nid1a (nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665)


Basic Information

Item Value
gene id nid1a
gene name nid1,LOC107691203,LOC107750138,LOC107689759,LOC107728305,LOC107575665
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20347147 ~ 20502648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256235.1
ATATTAATAGTTGACTTCCGGTCGGAGCCGCGAGGGTGTCCTGGAAGCGCTGTCCTGAAGCTGCGGTCCTGAGATTGCGGCGCAGAAACACGCTGCTGCTTAAAAACGGGCTTTCCCCTCAGCGAGTCAGTCAGTGAGTCTAAGGCGGCTTCAGACACGGTTCCGGACTGGAAATGGGTCGGCAGGGGCAGAGATGGCCGGTGTGGAGCTTACTCCTGGGACTGTCGGTGTGTGTCAGCGGGATAAAGCGACAAGAACTTTTTCCGTTCGGGAGAAGCGCAGGAGACCAGTCCCTCGAAGCGGGCAACGATAAAACTCGGGAGATCACGCCGGACAAGCCCGTGACATTTTACGACGGGCAGTTCAGCAAGATTTACATCAACACCAACGGCTTCGTTGCTCTGGAGGCGCCGACGGCAGAGTCTGAGTATCTGGGGAACATGCCGGCTGGTTTCGGGATGATCGCAGCTCTTCAGGGCGACCTGGACACCAGCGACGGAGTGGGAAAGGTGTTCTTCCGCCAGGACTCCAGTCCAGCTCTTCTCCAGCAGGCGGCCGATCACATCAACAGAGCCTTCCCCGAGGATGACGTGGTGAACCCCATCAGCGCGGTGGTGGTCACGTGGGTGGATGTGGCGTCCCATCGGGCTGAGAGCAGAGGGGACGGACTGGAGTCCACCGGAAGAAGAAATACGTTTCAGCTGGTCATTGCTTCTCTGGAGACCATGTCTTATGCGATTCTTCTGTACCCGAGAGAAGCGATGCAGTTCCAGAGCACCGGCAGCTACACGATGCACGCCGGCTTCAGTAAAGGACATATAAGCAGGAAGCAGGGGCCGTACTACCGCATCACAGACGACACCGAGCTGTCTGTCAGGAGCTTAGCTGAGCAGACCAACTCCGGGAAGCGTGGCGTGTGGGTTTACGAGATAGGAACGCCTCACTTCACGGACGTCGCTCCCGGAGAAGTGCCGGACCTGCCTCCGGACTCCCACCGGCATCAGACCGCAAGGAACCACCACCATCAGCGGCCGCTGTACCCCGACGTCCGGCGGGAGAGCCTGGGCGGAGTCTACGACCGGCCGGAGCATCCTCCACCCGTCCCGGTGCAGGCGGTCCAGTACAGACCCGAGCGGCCGGCGGTCGTGGAAATCGAAAACGGAGACGGAGACAACATCGAGGTCGACGTGTTTACGTACAGCTCTGGTGAATGTGATGGACGGAAATGCTCTAAATTTGGGGAATGCCGGAGTCATCCGAGCGGACGATGCTGTCAGTGTAAACCTGGATACTACGGGAACGGCGTGCAGTGCGTCCCTGATGGTATTCCTCAGAGGATGAACGGTAAAGTGAGCGGCAGGGTGATCGTGGGAAGCTCTCCGCTGCCCGTGGATTTCGCCAGTAACGATCTCCACTCGTACGTGGTGGTGAACGACGGCAGAGCGTACGTGGCCATCAGCGCCATTCCCCCGATCGTCGGCTTCTCTCTGCAGCCGCTGTCGTCCGTCGGGGGGATCATCGGCTGGGCCTTCGCCCTTCAGCGGCCGGGCTTCAAGAACGGCTTCAGCGTCATCGGCGGAGTGTTCAAACGTCAGGCCGACGTGACCTTCCAGCCAGGTGGAGAAAGGCTGACCATCTCTCAGGAGTTCAAAGGCATTGATGAGCACGACCACCTGATGGTTGACACCAGACTTGAAGGAAAGATTCCTGAGGTTCCTCAGGGAGCCACAGTTCAGATTGCCTACACAGAGATCTACCAGTACAGCACCAACTTGATTTCTGCTTCATCCACCCGGGAGTACGTGATCAATCTGCGGGACCGTTCAACCCAAAGCAGAAGCTACAATTTAAGAGAGACCATCACGTTTCAGGGCTGCCACCTCGATGAAGTGGTCAGAGCCACACAGATGCTCAGCGTCGACCAGGTCTTCGTCATGTATGACACGAGCGAACAGCTCTTGCGTTACGCCACGAGTAACAAGATCGGTGACGTCAACGGTGGACAAACGGAGGAAAACGCCTGCTTCACCGGCAGACACGGCTGTGACACCAACGCCGTCTGCAGACCCGGCCAAGGAAACCAGTTCACGTGTGAATGTGCCACGGGCTTCACCGGAGACGGACACGCTTGCGCTGACGTCGATGAATGCAGGGACACTCCTCAGATCTGCGGGCCGAACGCCATCTGTAATAACCAGCCGGGGACGTTTCGCTGCGAGTGCCAGGACGGCTTCCAGTTCGCCGGCGACGGACAGACGTGTGTCGAGGTGCAGCGTCCCGTGGACCCGTGTCGCTTGGGCACCCATGACTGTGACGTCCCCGAGCGCGCTCGCTGCAGCTACACCGGAGCATCGTCCTACATCTGCAGCTGCCTGCCCGGCTTCATGGGAGACGGACGCAGCTGTCAGGACATAGATGAGTGTCAGGTGAATCAGTGTCATGACGATGCCGtctgcctcaacacacctggaTCTTTCACCTGTCAGTGTAACCCTGGTTTCTATGGCGATGGTTTCTCCTGCTCTACAGAGTATGAGAAGACGCGCTGCCAGCTGCATAGAGAGAGCGCTCTGGGAGCCGGGCCCCGCGGCCCCCGACCCGGTCAGTATGTGCCGACGTGTGACGCCCAGGGAGGGTACGACCCCATGCAGTGTCACGCCAGCATCGGGCAGTGCTGGTGCGTCGACCGTGACGGCCAGGAGATCGCTGGGACACAAACAGGACCCGGACGCTTTCCCGAGTGTCCTGGTCACGATGTCCCTCGCCCGATTGGACCAACGCCCGATCCTAACGTGAATCCTTTGCCTCCTGGCAGTCATATCCTCTTCGTCCAGAGCGGGAAGATCGAGTATATTCCTCTGGAAGGTCACAAACTGAAGAAGAACCAAGCCAAGACTGTACTGCATCTCCCGGAGAAAGTGGTGATCGGAATTGCTTATGACTGCGTGGAGAAGATGGTGTATTGGACGGACATCAGCACACCTGCCATTAGCAAAGCTAGTCTACAGGGAGGAGAACCTGTCCACATCGTCAAATCAGATCTCAGCAGCCCTGAAGGCATCGCCATCGACCATCTGGGCCGAAACGTGTTCTGGACCGACTCCGTCAAGGACAGGATCGAGGTTTCTTCTTTGGACGGATCCCAGCGCCGCGTCTTGATTAACACAGACCTGGTTAACCCGAGGGCCATCCTGGCCGATCCCACCAACGGCTACATTTACTGGGCCGACTGGAACAGGGACGCCCCCAAAATCGAGATGGCTTACATGGACGGCAGAAACCGCAGGGTCCTGGTCAAGGATGACCTGGGCCTCCCCAACGGTTTAACTCACGACCCCCAGACGTCTCTGCTGTGCTGGGCGGACGCTGGTACACATAAACTGGAGTGCATGAATCCACAGCAGGGCGGTCGGAGGCAGCTTATGGAGGGGATTCAGTATCCCTTCGGACTGACTACTGATGGAAAGAACCTCTACTACACAGACTGGACGAGGGGAGCGGTAGTCGTCGCTGATCGATATGCTCGTCGAGAAGTGGACGAGTTCCAGCCCCAGAAGCGAACGCGTCTCTACGGGATCACCGCGGCTCACGCGCACTGCCTGTCCGGTCAGAACCGCTGCTCCGGTGATAACGGCGGCTGCACGCACTTGTGCCTGGCGACGCCCGCTGGACGCTCGTGCCGGTGCCCGGAGAACCCCGCGGGGCTGGACTGCGTGGAGCGGGAAGACTGAGACCGGGGCGGACCCGTGCTGATGGACGGCGCTCCCGCGGCGCCACGTCTCGTCCGAAAGACGCATTAAAGCCGTCTCGGCATTGAAGATTTATAAACGCATCCGTGCCTTAAATACGATCACGGGGCAGTTAACGCCGGTGAGGTCACTGTGAGTTCAGTCTCGTGACTTTCCCCCCAAATCGTTTTCATGCAAAACTTAACAGCGGTCGCCCCgatacttttaaaagaaagaaatgcctGGCATAAATCGATGTTTACACACGCATCTCTTCAATAAAATCGTATTTTGTTTA

Function

symbol description
nid1 Enables collagen binding activity; laminin binding activity; and proteoglycan binding activity. Predicted to be involved in basement membrane organization. Predicted to act upstream of or within cell-matrix adhesion; glomerular basement membrane development; and positive regulation of cell-substrate adhesion. Located in basement membrane. Colocalizes with collagen-containing extracellular matrix.

NR:

description
nidogen-1

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256235.1 True 4026 mRNA 0.58 22 20347147 20502648

Neighbor

gene id symbol gene type direction distance location
lyst lyst,LOC107691204,LOC107728318,LOC107689764,LOC107569426 coding downstream 1465 20275777 ~ 20345682 (-)
b3galnt2 b3galnt2,LOC107730378,LOC107667096,LOC107728324 coding downstream 82894 20245487 ~ 20264253 (-)
arid4b arid4b,LOC107690809,LOC107557720,LOC107667027,LOC107728306 coding downstream 128247 20150458 ~ 20218900 (-)
tomm20a tomm20a,LOC107690811,LOC107728308,LOC107667141,LOC108247505 coding downstream 201679 20142549 ~ 20145468 (-)
LOC122357145 NA coding downstream 203420 20143596 ~ 20143727 (-)
eif2ak2 NA coding upstream 18999 20521647 ~ 20542635 (-)
LOC122356970 gpatch11,LOC107689758,LOC107562390,LOC107708600 coding upstream 40127 20542775 ~ 20546992 (-)
mypn LOC107689354,LOC107562382,LOC107750149,LOC107565072 coding upstream 69672 20572320 ~ 20595989 (-)
cacul1 cacul1,LOC107689372,LOC107562395 coding upstream 96076 20598724 ~ 20606506 (-)
sirt1 sirt1,LOC107565065,LOC106604510 coding upstream 104609 20607257 ~ 20616412 (-)
G95506 NA non-coding downstream 108920 20236678 ~ 20238227 (-)
LOC122356209 NA non-coding downstream 206189 20108191 ~ 20140958 (-)
G95469 NA non-coding downstream 271210 20075371 ~ 20075937 (-)
G95190 NA non-coding downstream 500613 19846301 ~ 19846534 (-)
LOC122356282 NA non-coding downstream 511494 19818053 ~ 19835653 (-)
G95519 NA non-coding upstream 12125 20514773 ~ 20515311 (-)
G95524 NA non-coding upstream 15952 20518600 ~ 20520093 (-)
G95537 NA non-coding upstream 117399 20620047 ~ 20620719 (-)
G95535 NA non-coding upstream 118614 20621262 ~ 20678269 (-)
G95549 NA non-coding upstream 326130 20828778 ~ 20829053 (-)
LOC122356211 gng4 other downstream 71761 20264726 ~ 20275386 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other downstream 425478 19909195 ~ 19921669 (-)
disc1 LOC107666898,LOC107730373 other downstream 440085 19862530 ~ 19907062 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other downstream 985106 19286030 ~ 19362041 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other downstream 1371623 18957703 ~ 18975524 (-)
G95526 NA other upstream 67390 20570038 ~ 20571562 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other upstream 504824 21007472 ~ 21180217 (-)
LOC122357128 NA other upstream 1634740 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 1649094 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 1728801 22231449 ~ 22250313 (-)

Expression


Co-expression Network