107724614,LOC107561769,LOC107734287 coding downstream 2868 17769381 ~ 17773851 (-)
LOC122356377 NA coding downstream 11459 17752801 ~ 17765260 (-)
glo1 glo1,LOC107667967,LOC107734292,LOC107679178,LOC108426138,LOC103022823,LOC104919745 coding downstream 39759 17733938 ~ 17736960 (-)
btbd9 btbd9,LOC107724625,LOC107566514,LOC107679175,LOC107734308,LOC107667966,LOC107561768 coding downstream 45732 17722431 ~ 17730987 (-)
trnav-aac_26 NA coding downstream 57013 17719634 ~ 17719706 (-)
runx3 runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963 coding upstream 12853 17800984 ~ 17853373 (-)
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding upstream 171906 17960037 ~ 17964870 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding upstream 184745 17972876 ~ 17980109 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding upstream 285600 18073731 ~ 18080606 (-)
LOC122356930 NA coding upstream 585737 18373868 ~ 18380023 (-)
G94608 NA non-coding downstream 54419 17721728 ~ 17722300 (-)
LOC122356952 NA non-coding downstream 104196 17632249 ~ 17672523 (-)
G94516 NA non-coding downstream 746656 17022103 ~ 17030063 (-)
G94511 NA non-coding downstream 761062 16984506 ~ 17015657 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding downstream 1181988 16593425 ~ 16594731 (-)
G94619 NA non-coding upstream 2753 17790884 ~ 17791890 (-)
LOC122356989 NA non-coding upstream 103906 17892037 ~ 17900115 (-)
LOC122356279 NA non-coding upstream 115066 17903197 ~ 17910716 (-)
G94663 NA non-coding upstream 152272 17940403 ~ 17994249 (-)
G94672 NA non-coding upstream 182082 17970213 ~ 17970976 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 389713 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1350184 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1484340 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1607515 16009687 ~ 16169204 (-)
G94216 NA other downstream 1891497 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 757440 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 1169572 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1497899 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 2074399 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 2121064 19909195 ~ 19921669 (-)

Expression


Co-expression Network