LOC122356970 (gpatch11,LOC107689758,LOC107562390,LOC107708600)


Basic Information

Item Value
gene id LOC122356970
gene name gpatch11,LOC107689758,LOC107562390,LOC107708600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20542775 ~ 20546992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256110.1
ATGGCTGATGAAGAAGATGATTACATGTCTGACGCCTTCCTGAACCAAATCCCAGATGTCCGGCCCGGCGTCCCGATGGTGAAGCGCGTGAAGGAAGCCATGAAAAAAGAGGCCCTGCAGAAAGAGAAGAACGCCCAGAACCGGCAGAAGAGCTACAAAGAGCAGGAGCGAGAGAGTCGGGAGAGCGCTCTTCAGAGCTCCTTGAGCAGCCAAAACAAAGGCTTTGCGTTGCTGCAGAAGATGGGATACAAAGCAGGACAAGGCCTGGGAAAAGAGGGTGCCGGACGGGTCGAGCCGGTTCCTCTGAACATCAAAACAGACAGAGGCGGCATTGGGATGGAGGAGGTCAGGAAGAGGAAAGCCGACGAGGAGCTGCAGAGTTACAGGAGAAAAGCGCAGCTGACGCAGCAGGTGGAGAAGAAGTCATTAGAGGACTTCAGAGTGCGTAAGAGGAGCGAGAGAGAAGAGCGTCAGATACAGGGCGACCTGAGGAAGAGCCAGCGGGCCTGTGAGCAGCTCGACAGCCAGAAGGGCGTCGCTGTTCCCAGAGACAGCTGGTACTGGCCTGAAGATGTGAAAGACGAAGAGGCGGAGCTTCTGGAGGAGGAAACCAAACCGGAGGGAAGTGACGACGAGGAGGAACTAACACCTTTAGACAAGCTGCAGTTTCTCACCTCGTATCTGCGAGGAGTCCACTTTTACTGCATATGGTGTGGGACGGCTTTTAATGACGAGGAGGATTTGAGCTCAAACTGTCCCGGAGACACGGCAGCGGATCACGACGACTAGAACCACCTGCAGTTATCCGGAACacttgcatttctttttttttttgtgttcgatatttattcattcattaaacaacacATTGATATTTTGATTATAATCGGTGCGTGGTCGTGTTGATTCATCACTTTGCATGTTTCCGAATCTCAGCCACTCACAAACGTTTATTAAGGACTCTGTAAAAATACTatgatatttgtttttatttctccagTGAGCCTAAAGCAATCAAAGATTAAAAATTTGCTTTGTACGTAA

Function

symbol description
gpatch11 Predicted to enable nucleic acid binding activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11).

NR:

description
PREDICTED: G patch domain-containing protein 11

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256110.1 True 1044 mRNA 0.50 9 20542775 20546992

Neighbor

gene id symbol gene type direction distance location
eif2ak2 NA coding downstream 140 20521647 ~ 20542635 (-)
nid1a nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665 coding downstream 40127 20347147 ~ 20502648 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding downstream 197093 20275777 ~ 20345682 (-)
b3galnt2 b3galnt2,LOC107730378,LOC107667096,LOC107728324 coding downstream 278522 20245487 ~ 20264253 (-)
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding downstream 323875 20150458 ~ 20218900 (-)
mypn LOC107689354,LOC107562382,LOC107750149,LOC107565072 coding upstream 25328 20572320 ~ 20595989 (-)
cacul1 cacul1,LOC107689372,LOC107562395 coding upstream 51732 20598724 ~ 20606506 (-)
sirt1 sirt1,LOC107565065,LOC106604510 coding upstream 60265 20607257 ~ 20616412 (-)
herc4 LOC107689351,LOC107750134,LOC107689752,LOC107728328 coding upstream 77985 20624977 ~ 20645338 (-)
ccnj ccnj,LOC107689370,LOC107565073,LOC107728310,LOC107750147,LOC107689765,LOC107750154 coding upstream 98702 20645694 ~ 20651555 (-)
G95524 NA non-coding downstream 22682 20518600 ~ 20520093 (-)
G95519 NA non-coding downstream 27464 20514773 ~ 20515311 (-)
G95506 NA non-coding downstream 304548 20236678 ~ 20238227 (-)
LOC122356209 NA non-coding downstream 401817 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 466838 20075371 ~ 20075937 (-)
G95537 NA non-coding upstream 73055 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 74270 20621262 ~ 20678269 (-)
G95549 NA non-coding upstream 281786 20828778 ~ 20829053 (-)
G95623 NA non-coding upstream 300305 20847297 ~ 20926743 (-)
G95635 NA non-coding upstream 429287 20976279 ~ 20976497 (-)
G95511 NA other downstream 45911 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 50699 20488785 ~ 20492076 (-)
G95520 NA other downstream 56071 20479925 ~ 20486704 (-)
LOC122356211 gng4 other downstream 267389 20264726 ~ 20275386 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 621106 19909195 ~ 19921669 (-)
G95526 NA other upstream 23046 20570038 ~ 20571562 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other upstream 460480 21007472 ~ 21180217 (-)
LOC122357128 NA other upstream 1590396 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1604750 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1684457 22231449 ~ 22250313 (-)

Expression


Co-expression Network