LOC122356930


Basic Information

Item Value
gene id LOC122356930
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18373868 ~ 18380023 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256045.1
CTTCAGAACATAGATGAAAAGAAATGTGTGGCGCATTAAGAGAAATGATCGGTTATTTCGGTATGTTTCTACATGGTGAGtgaaaaagctattaaaatagcaacaaaactgtgatttgtgttttgttgtaatCAAAATCTTGTTGATTTATTAGCTTAGGTGGAGCATAACAAAATACGTTTTCTGGCAAATCAGCAGTCCCGCATGCAAATTTAACCAGTTGACATTTCTTTTATGaacttgctaaataaaatgccTAAATCTACTTAATGTTTGTGTTGCAACCAGTAGACTGCTTAAAGGGgccactgtccctttaagagcaaCCTACGCTTGTTTATCCTGTTCAGTAACGAGGTTGAGAGTGGAGTGACTGACGGCGATCCACGAATAAAACCAGCAGCTGTGGAATGCCAGTCAAGGAGCCACTCCCATTATGATTTCAAAAGTTATTATACCGTGAATGTTCCAGTGAAAGCACCAAAATGGCAGAATTAGTCTCTGATGCTCAAAATCCTTTAAACTGCCCGATCTGTCTGAACCTGTTTAAGAACCCGGTGACTACAGCCTGTGGGCACAGTTTCTGTACGGACTGTATAAAGGGTTGCTGGGATCGAGATGCTTCTTTGAGGCGAGTGTACAGCTGCCCTACATGCAGGAAGACGTTCAACCGAAGACCAGATCTCAGCAGAAGCACGGTCCTGGCTGAGATTGTAGAGGGAATGAAACAGGAAGTTCCAGCTAAGCCTGAAGATGTTACGTGCGATTTTTGCAAAGGAAGAAAACTCAAAGCCGtcaagtcttgtttgttttgtatggCTTCTTACTGCCCAACTCACATTCAGCCTCATTACGAGTCTGaagcttttaaaaaacacaagctGGTAGACGCTTCCTCGGATCTACAGCAGCAGATCTGCCCTCAGCATCATAAAGCTCTGGAGATATACTGCTATAACGACCAGAAGTGTATATGTGTAGTTTGTATGGGGACTCAACACAGTGGACATCGAACGGTCTCAGCTGCAGctgaaatggcaaaaaaacagGAGGaactaaatagaaaaaagaGTGATTTCACTCTGAAAATCACAGTCATAGACGAGAAGGTCCAGGCATTTAGGAAGGCTGTGATTTCTTATACGCGTTCTGCACAGGCAGCGGTGGAGCACAGCGAGAGGATCTTCGGTGAGCTCGTCCGCTCCGTTCAGAAAAGACGAGCTGAGGTGAGAGAACTGATCAGAGCTCAGGAGAAGAAGGAGATAGCACAGATCAATGATCACATACAGCAGCTGGAGCGGGAGATCGCCAATCTGCAAAAGGAGAACGAAAAACTGGAGCCGATTTTACATACAGAGGATCACATCCGTTTCTTCCAGagttACTCTCCTCAGTCTGGACTGTATCTGTGCACAGCTTCACCCGGAGATATTAGTGAACTCCTGACCTTTAAGAATGTAGAAGAATCTGTCTCGGGGCTGAAAAGCCAACTGGTCAAAGTCTGTGAAGAACACAAGGCCAGAATAACAAAGAAAGTTGCTGATGTCCAAATTTTCAAGACCTCCAGGCTTCAAGACGcgGATTCTGCACATTTATCTTCAGATTCATCATTAGATTCATCTTCAGATTCATCTTCATCTCCACCACACATGAAAGTCTCACCAGAACCGGATTTTGCGTGGTCAGAATGAAGCCTACCTGGGAATTGTAGCACTCAATGAaaccttcctttttttttaaaaacacatttactttttgAGCGGTGAGAACCAAAGGCTTAAGTGACATTTCGCCGACTTTACAGGAGAGCCTAAACGACATTTTTTAATCATAGTTTGGCTTTGTGTGCTGATTTCAGTTTGTTATAATGCAAATTTGTACACTCGTGGACTACAGTTCTTTTTAAGAGCTTTCGTTTGATATAAATATCCccatttcaccaaaaatgtcCGGTTCTCACCCCCTCCATATACTCTGACTCAAATTTTGCAACATGTCATTCTTCAGTTTATTTAGCACCAAAATAGTAGAATCTTTgtctgatgctgaaaatccttCAAGCTGTTCAGTCTGGACCCAGTATGTTGGACCCATTTGCATGGACTATATTAAGATGTGCCTTATATTACAGAGTTTTATAGTGGAGTTTACAGCTGCCCCAAATGCATGAAGGCGTTCAACCAAAGATGAGCATTCGGAAAGAGCACAGTGTTGGGCCTAGAGATGTGGAGTGGGATGTATGCAAGACCACCAGttcttgtttgtgtgcttgCTTTCTCACTGAGTTAAAAGCTTCTCAACATCACAAAGCACTGGAGATTTACTGCTAGCCGTATATACAGtcataatgtaattttatgttattaaatgtatttattttacagttttattgcaaataaatcaaCAGTGCCTTAATATTAGAACTGCGATGATTGATTTAAAAGTTGACAGAAAGTTAAGGACGGAATTATAGATGCTTGACTTTTATCttcaaacatttattactaTATAGTATTGTTTTCAGGATTTCCAatacaaatgcacatttataacCTGTTTGTATTATGAGATTTGGCTTGCTTTTTTAATAGCTCCAAAATGCCGCCAGATGGTGTCATGTACGACATCTACCAGCAGGGAGTAACAAAACTATTCAACCCCCGTCTCAAACATTTTCCAGTGTTACAAGGTGCCAC
>XM_043256046.1
TTGCTGATGTCCAAATTTCCAAAATTGCTTCATGCGAAGACAtggTTTCTTTAGTTACAGCTTCGTCCTCATCAGACAGTGAATACTGCTTAAAGGGgccactgtccctttaagagcaaCCTACGCTTGTTTATCCTGTTCAGTAACGAGGTTGAGAGTGGAGTGACTGACGGCGATCCACGAATAAAACCAGCAGCTGTGGAATGCCAGTCAAGGAGCCACTCCCATTATGATTTCAAAAGTTATTATACCGTGAATGTTCCAGTGAAAGCACCAAAATGGCAGAATTAGTCTCTGATGCTCAAAATCCTTTAAACTGCCCGATCTGTCTGAACCTGTTTAAGAACCCGGTGACTACAGCCTGTGGGCACAGTTTCTGTACGGACTGTATAAAGGGTTGCTGGGATCGAGATGCTTCTTTGAGGCGAGTGTACAGCTGCCCTACATGCAGGAAGACGTTCAACCGAAGACCAGATCTCAGCAGAAGCACGGTCCTGGCTGAGATTGTAGAGGGAATGAAACAGGAAGTTCCAGCTAAGCCTGAAGATGTTACGTGCGATTTTTGCAAAGGAAGAAAACTCAAAGCCGtcaagtcttgtttgttttgtatggCTTCTTACTGCCCAACTCACATTCAGCCTCATTACGAGTCTGaagcttttaaaaaacacaagctGGTAGACGCTTCCTCGGATCTACAGCAGCAGATCTGCCCTCAGCATCATAAAGCTCTGGAGATATACTGCTATAACGACCAGAAGTGTATATGTGTAGTTTGTATGGGGACTCAACACAGTGGACATCGAACGGTCTCAGCTGCAGctgaaatggcaaaaaaacagGAGGaactaaatagaaaaaagaGTGATTTCACTCTGAAAATCACAGTCATAGACGAGAAGGTCCAGGCATTTAGGAAGGCTGTGATTTCTTATACGCGTTCTGCACAGGCAGCGGTGGAGCACAGCGAGAGGATCTTCGGTGAGCTCGTCCGCTCCGTTCAGAAAAGACGAGCTGAGGTGAGAGAACTGATCAGAGCTCAGGAGAAGAAGGAGATAGCACAGATCAATGATCACATACAGCAGCTGGAGCGGGAGATCGCCAATCTGCAAAAGGAGAACGAAAAACTGGAGCCGATTTTACATACAGAGGATCACATCCGTTTCTTCCAGagttACTCTCCTCAGTCTGGACTGTATCTGTGCACAGCTTCACCCGGAGATATTAGTGAACTCCTGACCTTTAAGAATGTAGAAGAATCTGTCTCGGGGCTGAAAAGCCAACTGGTCAAAGTCTGTGAAGAACACAAGGCCAGAATAACAAAGAAAGTTGCTGATGTCCAAATTTTCAAGACCTCCAGGCTTCAAGACGcgGATTCTGCACATTTATCTTCAGATTCATCATTAGATTCATCTTCAGATTCATCTTCATCTCCACCACACATGAAAGTCTCACCAGAACCGGATTTTGCGTGGTCAGAATGAAGCCTACCTGGGAATTGTAGCACTCAATGAaaccttcctttttttttaaaaacacatttactttttgAGCGGTGAGAACCAAAGGCTTAAGTGACATTTCGCCGACTTTACAGGAGAGCCTAAACGACATTTTTTAATCATAGTTTGGCTTTGTGTGCTGATTTCAGTTTGTTATAATGCAAATTTGTACACTCGTGGACTACAGTTCTTTTTAAGAGCTTTCGTTTGATATAAATATCCccatttcaccaaaaatgtcCGGTTCTCACCCCCTCCATATACTCTGACTCAAATTTTGCAACATGTCATTCTTCAGTTTATTTAGCACCAAAATAGTAGAATCTTTgtctgatgctgaaaatccttCAAGCTGTTCAGTCTGGACCCAGTATGTTGGACCCATTTGCATGGACTATATTAAGATGTGCCTTATATTACAGAGTTTTATAGTGGAGTTTACAGCTGCCCCAAATGCATGAAGGCGTTCAACCAAAGATGAGCATTCGGAAAGAGCACAGTGTTGGGCCTAGAGATGTGGAGTGGGATGTATGCAAGACCACCAGttcttgtttgtgtgcttgCTTTCTCACTGAGTTAAAAGCTTCTCAACATCACAAAGCACTGGAGATTTACTGCTAGCCGTATATACAGtcataatgtaattttatgttattaaatgtatttattttacagttttattgcaaataaatcaaCAGTGCCTTAATATTAGAACTGCGATGATTGATTTAAAAGTTGACAGAAAGTTAAGGACGGAATTATAGATGCTTGACTTTTATCttcaaacatttattactaTATAGTATTGTTTTCAGGATTTCCAatacaaatgcacatttataacCTGTTTGTATTATGAGATTTGGCTTGCTTTTTTAATAGCTCCAAAATGCCGCCAGATGGTGTCATGTACGACATCTACCAGCAGGGAGTAACAAAACTATTCAACCCCCGTCTCAAACATTTTCCAGTGTTACAAGGTGCCAC

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256045.1 True 2696 mRNA 0.41 9 18373868 18379251
XM_043256046.1 False 2489 mRNA 0.42 11 18373868 18380023

Neighbor

gene id symbol gene type direction distance location
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding downstream 293262 18073731 ~ 18080606 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding downstream 393759 17972876 ~ 17980109 (-)
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding downstream 408998 17960037 ~ 17964870 (-)
runx3 runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963 coding downstream 520495 17800984 ~ 17853373 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 585737 17776719 ~ 17788131 (-)
ftr69 LOC107597643,LOC107679211 coding upstream 12 18380035 ~ 18383710 (-)
fgfr2 fgfr2,LOC107724577 coding upstream 78175 18458198 ~ 18504277 (-)
LOC122356087 ate1,LOC107655512 coding upstream 194761 18574784 ~ 18585116 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding upstream 326326 18706349 ~ 18743542 (-)
LOC122356860 NA coding upstream 397645 18777668 ~ 18780239 (-)
G94826 marcksl1a,LOC107597644,LOC107724621,LOC107679202,LOC107734268,LOC107655702,LOC107585455 non-coding downstream 2517 18218993 ~ 18371351 (-)
G94734 NA non-coding downstream 232084 18141523 ~ 18141784 (-)
G94731 NA non-coding downstream 236227 18137427 ~ 18137641 (-)
G94728 NA non-coding downstream 237254 18134445 ~ 18136614 (-)
G94723 NA non-coding downstream 253252 18119803 ~ 18120616 (-)
LOC122356994 NA non-coding upstream 72849 18452872 ~ 18456126 (-)
G94843 NA non-coding upstream 160362 18540385 ~ 18540700 (-)
G94845 NA non-coding upstream 163629 18543652 ~ 18543984 (-)
G94849 NA non-coding upstream 243460 18623483 ~ 18627312 (-)
G94941 NA non-coding upstream 536222 18916245 ~ 18916650 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 986862 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1947333 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2081489 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 2204664 16009687 ~ 16169204 (-)
G94216 NA other downstream 2488646 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 165548 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 577680 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 906007 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1482507 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1529172 19909195 ~ 19921669 (-)

Expression


Co-expression Network