sft2d1 (sft2d1,LOC107660214,LOC102776618)


Basic Information

Item Value
gene id sft2d1
gene name sft2d1,LOC107660214,LOC102776618
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23447333 ~ 23464851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255790.1
GCAATACGGGTGGGGAAAAGTAACGTCTGATTTGTGTCAATGCTGAACTTCGAGGAAGTGTTGAATAATTGCAACTGAGCACTGTTTCACCTGACGAGCAACGATGGACAAGTTGCGTCGTGTATTAAGTGGACGAGAGGAAAATGAAGAAGTGGGACTTACAGCGCAGATCATGGACGGCACAACACTCAGTTTCAGCACACGGCTGAAGTggtttgtcatttgttttgcaGGGGGTGTCCTGTGCTCAATACTCGGAACCGCACTCCTCTTTTTACCCAAAGCTGGTGTTAATTTGTTTGCTGTATTCTACACCCTCGGAAATATCGCAGCAATTTCTAGCACCTGTTTCCTAATGGGCCCATTCAAACAGCTGAAGCGAATGTTTGAGCCCACCAGACTCATAGCTACTATTATGATGCTGCTATTCCTTGTGTTGACGTTATGCGCAGTGTTTTGGTGGGGCAAAAAGGGTTTGGCGATCATCTTCTGCATTTTGCAATTTTTGGCTATGACGTGGTACAGCATCTCCTACATTCCATTTGCACGGGATGCTGTTATTAAGTGTTTCACCTCCTGTTTGGGCTGAACTATCCAGTATTTCAGGTCTGCACAGTAAATATggaagaaacaaaacaagtttttctctttcatctcCAAACAACACTGTCCTCCTTGACcttaaaacatttcctcttttgtcttaatgtaataattttaaatgaacattgtgTAATATTAAGAGTGAATgtgtaatatttgcatttattacgagcctaatttctttttttatctttaaggcgtttttgttttccttttttttttggtttgcgtGTGGCtgataaatgcttaaaatatgatACActgccagtaaaaaaaaaaaaaaaaaaaagtgccttgTGATGTTTATGAATGAACTTATTTGCTACTGTTCAGTTTTGTACAGAAAAGGAATTGCATTTCTAccaaatatattaacaaaaaaatgaaagaaaagccTTTTCGTGCGATACCACGCACCAAACGAATAAAACGTGTTCTTTCATTGGTTTTTTGATGCTATTTGACTGTTGAACAGAGTTAATATGTCATAATCTTCTGACTTATGCGTTCAGAATAATGATGAGTATAATGCTGGTTGTTTGAGCCCAGGGCAACTCAGACAGCTGTCTCACCGCTTTCTCTGGAGATCAGATGATGGTATTCTATCCATCtatgtgctcttttttttgtgtttcatctACAATGTCTCTGTTTAATAAACCTATGCCATCATA
>XM_043255791.1
ATGCTGAACTTCGAGGAAGTGTTGAATAATTGCAACTGAGCACTGTTTCACCTGACGAGCAACGATGGACAAGTTGCGTCGTGTATTAAGTGGACGAGAGGAAAATGAAGAAGTGGGACTTACAGCGCAGGATCATGTGAGATCATGGACGGCACAACACTCAGTTTCAGCACACGGCTGAAGTggtttgtcatttgttttgcaGGGGGTGTCCTGTGCTCAATACTCGGAACCGCACTCCTCTTTTTACCCAAAGCTGGTGTTAATTTGTTTGCTGTATTCTACACCCTCGGAAATATCGCAGCAATTTCTAGCACCTGTTTCCTAATGGGCCCATTCAAACAGCTGAAGCGAATGTTTGAGCCCACCAGACTCATAGCTACTATTATGATGCTGCTATTCCTTGTGTTGACGTTATGCGCAGTGTTTTGGTGGGGCAAAAAGGGTTTGGCGATCATCTTCTGCATTTTGCAATTTTTGGCTATGACGTGGTACAGCATCTCCTACATTCCATTTGCACGGGATGCTGTTATTAAGTGTTTCACCTCCTGTTTGGGCTGAACTATCCAGTATTTCAGGTCTGCACAGTAAATATggaagaaacaaaacaagtttttctctttcatctcCAAACAACACTGTCCTCCTTGACcttaaaacatttcctcttttgtcttaatgtaataattttaaatgaacattgtgTAATATTAAGAGTGAATgtgtaatatttgcatttattacgagcctaatttctttttttatctttaaggcgtttttgttttccttttttttttggtttgcgtGTGGCtgataaatgcttaaaatatgatACActgccagtaaaaaaaaaaaaaaaaaaaagtgccttgTGATGTTTATGAATGAACTTATTTGCTACTGTTCAGTTTTGTACAGAAAAGGAATTGCATTTCTAccaaatatattaacaaaaaaatgaaagaaaagccTTTTCGTGCGATACCACGCACCAAACGAATAAAACGTGTTCTTTCATTGGTTTTTTGATGCTATTTGACTGTTGAACAGAGTTAATATGTCATAATCTTCTGACTTATGCGTTCAGAATAATGATGAGTATAATGCTGGTTGTTTGAGCCCAGGGCAACTCAGACAGCTGTCTCACCGCTTTCTCTGGAGATCAGATGATGGTATTCTATCCATCtatgtgctcttttttttgtgtttcatctACAATGTCTCTGTTTAATAAACCTATGCCATCATA

Function

symbol description
sft2d1 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D1 (SFT2 domain containing 1).

NR:

description
PREDICTED: vesicle transport protein SFT2A

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255790.1 True 1277 mRNA 0.39 8 23447333 23464851
XM_043255791.1 False 1249 mRNA 0.38 9 23447333 23464812

Neighbor

gene id symbol gene type direction distance location
prr18 prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522 coding downstream 1167 23444179 ~ 23446166 (-)
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding downstream 18269 23425032 ~ 23429064 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding downstream 30482 23332820 ~ 23416851 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding downstream 117400 23324782 ~ 23329933 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding downstream 208816 23183915 ~ 23238517 (-)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding upstream 938 23465789 ~ 23505692 (-)
rnaset2 LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213 coding upstream 48964 23513815 ~ 23519654 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding upstream 168865 23633716 ~ 23995593 (-)
angpt2a angpt2,angpt2a coding upstream 578785 24043636 ~ 24057904 (-)
LOC122357144 NA coding upstream 805463 24270314 ~ 24270449 (-)
G96117 NA non-coding downstream 269237 23176802 ~ 23178096 (-)
G96108 NA non-coding downstream 292838 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 417433 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 439870 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 612921 22833829 ~ 22834412 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 73927 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 462480 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 577677 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 605309 24070160 ~ 24070488 (-)
G96295 NA non-coding upstream 642582 24107433 ~ 24107818 (-)
si:ch211-130h14.4 LOC107660236 other downstream 3270 23429646 ~ 23444063 (-)
G96053 NA other downstream 451734 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 624074 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 999322 22371567 ~ 22448011 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 877898 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 934272 24399123 ~ 24404715 (-)

Expression


Co-expression Network