LOC122359209 (lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626)


Basic Information

Item Value
gene id LOC122359209
gene name lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2756019 ~ 2870153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU152584
GGGCGCTATGCAAGCTTTCAGGGTATCCCAAGTGTGGAGTGGCGGATCTGTACAGTCATGACAGGGGTTGGATGCggcctgctgctgctggtggCACTCACAGCGGTCATGGGCTGCTGTATATCAGAACTGATCTCCAGAACAATTGGACGTGCAGCAGGGGGCATGCAGTTTCTTGGAGgtCTGCTCATTGGTTCAGGATGTGCTCTGTATCCTCTTGGGTGGGACAGTGAGGAGGTCCGGCAGACATGCAACAACAGCTCAGATCAGTTTGAACTTGGCTCTTGTCAAATCGGCTGGGCATATTACTGCACTGGGGCTGGCGCCACCTCAGCCATGTTGTTATGCACTTGGCTCGCTTGTTTCGCAGGGAAGAAACAAAAGCAATACCCATATTAGAAGAAACGACCGGAACTACAGTCTGAACCACAGCAGGACAGATCCCTTGGTGGAGACTGACTGTGCAGCCTATGGCATGATGACTTTACATTAATGCAACTTTGACTCAAAGACTCAAAATGCTCATCTGGACTTTGTGTGATTAAAATGAGCATGATTCAAAGAGAGAAGCAGTACTGCTCTCTAAAATAACTAGAGAGTATTTCATGTGAAAGGACCAattattgtgtgtatgtgtcttttGTTCTTGTCCACTGTTGTGAATATTACAGGTATGCTTTTTTAAGCTTTGGTTTAggtaaaaaatacactttagaTGAAGTCTGcatatataaagtattatatttaattatattttatatatactataaacatacAATTGAAACtaaatctgacatttaaaaaatgcttaattgattaaaattatatttacagtcaattaagatttaaaaaaatttaataatttgttggCACAGATAGCCTTTTGGGCACTGTGTCAATTTGCAGCACTGTTACGCTTTATCCTGGCTTGTGGATATTCCCTGATACCTTCCTCCCTCTCCCTCCCCCTTCATTTCCTCACAATTTAAGATGTGGTGTTTAAAACCACTGGGTTCATTGCAGAGTAAAGTAACTACTGTTGCATCAATAAAAGCGaaaacttcaaaaataaaactttaaaaagttgTACTAGTATGTTGTTATGGACAGCAGTGAAAAAGTTTAGTAATCATTATCTAAAAACATTTGACCACTCCAGAATAAACTATTCGCTGTTTACATAATGACAATTATGACgtgtattaaaaattatataaagtaataaaaaatatatatatagaattatatatacaaaCTTCATGTAAATTGTTATCAAGGATTTTTCAAGATATTAAtcattattgtgtttatatttacatatccattgtgaattacaataatatttatggttaatatctatatattgccttttttgtttcagcttaatttttacattaatgtatgCTAGAAATATAGAATACAATATATGTTCTGAAATATGACTCATTGGCATTGTGTTAAGAACCATTGCTTATTTGATTCATCTTGTGTTTGTgaataaaatctgtgtattaaca
>TU152585
GGGCGCTATGCAAGCTTTCAGGGTATCCCAAGTGTGGAGTGGCGGATCTGTACAGTCATGACAGGGGTTGGATGCggcctgctgctgctggtggCACTCACAGCGGTCATGGGCTGCTGTATATCAGAACTGATCTCCAGAACAATTGGACGTGCAGCAGGGGGCATGCAGTTTCTTGGAGgtCTGCTCATTGGTTCAGGATGTGCTCTGTATCCTCTTGGGTGGGACAGTGAGGAGGTCCGGCAGACATGCAACAACAGCTCAGATCAGTTTGAACTTGGTACTTCCTCATTACCTACAGCAGTggtcaatcaatcacttttatttacacagcacttttcaatttcaaaaaactttatttgtccCCAAGGGACAAGaaagattgtgtcaaagcactgaatagtataaaatagaagaatacaatgatagggatattataatgacgagattaaacTATTTCTTATTGAACACAGATATGGACTCTGTAATGAATTTGATGATAATCGCTGTTACGTGTTTGTtgttaaatggggatgtagtaACATTTAAGTGAGATGCAACTGCTGCGAAGAACTGCAATAAAGAATGTCCGTGAGGCAAACATAGATGTTCAatcaatctgcttttattttaacagtttctttttaaacagaagAGATAGATTCATAAActtaaaagagaagagaaaagaatgagtgacgccaaatcaaagaaaatataaaaagcaaaacaatccTAATAACTAAGGCCCCAACCCAACTAATCTAACtagcaaaaagaaaatgcagaaacAAAACCAAGGTCTTCAGCGTATCCGACGCCCAAATTAACTACACtacctaataaaacaaaagtacacgGGAGGCTGTCACTCCTAACCTAAGCATAACATGAAGTAAACTAAAGTTAAACTAACTTACCTTCCCCTTCTCCAGCATTCACTCAAACAGGTCACGAATGGCCGCAGCCATGCCGAGTTACCAATGCTAACAGCATAttaaagcttatatatatagttcactCAAATAGTCTCTAGAGTTAAGCAGAAATTGAATTGCCTTCGTGACACAATTAACAGAAAGGGGGTAACAAAAGCACTAATATGTAATGGCACAAATAACGAGATACAacccacgatcagatgatagaagcaggtcatttgtaactctaatgagagcagcctcagtactatggtatggtctaaatcctgattggaaatccttgAAGATACCTTTTTTTCCTaagatcttttttttcaatctcaAATTGAGCAAATATGACAATTATTAAGCAAACAAATGTCACACAGACACGTTTTGTCTTAAATGAGACAGGGTTTTGTTCCTTTGACATACATATAGGGAACATGTAACAGCCCTTAATAAATGTCTCACTGccatacttttttcttttttgaagataAAAAATCTCATGAATTCTGatattctgattttttttatttgaatagccTCCTGATCCCCATAAGCAACATGAGTCTGTTTAATTCCCTTCAGTCTGATACTATGTTTAGCATGAATGCCCTTGAACTTAACAGCGCAGAACACATAAATATTgtgattttctatttaattaattaatcatcattatgatgccattgtttttcttcctttaaTTAGCAGCTTTATTTGTActtataaaatattcaacacTTCACACAGATATTAGAAGCTGTAATGTTCGTTTGACTTTGGTATGAATGCTAACAACTTCATAttctgatttttgtttgtttggttgatTGTTGTCTTTcactacaaaaataacaatatacagTGTAATtccaaatattaacaaaaacatataatagTACATCagtgttactaaaataaaactaattcacCTAACGCAGCATGCGCCAAATAAACAGGAGCAAAATTCTACACTAACtggttaaaattattataatttaggaTCATTAAATATTGggaatatattttagattttagtgtTAAAGTGGCCTCTTTAAACTTTGTATGTTGCATACCATATGCAATGCGGAATATTTTTCtgtgccaaaaaaaagaaatttaaaatgaactttgcTTGAGAAATGGTTGAGGTGAGCAATTCACTGGCAGATTTTCTTGCAGAGGAATTACCCATATGCCAACAAACCAATGAGAATGTGAAACAAGAATAATGATTTATAACAATAAAGTGTAGGCACCAGAGCACATGTTTGAAGAAAAAGcatgacaaataaatatgtcATGGACAGTTACATATTTATACAGAACATTTAAACTTTGTTACACATCAAATGACATGGGATTTtatacaaaccggattcc
>TU152586
CACCGGACTCGAGTAGTATGACTGCTGCCACACTGCGCTCAGTACGTGGACACGGACAAATATCAATATTTCTTGTGTTTTCTGAAATACGCTGGGATTATTTTAGCGCTTATCTGCAGGagtgacagtaaaataaacagaaagatACAATCAGATCTCAGCAGACTCCATGTAAGgaatttaatgcatgttttctgCGCGCGTACAGCGAATTGCGCCCCGTTCAGCGGACAAAGTTTATTTCTTCTCCACGGTCCCACGAAGCTGGACCGGAATTTGAAATTAACACACCTGTCAGAATATATCGATGTGACAGCTCACAGAACCTTGGTGAAGACTGTATGGATGTAGACATCCCCTTTCCAACAACACaaaaggattttattttttttttgggtgtgaTATCCTCTTTTCGAAGTTCTCTTCTGGAATTGTGGCCaatatttaaagacatttctcCAGAATGGCATCCAGCCTTACATGTACTGGGATGATCTGGGCACTGGTGTCCCTGCTGAGTGCAGCAGCTTCCTGTGTGGGGTTCTTCATGCCCTACTGGCTGCTTGGCTCACAAATGGATAAGCCAGTGTCCTTCGGTACTTTTCGACGCTGCTCGTACCCCGTTCGGGGGATTATTTTAGCGCTTATCTGCAGGagtgacagtaaaataaacagaaagatACAATCAGATCTCAGCAGACTCCATGTAAGgaatttaatgcatgttttctgCGCGCGTACAGCG
>XM_043259510.1
CCAAGAGAGCGCGCACCGGACTCGAGTAGTATGACTGCTGCCACACTGCGCTCAGTACGTGGACACGGACAAATATCAATATTTCTTGTGTTTTCTGAAATACGCTGGGATTATTTTAGCGCTTATCTGCAGGagtgacagtaaaataaacagaaagatACAATCAGATCTCAGCAGACTCCATGTAAGgaatttaatgcatgttttctgCGCGCGTACAGCGAATTGCGCCCCGTTCAGCGGACAAAGTTTATTTCTTCTCCACGGTCCCACGAAGCTGGACCGGAATTTGAAATTAACACACCTGTCAGAATATATCGATGTGACAGCTCACAGAACCTTGGTGAAGACTGTATGGATGTAGACATCCCCTTTCCAACAACACaaaaggattttattttttttttgggtgtgaTATCCTCTTTTCGAAGTTCTCTTCTGGAATTGTGGCCaatatttaaagacatttctcCAGAATGGCATCCAGCCTTACATGTACTGGGATGATCTGGGCACTGGTGTCCCTGCTGAGTGCAGCAGCTTCCTGTGTGGGGTTCTTCATGCCCTACTGGCTGCTTGGCTCACAAATGGATAAGCCAGTGTCCTTCGGTACTTTTCGACGCTGCTCGTACCCCGTTCGGGATGAGAGGCAGGCTACAATAATGCTGGAACAGTGCGGGCGCTATGCAAGCTTTCAGGGTATCCCAAGTGTGGAGTGGCGGATCTGTACAGTCATGACAGGGGTTGGATGCggcctgctgctgctggtggCACTCACAGCGGTCATGGGCTGCTGTATATCAGAACTGATCTCCAGAACAATTGGACGTGCAGCAGGGGGCATGCAGTTTCTTGGAGgtCTGCTCATTGGTTCAGGATGTGCTCTGTATCCTCTTGGGTGGGACAGTGAGGAGGTCCGGCAGACATGCAACAACAGCTCAGATCAGTTTGAACTTGGCTCTTGTCAAATCGGCTGGGCATATTACTGCACTGGGGCTGGCGCCACCTCAGCCATGTTGTTATGCACTTGGCTCGCTTGTTTCGCAGGGAAGAAACAAAAGCAATACCCATATTAGAAGAAACGACCGGAACTACAGTCTGAACCACAGCAGGACAGATCCCTTGGTGGAGACTGACTGTGCAGCCTATGGCATGATGACTTTACATTAATGCAACTTTGACTCAAAGACTCAAAATGCTCATCTGGACTTTGTGTGATTAAAATGAGCATGATTCAAAGAGAGAAGCAGTACTGCTCTCTAAAATAACTAGAGAGTATTTCATGTGAAAGGACCAattattgtgtgtatgtgtcttttGTTCTTGTCCACTGTTGTGAATATTACAGGTATGCTTTTTTAAGCTTTGGTTTAggtaaaaaatacactttagaTGAAGTCTGcatatataaagtattatatttaattatattttatatatactataaacatacAATTGAAACtaaatctgacatttaaaaaatgcttaattgattaaaattatatttacagtcaattaagatttaaaaaaatttaataatttgttggCACAGATAGCCTTTTGGGCACTGTGTCAATTTGCAGCACTGTTACGCTTTATCCTGGCTTGTGGATATTCCCTGATACCTTCCTCCCTCTCCCTCCCCCTTCATTTCCTCACAATTTAAGATGTGGTGTTTAAAACCACTGGGTTCATTGCAGAGTAAAGTAACTACTGTTGCATCAATAAAAGCGaaaacttcaaaaataaaactttaaaaagttgTACTAGTATGTTGTTATGGACAGCAGTGAAAAAGTTTAGTAATCATTATCTAAAAACATTTGACCACTCCAGAATAAACTATTCGCTGTTTACATAATGACAATTATGACgtgtattaaaaattatataaagtaataaaaaatatatatatagaattatatatacaaaCTTCATGTAAATTGTTATCAAGGATTTTTCAAGATATTAAtcattattgtgtttatatttacatatccattgtgaattacaataatatttatggttaatatctatatattgccttttttgtttcagcttaatttttacattaatgtatgCTAGAAATATAGAATACAATATATGTTCTGAAATATGACTCATTGGCATTGTGTTAAGAACCATTGCTTATTTGATTCATCTTGTGTTTGTgaataaaatctg

Function

symbol description
lhfp Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; skin; and spinal cord lateral wall. Orthologous to human LHFPL6 (LHFPL tetraspan subfamily member 6).

NR:

description
PREDICTED: lipoma HMGIC fusion partner homolog

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152584 False 1517 TUCP 0.36 3 2756019 2868621
TU152585 True 2312 lncRNA 0.35 2 2759144 2868621
TU152586 False 745 lncRNA 0.45 3 2832054 2870140
XM_043259510.1 False 2184 mRNA 0.39 5 2756029 2870153

Neighbor

gene id symbol gene type direction distance location
zgc:172282 zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964 coding downstream 369149 2289831 ~ 2386870 (-)
scn4ba scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283 coding downstream 622871 2103839 ~ 2133148 (-)
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding downstream 695973 2048643 ~ 2060046 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding downstream 707782 2029622 ~ 2048237 (-)
LOC122359198 dscaml1,LOC107752281,LOC107728164,LOC107699210 coding downstream 742106 1906854 ~ 2013913 (-)
LOC122359190 cog6,LOC107670561,LOC107699813 coding upstream 170872 3041025 ~ 3099945 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding upstream 508004 3378157 ~ 3410866 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding upstream 554789 3424942 ~ 3462391 (-)
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding upstream 592340 3462493 ~ 3479800 (-)
mre11a mre11a,LOC107727241 coding upstream 967703 3837856 ~ 3927360 (-)
G103215 NA non-coding downstream 49951 2705686 ~ 2706068 (-)
G103214 lpar6a,LOC107593460,LOC107701423,LOC107708689,LOC107598790,LOC107674900,LOC107713545 non-coding downstream 50996 2704153 ~ 2705023 (-)
G103208 NA non-coding downstream 161577 2593448 ~ 2594442 (-)
G103196 NA non-coding downstream 293615 2461424 ~ 2462404 (-)
G103155 NA non-coding downstream 622173 2101537 ~ 2133846 (-)
G103362 NA non-coding upstream 280450 3150603 ~ 3151475 (-)
G103363 NA non-coding upstream 281575 3151728 ~ 3152664 (-)
G103371 NA non-coding upstream 489675 3359828 ~ 3360372 (-)
G103377 NA non-coding upstream 550158 3420311 ~ 3420777 (-)
G103404 LOC107699805 non-coding upstream 611010 3481163 ~ 3485630 (-)
nek3 nek3,LOC107598788,LOC107598810 other downstream 9895 2719882 ~ 2746124 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other downstream 80194 2673801 ~ 2675825 (-)
G103183 NA other downstream 464093 2207347 ~ 2291926 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other downstream 594750 2138567 ~ 2161269 (-)
G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 other downstream 910525 1844999 ~ 1845494 (-)
LOC122358351 thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934 other upstream 282840 3152993 ~ 3244266 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other upstream 881826 3751979 ~ 3773814 (-)
G103449 NA other upstream 945909 3816062 ~ 3816742 (-)
pcp4b NA other upstream 1636203 4506356 ~ 4572999 (-)
LOC122359119 NA other upstream 1837661 4707814 ~ 4709080 (-)

Expression


Co-expression Network