runx3 (runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963)


Basic Information

Item Value
gene id runx3
gene name runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17800984 ~ 17853373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255705.1
CTCAGACATGCGACTGACAGGTTGTTACCACGGAGATCACCAATGCGAGAGAGGCAGACACCTGAACTTTCAACTACCTAACTAAAACCACGTCGAGAGTACAACCACCACTactagagagacagacagacaaccgTCATAGGCTGAAGTCGGTGAGGCGACGGAGAGGCCAGCTCTTTTCCCTCCCGAGCGGGACACATGGCTTCAAACAGCATCTTCGACACATTCTCCAGCTACTCGCCCAGTTTACTGCGAGACCCGAGCACGAGCAGACGGTTCACGCCGCCCTCCGCTTCGTTCCCGTGCGCTAAAGTGCCCGAAAGCCCGAGTATGACCGCACCGGGGCCGCTGCGGCCCGGCCGGCCGCTGGAGAGCCGCTCCGTGGTGGACGTTCTGGCGGATCACGCCGGAGAGCTGGTGCGGACCGACAGCCCCAACTTTCTCTGCTCGGTGCTGCCGTCGCACTGGAGGTGCAACAAAACGCTGCCCGTGGCTTTTaagGTGGTGGCTCTGGGTGACGTTCCTGACGGGACCCTGGTCACGGTGATGGCTGGAAACGATGAGAATTATTCCGCGGAGCTGAGAAACGCGTCTGCCGTCATGAAGAACCAGGTGGCGCGATTCAACGACCTGCGCTTCGTGGGCAGGAGCGGCAGAGGAAAGAGCTTCACTTTGACCATCACTGTGTTCACTGGACCACCCCAGGTCGCCACATACCACCGCGCGATTAAAGTCACCGTGGATGGACCTCGAGAACCGAGACGTCACCGCGTGAAGCCGGACGACCCTCATAAGCAGTACACCGATCGCCTGAGTGACATCGAGCGTTTCCAGAGGGCCAGTCTGAGAATGAACCCTGGCAACGGGACCGCCCGCTCCCACCAGACCCATTACAACCCCTCCAGCACCACACAGATACCAGcattatgGCCAGATCAGATTGACCCTCCTGCACTGAAGACTTGCAAAGTTGAAGACGACTTACGCTGGTCAAGTACGGATCTGTTCCCTCAGAGGACGTCCTTCCCGTCTCTATCTCCATTAACAGCTCCTCGGTTCTCAGATTCACACATGCATTATCCGGGTCCCTTCACCTACTCTGCAAACCCGTCCAGCACCGGAATCGGTGGTCTCAGCGTGGCCGGGATGCCCACCTCCAGCCGCTACCACACCTACCTGCCTCCTCCATACCCCGGCAACCAGAACCAGAACTCCCACTTCCAGACCAACTCCTCGCCGTACCACCTGTACTACGGCACCGGATCCGGCTCCTACCAGTTCTCCATGGTTCCCACCGGCGGCACCGGATCGGGAGGTGACAGGTCGCCCACCCGCATGCTGACGTCCTGCACCGCGGCCGGCGGGGCCGGGGGCACGGCGGGCGGAAACAACAGCCTGCTCAACGCCAGCCTCGGCAACCAGAGCGACGGCGTGGATGCTGACGGAAGCCACAGCAACTCGCCCACAGCCATGAGTGCGTCCACACGCATAGACGAGTCCGTCTGGAGGCCTTACTGAGAAAACAGGAGACTGAGAGAAGTCGCTGAAGTTTAGAGTAGAGCTGAAAATCTTGCATGTTTGATCGTTCTGTATCTTCTATGACATGTCGATTGCTTCTAAGACCACCAAAGTGAACCCGCGAGAAAATGTGTCTGGACAGAAATGGACCTCCGCTGATCAAAACTGAAGGAGGACAGAAGTCTCACAGGAAAATGAGGTGTATATAGAAAGATTATAATTACGAAAAGGCATCCCATAGTAATATATCAGCAACTTTTCTTAccaaaaaagctgaaaaaccaAAGAGAACACGAGCCTGTATCTGAAAAAAGCCAATTTATCCAGCCTTACAAACCAATCTGCCTGAACGCTGTAAATCCCAGAGTGCTTCGCAACCATGAAAGCATGTCGTGCAGACAATATGAGAAAGCTTCACAGAGCTGCAAGACTGTGGGACTTTTAATGTGTAAATACgacaatgaacaaaaatgttacCCACAAGTTTCAGGTACTTTCCAAACTTGCCGAAATAGTCTTGAACTGGTGAGATGTGATCAAGCGTGGAGCTTTGTGAGATGCAATGTCAATTTCATAGAAACAGATTTTAGGGTGAATATCACTGAACCTGCCAGGAACATATTCAGGTCATATTTAATgagtaattacattttgcatgaagaaaatgatgctaattgtttttttaattttttacaaacattcgtttttgcatttttcattgtGGCATTGTTTTCATCGAAATGAAGCGCATTTGACCCCTATTATTGTAGcgcaataaaataatgatatattatttcatttgcaaatcatctaaatttacataaacatagcATCGTTTtcattatgcaaaaatattttttgcttttattttagggtgaaaTGTGATCTGGATGAGCTTTCATGAGATTCACCCTTTAGCTGCGGGTCCTCGATTTGTTGAAACGCAAAACAGTGTCTATAATCCAAAGACAGACAggtgtttgattttttttttcctcgcttCATGCCAAAATCACGAACAATTTATTCGTCTCTGAACTTGTGGAGACTTGCCTTTTTTGGAATAGtttttagagtatttttttttctcagtgttgATCGCTTTTTATGACTTTCTTCAGACTATTCGTTTGAGCTCAGTTTTctggtttgtgtgttttttttatttttatttgaatttttttttttttatttattcgagCCAAAGAGAATGCGTTCCTATTTTGGATCGTTTCCGGGTCATAAACATTTCCAGTTTTTGTTTTcggtctctttttttttttccaatcttttggattttctttgttttaatataaaattggAATTTGTGCTACTGTAATATATTCTTTCTAAATTATACAAAAGTTTTAACGTAATGCCTATGTTTTCCAATGCAGCtttaatgcactaaaacatttatttaagagGTTATATGTCCTTGTTAAACCACATAATAGAGACATTCTTATACCAGATTGAATTCCACATGATATTTAGTCATGTGCCTGAAAGGCCTCAACCATCGCAAGCCAAAGAATCCAACAATCACCTGTTGTCATTCCACGTCTCTAAAGTGTGAAAAATATGTTGCTCTAAGCACCTACATTATGTGTCTATTTTTCTTACCTTGTTCTTGGAATGACTGAAATCGGAGACAATAATTGGTGCACGTTTGAAAGCAGATCGTCTGTGATTATTTGAATAACAAAACCATGCACAAGCTCATACAAGGGGGTAAAGTGgccgtgacacacacacacacacacatacatccgCGTAACAGGTGTAAGTGAATATTTCAGCACATAACCCAGAGGTTTTTTCCCATGCTCACACCTGCTGCCATCACCTGAGGGCCGAGGGCCCCAAAAGAGCAAAGGAAACAGGTAGAAAGATGGATGAAGAGAGACGTATCTCCTTTCGCAATCGCTGGTCATCCTTCAGGCCTTGTTATCCAAGCAGAAGTGCCCGTGTTCAGTTTGATTCACGGCCGCTTTGATGCCTTTATGTGGGCGGTTATTTTCCTTCCCATTGTGCCTCTGCTTGATTAAGGCCCCAAGCTGCAGGCTACAGGAAAGATGGGTTTAAATGGGAGCTGGTCTAGTTACACCGATTCTCTCCTGCAAAGACTTCTGGGTAATAGAAACCCTGGGTAAACTATTGCTTCTGTGTCGTATGGTGATTCTCTCTCAGTGCCTCGGTCTGGATCTACTAACGTCTGTGGATATCAAATCCTGTTCGGTGTAACGGCTTTATTTCAAGTTTGATTGTCGATTATGGATCACGAATCCAAATTAAGATTTGCTGCCCCAAAATCAGACCCAAAACACATCTATTTATTTCCGCTGTATCAGTACTGATTGCGCGTTGCGTTGATATCAAGGTTCTGTTTCAAAACCtaacttttgaaaataaaggttctttactgGCATCGAAggtgaagaaacaaaaaaatcggAAAACGTCCTTTAGATCATTAAAAACGTCTTTGACTacgagttaaaaaaaaactatttgctgAAAAATTCTTCAGGAAagcaaaaaacgtttttatatgCAATTCAGCAAAACACCCTTTTAGAACCTTTATTGTTAAGAGTGTAGTGCGCTCCCTATGTAGGCAGCACAGAATCTGTTCCAAAGAAGTAAGCGGTGTAAACACGCCTGTGGGTTTCTCCCTGTGTGAAAGCGTTCTGAATCAGTCACTTGTTTGAAGGCAGAAGCCTATGTAAGCAGCTGCAGGTTTTGAAACACAACCCAAATGTTGCCAGTGAAGTGAATATCACTGAAGGCACTCATCAGTCGGTGGTGTTTGTAAAATGCACAGGTCCTAAAAGAGCTAAAAAGCACAACACACTCCTGTTGAACAAATTGTCTTTTTCACTCGTTGTACGTTTGTAATTTTGGTTCCCGAAATACGCTCTTTTGTTCCTTCATTGTGTGCTAATGATGTagttttttatgcattttaattaaaaaaagatcagGA
>XM_043255706.1
tctttctctcttactctctctcgctctcaccACACGGCACATATGCAGTTCTGTTAGTCGGCTTGTGGCGAAAGATTCCTGTGGCACTCTCAAACCCCAAATTCTTGGTTGCAGACAGTCTATGTAGTTTctctatttctctttctctgactGTCGTTCTCTCAGGCTGAAGTCGGTGAGGCGACGGAGAGGCCAGCTCTTTTCCCTCCCGAGCGGGACACATGGCTTCAAACAGCATCTTCGACACATTCTCCAGCTACTCGCCCAGTTTACTGCGAGACCCGAGCACGAGCAGACGGTTCACGCCGCCCTCCGCTTCGTTCCCGTGCGCTAAAGTGCCCGAAAGCCCGAGTATGACCGCACCGGGGCCGCTGCGGCCCGGCCGGCCGCTGGAGAGCCGCTCCGTGGTGGACGTTCTGGCGGATCACGCCGGAGAGCTGGTGCGGACCGACAGCCCCAACTTTCTCTGCTCGGTGCTGCCGTCGCACTGGAGGTGCAACAAAACGCTGCCCGTGGCTTTTaagGTGGTGGCTCTGGGTGACGTTCCTGACGGGACCCTGGTCACGGTGATGGCTGGAAACGATGAGAATTATTCCGCGGAGCTGAGAAACGCGTCTGCCGTCATGAAGAACCAGGTGGCGCGATTCAACGACCTGCGCTTCGTGGGCAGGAGCGGCAGAGGAAAGAGCTTCACTTTGACCATCACTGTGTTCACTGGACCACCCCAGGTCGCCACATACCACCGCGCGATTAAAGTCACCGTGGATGGACCTCGAGAACCGAGACGTCACCGCGTGAAGCCGGACGACCCTCATAAGCAGTACACCGATCGCCTGAGTGACATCGAGCGTTTCCAGAGGGCCAGTCTGAGAATGAACCCTGGCAACGGGACCGCCCGCTCCCACCAGACCCATTACAACCCCTCCAGCACCACACAGATACCAGcattatgGCCAGATCAGATTGACCCTCCTGCACTGAAGACTTGCAAAGTTGAAGACGACTTACGCTGGTCAAGTACGGATCTGTTCCCTCAGAGGACGTCCTTCCCGTCTCTATCTCCATTAACAGCTCCTCGGTTCTCAGATTCACACATGCATTATCCGGGTCCCTTCACCTACTCTGCAAACCCGTCCAGCACCGGAATCGGTGGTCTCAGCGTGGCCGGGATGCCCACCTCCAGCCGCTACCACACCTACCTGCCTCCTCCATACCCCGGCAACCAGAACCAGAACTCCCACTTCCAGACCAACTCCTCGCCGTACCACCTGTACTACGGCACCGGATCCGGCTCCTACCAGTTCTCCATGGTTCCCACCGGCGGCACCGGATCGGGAGGTGACAGGTCGCCCACCCGCATGCTGACGTCCTGCACCGCGGCCGGCGGGGCCGGGGGCACGGCGGGCGGAAACAACAGCCTGCTCAACGCCAGCCTCGGCAACCAGAGCGACGGCGTGGATGCTGACGGAAGCCACAGCAACTCGCCCACAGCCATGAGTGCGTCCACACGCATAGACGAGTCCGTCTGGAGGCCTTACTGAGAAAACAGGAGACTGAGAGAAGTCGCTGAAGTTTAGAGTAGAGCTGAAAATCTTGCATGTTTGATCGTTCTGTATCTTCTATGACATGTCGATTGCTTCTAAGACCACCAAAGTGAACCCGCGAGAAAATGTGTCTGGACAGAAATGGACCTCCGCTGATCAAAACTGAAGGAGGACAGAAGTCTCACAGGAAAATGAGGTGTATATAGAAAGATTATAATTACGAAAAGGCATCCCATAGTAATATATCAGCAACTTTTCTTAccaaaaaagctgaaaaaccaAAGAGAACACGAGCCTGTATCTGAAAAAAGCCAATTTATCCAGCCTTACAAACCAATCTGCCTGAACGCTGTAAATCCCAGAGTGCTTCGCAACCATGAAAGCATGTCGTGCAGACAATATGAGAAAGCTTCACAGAGCTGCAAGACTGTGGGACTTTTAATGTGTAAATACgacaatgaacaaaaatgttacCCACAAGTTTCAGGTACTTTCCAAACTTGCCGAAATAGTCTTGAACTGGTGAGATGTGATCAAGCGTGGAGCTTTGTGAGATGCAATGTCAATTTCATAGAAACAGATTTTAGGGTGAATATCACTGAACCTGCCAGGAACATATTCAGGTCATATTTAATgagtaattacattttgcatgaagaaaatgatgctaattgtttttttaattttttacaaacattcgtttttgcatttttcattgtGGCATTGTTTTCATCGAAATGAAGCGCATTTGACCCCTATTATTGTAGcgcaataaaataatgatatattatttcatttgcaaatcatctaaatttacataaacatagcATCGTTTtcattatgcaaaaatattttttgcttttattttagggtgaaaTGTGATCTGGATGAGCTTTCATGAGATTCACCCTTTAGCTGCGGGTCCTCGATTTGTTGAAACGCAAAACAGTGTCTATAATCCAAAGACAGACAggtgtttgattttttttttcctcgcttCATGCCAAAATCACGAACAATTTATTCGTCTCTGAACTTGTGGAGACTTGCCTTTTTTGGAATAGtttttagagtatttttttttctcagtgttgATCGCTTTTTATGACTTTCTTCAGACTATTCGTTTGAGCTCAGTTTTctggtttgtgtgttttttttatttttatttgaatttttttttttttatttattcgagCCAAAGAGAATGCGTTCCTATTTTGGATCGTTTCCGGGTCATAAACATTTCCAGTTTTTGTTTTcggtctctttttttttttccaatcttttggattttctttgttttaatataaaattggAATTTGTGCTACTGTAATATATTCTTTCTAAATTATACAAAAGTTTTAACGTAATGCCTATGTTTTCCAATGCAGCtttaatgcactaaaacatttatttaagagGTTATATGTCCTTGTTAAACCACATAATAGAGACATTCTTATACCAGATTGAATTCCACATGATATTTAGTCATGTGCCTGAAAGGCCTCAACCATCGCAAGCCAAAGAATCCAACAATCACCTGTTGTCATTCCACGTCTCTAAAGTGTGAAAAATATGTTGCTCTAAGCACCTACATTATGTGTCTATTTTTCTTACCTTGTTCTTGGAATGACTGAAATCGGAGACAATAATTGGTGCACGTTTGAAAGCAGATCGTCTGTGATTATTTGAATAACAAAACCATGCACAAGCTCATACAAGGGGGTAAAGTGgccgtgacacacacacacacacacatacatccgCGTAACAGGTGTAAGTGAATATTTCAGCACATAACCCAGAGGTTTTTTCCCATGCTCACACCTGCTGCCATCACCTGAGGGCCGAGGGCCCCAAAAGAGCAAAGGAAACAGGTAGAAAGATGGATGAAGAGAGACGTATCTCCTTTCGCAATCGCTGGTCATCCTTCAGGCCTTGTTATCCAAGCAGAAGTGCCCGTGTTCAGTTTGATTCACGGCCGCTTTGATGCCTTTATGTGGGCGGTTATTTTCCTTCCCATTGTGCCTCTGCTTGATTAAGGCCCCAAGCTGCAGGCTACAGGAAAGATGGGTTTAAATGGGAGCTGGTCTAGTTACACCGATTCTCTCCTGCAAAGACTTCTGGGTAATAGAAACCCTGGGTAAACTATTGCTTCTGTGTCGTATGGTGATTCTCTCTCAGTGCCTCGGTCTGGATCTACTAACGTCTGTGGATATCAAATCCTGTTCGGTGTAACGGCTTTATTTCAAGTTTGATTGTCGATTATGGATCACGAATCCAAATTAAGATTTGCTGCCCCAAAATCAGACCCAAAACACATCTATTTATTTCCGCTGTATCAGTACTGATTGCGCGTTGCGTTGATATCAAGGTTCTGTTTCAAAACCtaacttttgaaaataaaggttctttactgGCATCGAAggtgaagaaacaaaaaaatcggAAAACGTCCTTTAGATCATTAAAAACGTCTTTGACTacgagttaaaaaaaaactatttgctgAAAAATTCTTCAGGAAagcaaaaaacgtttttatatgCAATTCAGCAAAACACCCTTTTAGAACCTTTATTGTTAAGAGTGTAGTGCGCTCCCTATGTAGGCAGCACAGAATCTGTTCCAAAGAAGTAAGCGGTGTAAACACGCCTGTGGGTTTCTCCCTGTGTGAAAGCGTTCTGAATCAGTCACTTGTTTGAAGGCAGAAGCCTATGTAAGCAGCTGCAGGTTTTGAAACACAACCCAAATGTTGCCAGTGAAGTGAATATCACTGAAGGCACTCATCAGTCGGTGGTGTTTGTAAAATGCACAGGTCCTAAAAGAGCTAAAAAGCACAACACACTCCTGTTGAACAAATTGTCTTTTTCACTCGTTGTACGTTTGTAATTTTGGTTCCCGAAATACGCTCTTTTGTTCCTTCATTGTGTGCTAATGATGTagttttttatgcattttaattaaaaaaagatcagGA

Function

symbol description
runx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and hemopoiesis. Predicted to be located in nucleus. Is expressed in several structures, including Rohon-Beard neurons; digestive system; ganglia; oral epithelium; and skeletal element. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); female reproductive organ cancer (multiple); lung non-small cell carcinoma; pancreatic cancer; and urinary bladder cancer. Orthologous to human RUNX3 (RUNX family transcription factor 3).

NR:

description
runt-related transcription factor 3-like isoform X4

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09279 RUNX3, AML2; runt-related transcription factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255705.1 False 4507 mRNA 0.45 8 17800984 17853373
XM_043255706.1 True 4530 mRNA 0.45 7 17800984 17853186

Neighbor

gene id symbol gene type direction distance location
chp1 chp1,LOC107724623,LOC107734301 coding downstream 12853 17776719 ~ 17788131 (-)
khdrbs1a khdrbs1a,LOC107597656,LOC107679143,LOC107724614,LOC107561769,LOC107734287 coding downstream 27133 17769381 ~ 17773851 (-)
LOC122356377 NA coding downstream 35724 17752801 ~ 17765260 (-)
glo1 glo1,LOC107667967,LOC107734292,LOC107679178,LOC108426138,LOC103022823,LOC104919745 coding downstream 64024 17733938 ~ 17736960 (-)
btbd9 btbd9,LOC107724625,LOC107566514,LOC107679175,LOC107734308,LOC107667966,LOC107561768 coding downstream 69997 17722431 ~ 17730987 (-)
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding upstream 106664 17960037 ~ 17964870 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding upstream 119503 17972876 ~ 17980109 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding upstream 220358 18073731 ~ 18080606 (-)
LOC122356930 NA coding upstream 520495 18373868 ~ 18380023 (-)
ftr69 LOC107597643,LOC107679211 coding upstream 526662 18380035 ~ 18383710 (-)
G94619 NA non-coding downstream 9094 17790884 ~ 17791890 (-)
G94608 NA non-coding downstream 78684 17721728 ~ 17722300 (-)
LOC122356952 NA non-coding downstream 128461 17632249 ~ 17672523 (-)
G94516 NA non-coding downstream 770921 17022103 ~ 17030063 (-)
G94511 NA non-coding downstream 785327 16984506 ~ 17015657 (-)
LOC122356989 NA non-coding upstream 38664 17892037 ~ 17900115 (-)
LOC122356279 NA non-coding upstream 49824 17903197 ~ 17910716 (-)
G94663 NA non-coding upstream 87030 17940403 ~ 17994249 (-)
G94672 NA non-coding upstream 116840 17970213 ~ 17970976 (-)
G94709 NA non-coding upstream 254057 18107430 ~ 18107801 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 413978 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1374449 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1508605 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1631780 16009687 ~ 16169204 (-)
G94216 NA other downstream 1915762 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 692198 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 1104330 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1432657 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 2009157 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 2055822 19909195 ~ 19921669 (-)

Expression


Co-expression Network