fbxw4 (fbxw4,LOC107707737,LOC107716323,LOC107673945,LOC107694796,LOC107588663,LOC107585327)


Basic Information

Item Value
gene id fbxw4
gene name fbxw4,LOC107707737,LOC107716323,LOC107673945,LOC107694796,LOC107588663,LOC107585327
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24367927 ~ 24393887 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255809.1
aagaTATCAACAAAAGGGCATATAggtatattattataaagttacCAGAAACTGATGAGCTTGTGCGACTGTTCATGCATACAGCTGAATGAAAAGTAGGCTACCACAGAAAACCGGATGGATTTAAGTCACTGGCTCTAGTGGATCACGTGACTCCACTGGTTGTGATGGCTTCCTTCGCTTACTGTGACTACACGCTTTGAGAAAAACATGGGCTTCTGCGTATTCCTGCGTCAAATCGACGAGTGTCTTCTCAGTAATACCCTTCATATTAGTGGAGGCAGACACAGCGTGATAAAGAAAAGGGGAAAGGCGCTGATCTGGAGAAGACGCCGcgatgtttctgtttcagttacCCGAGGATGTGCTCTTTCTCGTCCTGTCCTATCTGGATCCCAGATCGCTCTGCCGCCTCTCTCAAGCGTGCAAGAGAAGCTACATGTTCATCTGCAGGGACGCTGTTTGGAGGAAAATAGCTAAAGACATTATTAACACTGGTTTGACCCGACAAGGAATAGATCTGTGCCCTTCTATTCCTCTTAAAGACAGAGTGAGGGTGTCTCACAACTGGATCCATGGAGTCTGTCGTAAAGAAgttcttttaaaatggaaaattaaCTTGTTGCCGTGGATACAGCTGGACTGTGATGTGCTGTATCTCTCTCAGGCTGCAAACATCAGTGCGTACCATCTGAGAGCTAAGGGGGGAAAGTTGCAGAACAATCGAGTGGCCCTGTTCTCGGGACACCAAGAAGACGTGTGCAGATTCActctgacagacacacaccttATCAGTGCAGGAGGCGATggtaaaataatcattcatgaCAGAGGAAGTGATTACTCTGTGGAGTATTATGGTCACAATCAGGAGGTGAACTGCATTGACTGTAAAGGGGGTGTGATAGTCAGTGGCTCCAGAGACAAGACCGCAAAGatttgGGCTCTGACTCCTGATCGATTTGGACAGTGCTTGCATACAATCCCCACATATGACAGAGTGTGGTCAGTGGCCATTAGCCCATCTCTATGCAACTTTGTGACAGGAACAGCCTGCTGTGAGAATTTTGCTCCTCTTCGCATCTGGGACACTGAAAGGTGTCACCTGGTGTCGTCTCTCGGGACAGAGTTTCGCCGTGGCGCAGGTGTGTTGGACATCGCCTATGAGTCTCCTTTCCAGCTCCTCACCTGTGGATACGATACTTTCATCCGCTACTGGGATTTACGCGTCTGTTCAAGGAAGTGCGTGATGGAGTGGGAGGAGCCTCATGACAGCGCTCTTTACTGTATAAAGACAGACAAGAATCACATGATTGCCAGCGGTTCATCATACTACGGAGTAGTCCGACTTTGGGACAAACGGCAAACCCGCTGTTTACAGATGTTCCAGTTGGCACCCACCACCAGCAGCCCAGTGTACAGCCTGTGCTTCAACACCACTCACCTATACGCTGCCCTGGCCTCTGTCCTCTACTCCCTTGACTTCAGAACTGCATCGCCCCAGTCCTGGAAATAACCATCCGTTTATGTTGCTTGAGACTTTAAGGCTCTTTTTTCATCTCCTCCAAGTTCTTAGTGATGGTCTTAAATGGGGAAGTAGCCGTCTTGCCTTTGGATGATCAGTGCAGCTAATGATACAGTTATGGCCTGGTGGATATTTTTTCCCTGTCACAGGCTCCTGAGAGCAAGCAGGGTTCACGACCTTCTGTGGCCCGAGTCTTAACGGACTTAACACATTGCCAGCGACCTCTGAGACgtctaaaacaaacactgctCAGAGCTGCCAACATCCACTGAGGGGATGTATGCTAAACCACAGCACATAGGATAATAGATATATTGTAactaaaagtatatttttccAACAATGAGCCAATTAaacgtgttttgttttctt

Function

symbol description
fbxw4 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Human ortholog(s) of this gene implicated in split hand-foot malformation 3. Orthologous to human FBXW4 (F-box and WD repeat domain containing 4).

NR:

description
F-box/WD repeat-containing protein 4

GO: NA

KEGG:

id description
K10262 FBXW4, SHFM3; F-box and WD-40 domain protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255809.1 True 1897 mRNA 0.47 9 24367927 24393887

Neighbor

gene id symbol gene type direction distance location
wbp1la LOC107694985,LOC107716324,LOC107585326,LOC107673922,LOC107588740,LOC107708389 coding downstream 6631 24350847 ~ 24361296 (-)
cnnm2a cnnm2a,LOC107716327,LOC107588659,LOC107673921,LOC107585325 coding downstream 26475 24327865 ~ 24341452 (-)
inaa inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding downstream 53981 24311027 ~ 24313946 (-)
LOC122356174 polr1c coding downstream 65512 24298935 ~ 24302415 (-)
LOC122357144 NA coding downstream 97478 24270314 ~ 24270449 (-)
slc2a15a slc2a15a,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370,LOC107588743,LOC108442702 coding upstream 36133 24430020 ~ 24441333 (-)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107673925,LOC107588666,LOC107585329,LOC107716319 coding upstream 209801 24603688 ~ 24620433 (-)
asrgl1 asrgl1,LOC107695955,LOC107585330,LOC107673965,LOC105911569,LOC103032358,LOC108442615 coding upstream 273418 24667305 ~ 24672334 (-)
cgasa NA coding upstream 448383 24842270 ~ 24845635 (-)
eef1a1a eef1a1a,LOC107693767,LOC107716315,LOC107588677,LOC107718831,LOC107673933,LOC108258313,LOC107585334 coding upstream 452562 24846449 ~ 24851300 (-)
G96329 NA non-coding downstream 85310 24274695 ~ 24282617 (-)
G96303 NA non-coding downstream 103010 24264668 ~ 24264917 (-)
G96301 NA non-coding downstream 117172 24250433 ~ 24250755 (-)
G96295 NA non-coding downstream 260109 24107433 ~ 24107818 (-)
G96286 NA non-coding downstream 297439 24070160 ~ 24070488 (-)
G96411 NA non-coding upstream 212243 24606130 ~ 24606376 (-)
G96415 NA non-coding upstream 236666 24630553 ~ 24675946 (-)
LOC122357044 NA non-coding upstream 259040 24652927 ~ 24664925 (-)
G96435 rims1,LOC107588670,LOC107718836 non-coding upstream 316857 24710744 ~ 24713458 (-)
G96436 NA non-coding upstream 320332 24714219 ~ 24716962 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other downstream 23270 24342749 ~ 24344657 (-)
si:ch211-130h14.4 LOC107660236 other downstream 923864 23429646 ~ 23444063 (-)
G96053 NA other downstream 1372328 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 1544668 22821981 ~ 22823259 (-)
G95972 NA other downstream 1945058 22420936 ~ 22422869 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 5236 24399123 ~ 24404715 (-)

Expression


Co-expression Network