G103094 (slc1a5,LOC107752279,LOC107699227,LOC107699184,LOC107566078,LOC107592660)


Basic Information

Item Value
gene id G103094
gene name slc1a5,LOC107752279,LOC107699227,LOC107699184,LOC107566078,LOC107592660
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 1777020 ~ 1828300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU152376
GGTGAACAATCCGGGCTGTATGATGAACGCCATAATAACGCCGATGGCGGACGCGATCAGAGTGGTCACCAGAAAGAAGAGCATCGCCCACCCGCCCAGCTTGCCCAGGGCTTTGGGGTCAAGGCTGGCGGCCCCTGACACCAGACTGCAGACCACCAGGGGAATGATGATCATCTtgagcaggcggatgaggagcTCGCCGGGGAACCCGAAGTAAAGGATCTGCGTGCGGCTCAGCCCGGCGCTTCGCACGCCGAGCCCGATGAAGACGCCGACGATGACCGCGGACACCGTCAGGATGACCAGCAGGTTGGCCATGGCGAAGCGCTTCAGTTTCTGCCCTCTGGTCTCCGGCTCGCTCCTCGCGCGCTCGCCCAAGCCGTTGGCGATGGCCGGGTCGTCCAGGTGCGCTTCGCCGTTGGACGCCTTTGCGTCTTCTATAGAGATCTTTTCTTCTGCCATCGTGCCCGTCTGAAGGTGGGAGAGTTCGTGTAAAAGTCTTTGGTGCGAGCTGATCGTccgctctctctcctcctcgcGCGCTGGCAGCGTAGAAATGACTCGGCG
>TU152377
TAAACGTTACCCGCGTGAGTTTATCACGCATCTAATTATTCGAACGAGTTTGGAACCCTAGAGTTCTAATTCCGAACGCGCCGCGCGAACACGTGTTCGCCGGCGACACGGGGACTCACCTTATCAAGTCTAAAAACGAGTCGATGACTTCTTTGGCTTTTGGGACCTCGGTGTCATCCTGGTTGAGGCTGGACATTTTTTGTCCGCTGGAGCCGGGCTGTATGATGAACGCCATAATAACGCCGATGGCGGACGCGATCAGAGTGGTCACCAGAAAGAAGAGCATCGCCCACCCGCCCAGCTTGCCCAGGGCTTTGGGGTCAAGGCTGGCGGCCCCTGACACCAGACTGCAGACCACCAGGGGAATGATGATCATCTtgagcaggcggatgaggagcTCGCCGGGGAACCCGAAGTAAAGGATCTGCGTGCGGCTCAGCCCGGCGCTTCGCACGCCGAGCCCGATGAAGACGCCGACGATGACCGCGGACACCGTCAGGATGACCAGCAGGTTGGCCATGGCGAAGCGCTTCAGTTTCTGCCCTCTGGTCTCCGGCTCGCTCCTCGCGCGCTCGCCCAAGCCGTTGGCGATGGCCGGGTCGTCCAGGTGCGCTTCGCCGTTGGACGCCTTTGCGTCTTCTATAGAGATCTTTTCTTCTGCCATCGTGCCCGTCTGAAGGTGGGAGAGTTCGTGTAAAAGTCTTTGGTGCGAGCTGATCGTccgctctctctctctctctctctctctctctctctctctctctctctg

Function

symbol description
slc1a5 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC1A5 (solute carrier family 1 member 5).

NR:

description
PREDICTED: neutral amino acid transporter B(0)-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152376 False 567 lncRNA 0.62 2 1789059 1828300
TU152377 True 769 TUCP 0.58 2 1777020 1789827

Neighbor

gene id symbol gene type direction distance location
LOC122359511 NA coding downstream 8949 1767053 ~ 1768071 (-)
cadm2b cadm2b,LOC107555276,LOC107724967,LOC107699225,LOC107592658,LOC107699843 coding downstream 198883 1382872 ~ 1578137 (-)
mipepa mipep,LOC107724959 coding downstream 409423 1348293 ~ 1367597 (-)
egln2 LOC107699221,LOC107724964,LOC107699839,LOC107745877,LOC107555273 coding downstream 460470 1296554 ~ 1316550 (-)
tmem160 tmem160,LOC107699215,LOC107699801,LOC107724946,LOC107726505 coding downstream 484057 1290803 ~ 1292963 (-)
si:dkey-202l22.3 si:dkey-202l22.3,LOC107566085,LOC107752291,LOC107699219,LOC107699177,LOC107592664,LOC107728162 coding upstream 49915 1878215 ~ 1882508 (-)
si:dkey-202l22.6 LOC107752287,LOC107699209,LOC107566080 coding upstream 61383 1889683 ~ 1896275 (-)
LOC122359198 dscaml1,LOC107752281,LOC107728164,LOC107699210 coding upstream 78554 1906854 ~ 2013913 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding upstream 201322 2029622 ~ 2048237 (-)
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding upstream 220343 2048643 ~ 2060046 (-)
G103114 NA non-coding downstream 32547 1741721 ~ 1744473 (-)
G103080 NA non-coding downstream 150287 1622684 ~ 1626733 (-)
G103003 NA non-coding downstream 291786 1481657 ~ 1485234 (-)
G103000 NA non-coding downstream 372160 1348194 ~ 1404860 (-)
G102970 NA non-coding downstream 486880 1289464 ~ 1290140 (-)
G103129 NA non-coding upstream 15112 1843412 ~ 1844995 (-)
G103140 LOC107752290,LOC107699229,LOC107728157,LOC107566086,LOC107592665,LOC107699176 non-coding upstream 39555 1867855 ~ 1870349 (-)
G103147 NA non-coding upstream 194942 2023242 ~ 2029167 (-)
LOC122359217 NA non-coding upstream 251772 2080072 ~ 2083265 (-)
G103155 NA non-coding upstream 273237 2101537 ~ 2133846 (-)
LOC122359153 lrrc7,LOC107709201,LOC107659039,LOC107692363,LOC107739104 other downstream 1626429 98628 ~ 150591 (-)
G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 other upstream 16699 1844999 ~ 1845494 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other upstream 310267 2138567 ~ 2161269 (-)
G103183 NA other upstream 379047 2207347 ~ 2291926 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other upstream 845501 2673801 ~ 2675825 (-)
nek3 nek3,LOC107598788,LOC107598810 other upstream 891582 2719882 ~ 2746124 (-)

Expression


Co-expression Network