b3galnt2 (b3galnt2,LOC107730378,LOC107667096,LOC107728324)


Basic Information

Item Value
gene id b3galnt2
gene name b3galnt2,LOC107730378,LOC107667096,LOC107728324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20245487 ~ 20264253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256231.1
CGTGCAGTTTAGACATGACGCAGCGCGTCGGGAGCCCGTCACATCAGCGATGCGCGTCGCGGCGAGTCGCCGGTCCGGTCGTTGTGTGCGCAGCCCGTTAAGCGTCGGTGTCCGGACCCAGCCGTTCGTCCATGAGAAGCGCGGCGGCGGCGCTGTTTCCGTGTGTCTTCGCGGCGCTGCTTCACTGGCTCGGCTGGACCGACAGAACCGCGCTCCTGCTGGGCTTCGGCTCTGCAGACAACCAGAAGGCTGTGCGCGAGGTGCTGGTGGGCGTCCTGTCAGCGAGGCATCATCACGAGCTCCGGCAGGCCATAAGAGACACGTGGCTGGGGTACCTCAAACAGCACCCGCACTTCCAGAAACGGGTGATGGTGAAGTTCATCATCGGCGAGCGAGGCTGTTCGGTGCCGGAGGAGGACCGCGAGGACCCGTATTCCTGCTCGCTGCTGAACCTCACGGAGACGGCTGCTGGACAGGAGATGGCTATACTGAGCGTTCCTGACACGTCCGCTCTGCTGCCGTCCGACGTCTCTGCCGTCAGTCTGGACTTCAAGGTCCTTCACTCGGTGGTCATCACCCAGCTGGGCGTCTTTCCCAACGCGCCGCAAGACCACTTCAGAGGCAACGTCACCGTCCGGCTCTTCCAGGTGGACCAAGAGgagCCGGTGGTCACCGCTCGCTTCAGCGCACTGAGTCCAGGCACACGTGTGGGTGGGATGTTTTACAAACCCGTCGAGCAGTTCATTCTTCCCAAGGGTTTTGAGGGGACTCTTCTGTGGGAGGCCCAGGATTCGTCGGGCCTGATGTCGGTCGACACGTCGGCGGTGCAGCTGAGTCACGGAGGAGGCGTGCTCAAGTTCGGATCTATAGAGGAGGGAACGCTGCCTCACAGGAGCGCTTTGGGCTTCCCAGGCTTAGCCGGAGGATTCACTTTTTCAGTCTACGatggtCAGGTGTTATCGGAGCTTCTCCGCGGTCGAGCCGGTCGTCAGCGTATCCGTGAGTCTCAGCTGAGAGAGGAGGACCAGGCCCTGCGGGAGGAGAACCTCAGACATGGAGACATGGTGTTTGTGGACGTGGTGGACACTTACAGGAACGTGCCTTTAAAGCTGCTGCAGTTTTACAAATGGTCGGTGGGAAACGCTGACTTCAAGCTGCTGCTGAAGACGGATGACGACTGCTATATCGACGTGGATGCTGTCCTGCTGAAGACGGAGCGCAGACGCCTCTCACAGAGCAGCCTGTGGTGGGGAAATTTCCGTCAGAACTGGGCCGTGGATCGCGTGGGGAAATGGCAGGAGCTGGAGTACGCGAGCCCAGCCTATCCGGCCTTCGCCTGTGGCTCTGGGTATGTGGTGTCCAGGGATCTGGTGGAGTGGCTGGCCAGCAACGCTCAACATCTCAAAGCCTACCAGgGAGAGGACGTGAGCATGGGCATCTGGATGGCTGCCGTCGGGCCTCGCAAATATCAGGATTCAGGCTGGCTGTGTGAGAAGGAGTGTTTCGTGGACATGCTGTCGTCTCCTCAGCACTCTCCTCAGGAGCTGCGCTCGCTCTgggacaggaagaggaagtgctCCGATCCCTGCGGCTGTGCCTGGGCCGGCCCCTGACCCCGTCTTCAGTACGACACACTCGTCATGTCGTCCACCGGCGGATGTCAGACGCACACGGGGTTTGAGGAGCGCCGGCGCCGCTTCACCCGTCCTTCCTCTCGTTCGCTGTCTTTCAGATCCTGAAATGGCGAAGCACCCGCCAAACCCCTTCCGGCGCTTTTACCTTAGCTGCAAGCCAAAACCGTTACACCGAGGCGGTGGTTTatgaacaataaaacattacaacagGA
>XM_043256232.1
CAGCGTGCAGTTTAGACATGACGCAGCGCGTCGGGAGCCCGTCACATCAGCGATGCGCGTCGCGGCGAGTCGCCGGTCCGGTCGTTGTGTGCGCAGCCCGTTAAGCGTCGGTGTCCGGACCCAGCCGTTCGTCCATGAGAAGCGCGGCGGCGGCGCTGTTTCCGTGTGTCTTCGCGGCGCTGCTTCACTGGCTCGGCTGGACCGACAGAACCGCGCTCCTGCTGGGCTTCGGCTCTGCAGGGTGATGGTGAAGTTCATCATCGGCGAGCGAGGCTGTTCGGTGCCGGAGGAGGACCGCGAGGACCCGTATTCCTGCTCGCTGCTGAACCTCACGGAGACGGCTGCTGGACAGGAGATGGCTATACTGAGCGTTCCTGACACGTCCGCTCTGCTGCCGTCCGACGTCTCTGCCGTCAGTCTGGACTTCAAGGTCCTTCACTCGGTGGTCATCACCCAGCTGGGCGTCTTTCCCAACGCGCCGCAAGACCACTTCAGAGGCAACGTCACCGTCCGGCTCTTCCAGGTGGACCAAGAGgagCCGGTGGTCACCGCTCGCTTCAGCGCACTGAGTCCAGGCACACGTGTGGGTGGGATGTTTTACAAACCCGTCGAGCAGTTCATTCTTCCCAAGGGTTTTGAGGGGACTCTTCTGTGGGAGGCCCAGGATTCGTCGGGCCTGATGTCGGTCGACACGTCGGCGGTGCAGCTGAGTCACGGAGGAGGCGTGCTCAAGTTCGGATCTATAGAGGAGGGAACGCTGCCTCACAGGAGCGCTTTGGGCTTCCCAGGCTTAGCCGGAGGATTCACTTTTTCAGTCTACGatggtCAGGTGTTATCGGAGCTTCTCCGCGGTCGAGCCGGTCGTCAGCGTATCCGTGAGTCTCAGCTGAGAGAGGAGGACCAGGCCCTGCGGGAGGAGAACCTCAGACATGGAGACATGGTGTTTGTGGACGTGGTGGACACTTACAGGAACGTGCCTTTAAAGCTGCTGCAGTTTTACAAATGGTCGGTGGGAAACGCTGACTTCAAGCTGCTGCTGAAGACGGATGACGACTGCTATATCGACGTGGATGCTGTCCTGCTGAAGACGGAGCGCAGACGCCTCTCACAGAGCAGCCTGTGGTGGGGAAATTTCCGTCAGAACTGGGCCGTGGATCGCGTGGGGAAATGGCAGGAGCTGGAGTACGCGAGCCCAGCCTATCCGGCCTTCGCCTGTGGCTCTGGGTATGTGGTGTCCAGGGATCTGGTGGAGTGGCTGGCCAGCAACGCTCAACATCTCAAAGCCTACCAGgGAGAGGACGTGAGCATGGGCATCTGGATGGCTGCCGTCGGGCCTCGCAAATATCAGGATTCAGGCTGGCTGTGTGAGAAGGAGTGTTTCGTGGACATGCTGTCGTCTCCTCAGCACTCTCCTCAGGAGCTGCGCTCGCTCTgggacaggaagaggaagtgctCCGATCCCTGCGGCTGTGCCTGGGCCGGCCCCTGACCCCGTCTTCAGTACGACACACTCGTCATGTCGTCCACCGGCGGATGTCAGACGCACACGGGGTTTGAGGAGCGCCGGCGCCGCTTCACCCGTCCTTCCTCTCGTTCGCTGTCTTTCAGATCCTGAAATGGCGAAGCACCCGCCAAACCCCTTCCGGCGCTTTTACCTTAGCTGCAAGCCAAAACCGTTACACCGAGGCGGTGGTTTatgaacaataaaacattacaacagGA

Function

symbol description
b3galnt2 Predicted to enable acetylgalactosaminyltransferase activity. Acts upstream of or within muscle cell development and protein glycosylation. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A11. Orthologous to human B3GALNT2 (beta-1,3-N-acetylgalactosaminyltransferase 2).

NR:

description
LOW QUALITY PROTEIN: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0006493 protein O-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K09654 B3GALNT2; beta-1,3-N-acetylgalactosaminyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256231.1 True 1846 mRNA 0.61 12 20245487 20264250
XM_043256232.1 False 1722 mRNA 0.60 11 20245487 20264253

Neighbor

gene id symbol gene type direction distance location
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding downstream 26587 20150458 ~ 20218900 (-)
tomm20a tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505 coding downstream 100019 20142549 ~ 20145468 (-)
LOC122357145 NA coding downstream 101760 20143596 ~ 20143727 (-)
irf2bp2a irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 coding downstream 141615 20101059 ~ 20103872 (-)
LOC122356780 NA coding downstream 209014 20025669 ~ 20036473 (-)
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding upstream 11524 20275777 ~ 20345682 (-)
nid1a nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665 coding upstream 82894 20347147 ~ 20502648 (-)
eif2ak2 NA coding upstream 257394 20521647 ~ 20542635 (-)
LOC122356970 gpatch11,LOC107689758,LOC107562390,LOC107708600 coding upstream 278522 20542775 ~ 20546992 (-)
mypn LOC107689354,LOC107562382,LOC107750149,LOC107565072 coding upstream 308067 20572320 ~ 20595989 (-)
G95506 NA non-coding downstream 7260 20236678 ~ 20238227 (-)
LOC122356209 NA non-coding downstream 104529 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 169550 20075371 ~ 20075937 (-)
G95190 NA non-coding downstream 398953 19846301 ~ 19846534 (-)
LOC122356282 NA non-coding downstream 409834 19818053 ~ 19835653 (-)
G95519 NA non-coding upstream 250520 20514773 ~ 20515311 (-)
G95524 NA non-coding upstream 254347 20518600 ~ 20520093 (-)
G95537 NA non-coding upstream 355794 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 357009 20621262 ~ 20678269 (-)
G95549 NA non-coding upstream 564525 20828778 ~ 20829053 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 323818 19909195 ~ 19921669 (-)
disc1 LOC107666898,LOC107730373 other downstream 338425 19862530 ~ 19907062 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other downstream 883446 19286030 ~ 19362041 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 1269963 18957703 ~ 18975524 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 1572594 18545571 ~ 18672893 (-)
LOC122356211 gng4 other upstream 473 20264726 ~ 20275386 (-)
G95520 NA other upstream 215672 20479925 ~ 20486704 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other upstream 224532 20488785 ~ 20492076 (-)
G95511 NA other upstream 229389 20493642 ~ 20496864 (-)
G95526 NA other upstream 305785 20570038 ~ 20571562 (-)

Expression


Co-expression Network