LOC122358351 (thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934)


Basic Information

Item Value
gene id LOC122358351
gene name thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3152993 ~ 3244266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU152714
GTTCCTCACAGCTGGAACAGTGGAAGCCCTGTCCTGTTAAACCCTGCTACAGCTGGAGGTACAGCGCCTGGTCTCCATGCAAATCTGAGGGTGCTCGGTGTGGAGAGGGCCTGCGCTTCAGGAACGTGTCCTGCTTTGTGTCTGATGGCTCGGGGAAGGATCCGGGCAGTATGGTGGATGAGGAACTGTGTGGAGACCTGGAGCAGACAGTGGATGGGGAAAAACAGATCATCCTGCAGGAGTCCTGCACTGTGCCCTGCCCAGGTGAGTGTTACCTGACAGACTGGACTGTGTGGAGCCCTTGTCAGCTGAGCTGTATCAGCGGAGACGATCTGGGCTTCGGTTCGGTGCAGGTGCGTTCTCGTGCCGTTCTAGCTCAGGAACCTGAGAACCTTCTCCAGTGTCCAGAACAGGAATGGGAAGCCAGGCCATGTACAGagGGTCAGTGTTATGAGTACAAATGGAAGACCGGTCCATGGAAAGGCTCATCTCgacaagtctggtgccagcgcTCTGATGGATTAAATGTCACAGGTGGATGCCCGTTGACAAGCGAGCCGGTGTCTGACAGATCATGTGACCCA
>XM_043258139.1
ATGGGGCTGACCAGCAGGGCAGCAGGAGGAAGGGGCACTTCAGCAGGGTCTCTTGCCACCACCTTCAGAGTAGCTCTGCTCTTTTTTGGGCTTTGGGATGTCCAGACTCAAACAGTCGCCAGCACAAAACCCACCTACATCTGGCAAACAGGGCCATGGGGTAGGTGCATGGGCAGTGAGTGTGGTCCGGGAGGAAGTCAAAGCCGAGCGGTATGGTGTGCCCATTCTGAGGGCTGGACCACGTTACACACCAACTGCCAGCAGTCAGAGCGGCCCAGCAACCAACAGAGCTGCTTCCGGGTGTGCGATTGGCACAAAGAGCTGTACGACTGGCAGCTAGGGGCCTGGAACCAGTGCGTGCCGGTGTCTATGCGCAGTGCAGGCGTGCCAAGGCCAGCGGTGTGCACTCGAGGCGAAGAGGGCATCCAGACGCGGGAAGTGGGCTGTGTACATAAATCAGATGGCGTTCCTGCAGAAGATGCCATCTGTGAATACTTTGAGCCCAAACCACGGTTAGAGCAGGCCTGTCTTATCCCATGCCCACGTGACTGCGTGGTGTCCGAATTCTCCCCATGGACATCCTGCTCTAAGAGTTGCGGAATGGGCCTGCAGAACCGTCTGCGATGGGTTCTAGCTCCGCCCCTCTTTGGTGGCTCAGCTTGCCCCAACCTAACAGAGTTCCGCACCTGCCAGCCTGGCCCCTGCCAGGGTGAGGAGAGCCTGCACAGCTTGAGGGTGGGACCTTGGGGCCCCTGCATGGCTTCGCCTATACGACAGGCCCGGGAAGCCAGAGAGCCCAAACAAGCCAGAGAGCCCAAACCTGAACGGAAAGTAAAGAGGGAGCGGCAGGCCAGGCAGGAACGCCAGGGCAAACGTCGcaagaacaaagagaaaaaagaggTGAAGGAAAACAAAGGAGAACGTGTGAAGGATAGGGTCAGGGTGAAGGGAAGGATGAGGGATCCTGAGACACGAGAGCTCATCAAAAAGAAGAGGACGAGGAATCGTCAGAATCGTCAGGGGTTGAAGTTCTGGGACCTGCAGGTGGGCTACCAGACCCGGGAGGTGACGTGTGTTCACCGGAGCGGAAGCACAGCGGTGCTCAGCCAGTGTAACCAGCAGACTCTTCCTGTGACATATCAAGCCTGTGTCATCCCAAAGGACTGTGAAGTGACCGAGTGGTCGGACTGGTCCGTCTGCTCAAAGGAGTGCTATGATCTGAATGGACGTAAGGGACAGAGGACACGCATACATCAGGTGAAGCAGTTGGTGGGTGGAGGAGCCGAGTGTCCTGAGCTAGAGGAGAGTGAACCGTGTTCTCCTCAAGGAGAAGGAATCCCGCCATGTATAGTGTATAATTGGCGAACCACAGAGTGGAGTGACTGCAGAGTGGATGTCCTCCTCAGCCAACAGGATCGTCGCCGGAGCAACCAGACAGGGCTCTGCGGAGGCGGGGTTCAAACCAGGGAGGTCTACTGCGTTCAAGCCCCAACCGAAACCTCATCTAACCTCAGCTCCCTCAAGAACAAAGACGGCTTGCGGCCAGTGAACAGTGACCTATGTTTGGGCATTTCTCCTAACACCACCCAGCTCTGCCATATTCCCTGTCCTGTGGAGTGTGAGGTGTCCTCCTGGAGCGCATGGGGGCCCTGCACCTTTGAAAACTGCCAGGATCAGTCCACAAAGAAGGGTTTCAAACTGAGGAAAAGGAAAATCATGAACGAGCCCACAGGTGGCACAGGAAACTGCCCCCACCTGACAGAAGCGATTCCCTGTGAGGAGCCCAGCTGCTACGAATGGCTGCTGGTGAAACTGGAGGAGTGTGTGCCCGACAATGACAAAGTATGTGGACCGGGAACCCAGAACCCACAAGTACAGTGCATCAACAGTGACGGTGACTACGTGGACCGGCAGCTGTGCCGGGACGCCATCCTTCCCATGCCTGTGCTATGCGATGTGCCCTGCCCCAAAGACTGTGTGCTCAGTCCCTGGACTTCGTGGTCTCTATGCTCAAATACCTGCTCAGGGAAGAACTCGGAGGGCAAGCAGACCAGATCACGCTCCATTCTGGCCTACAACGCTGGGGAAGGTGGAGGTCAGTGCCCCAACAGCAGCGCCTTGCAGGAGGTCCGCAACTGCAATGATCATCCCTGCACCGTGTACCACTGGCAGACGGGACCCTGGGGTCAGTGCATAGAGGACGCGTCCGTTCCGTCTGCCAACAGCTCGCTGAGCCGCACTGGAGCAGGAGTCGGCACTAATGATGCGTTCTGCTCCGTCGGAATGCAGACGCGCAAAGTCATTTGTGTCCGGGTCAATGTGGGCCAGGTGCCACCGAAAaaGTGTCCAGAGAGTCTGCGTCCAGAGACTGTTAGGCCGTGTCTTCTGCCCTGCAAGAGAGACTGCATTGTCACTCCTTACAGTGATTGGACGCCCTGTCCTTCCTCCTGCCAAACAGGTAATTCCTGTCAAAAGAAACAATCAAGGAAACGCATTATCATACAGCTTCCAGCTAACGGGGGCCAAGACTGTCCAGAAGTGCTCTTCCAGGAGAAGGAATGTGATGCTGGATCTGTTTGTCCAGGCTACAGGTGGAAAACCCACAAGTGGCGCAGGTGTCAGTTGGTTCCCTGGACCATTCGTCAGGAGAGTCCTGGAGCACAAGAGACCTGTGGACCAGGACTACAGGCTAGAGCCGTATCGTGTAAAAAGCTGGATGGTGGACCTGCAGACGTTGCTGCCTGTCTTAAGTTGGCGGGTCCTATGCCTCAACTCACTCAGTCCTGTCAGCTTCCATGCCAGGATGACTGCCAGCTGACCACCTGGTCCAAATTCTCATCCTGCGCTGCTGATTGTGTGGGTGTCCGAACTAGGAAAAGAACTCTTGTTGgtaaaagcaaaaagagagaacagtgtaaaaacacacagatgtatCCTCTGAGCGAAACCCAGTACTGCCCCTGCAACAAGTACAATGCCCAGCCCGTGGGGAACTGGTCTGACTGCATCCTGCCCGAGGGCGGGCGAGTAGAGGGCCTTTTGGGTATGAAAGTGCAAGGTGATATCAAGGAGTGTGGCCAGGGTTACCGGTTTCAAGCCATGGTGTGCTATGACCAGGACAGCCGCCTCGTGGAGACGTCACGCTGCAACAGTCACGGTTATATAGAGGAGGCGTGTATCATCCCGTGTCCGTCTGACTGTAAGCTCAGCGAATGGTCAAATTGGTCCCGTTGCAGTAAGTCCTGTGGCAGTGGAGTCAAAGTGCGGTCCAAGTGGCTTCGAGAGAAACCTTATAACGGTGGCAGGCCCTGCCCCAAACTGGACCATGTCAATCAGGCTCAGGTGTATGAAGTGGTACCATGTCTGAGCGACTGCAGTCAGTATGTCTGGGTGGCTGAGCCGTGGAGCGTCTGGAAGGTCAGTAATGTTGACCTGAAGGAGAACTGTGGGGAAGGTGTACAGACGAGGAAAGTCAGgTGCATGCAGAACACTGTCGATGGACCTTCAGACCCTGTAGAAGACTATCTCTGTGATCCAGAGGAGATGCCGCTTGGAGCCAGAGAGAGCAAGTTGCCCTGTCCTGGGGACTGCGTTTTGACTGACTGGGGCCCTTGGAGTCGATGCCAATTGCCATGCAATGTGAATAGTACAAGGCAGAAGACCGCCAGCCCTATACGTCAGCCTGGGGATGAGAAACAGTGTCCTTCAACTACAGAGAAAGAAACGTGCACCTTGAACACCAACTGCTTCCATTACTCCTATAATATCACAGACTGGAGCACATGTCAGCTGAGTGAACGGGCCGTATGCGGGGTTGGATTCAAGACACGCATGCTCGACTGCGTTCGCAGTGATGGCAAGTCTGTGGACCTCAAGTTTTGCGAGGAGCTCGGTCTCGAAAAATGGCAGATGAACGCTTCCTGTGTGGTCGAGTGCCCTGTCAACTGCCAGCTGTCTGATTGGTCGTCCTGGTCTGAATGCTCTCACACCTGCGGTCTAGCTGGGAAGCTCTGGAGAAGGAGAATCGTGATCCAGGCCTCTCAGGAGACGACGCCGTGTTCCTCACAGCTGGAACAGTGGAAGCCCTGTCCTGTTAAACCCTGCTACAGCTGGAGGTACAGCGCCTGGTCTCCATGCAAATCTGAGGGTGCTCGGTGTGGAGAGGGCCTGCGCTTCAGGAACGTGTCCTGCTTTGTGTCTGATGGCTCGGGGAAGGATCCGGGCAGTATGGTGGATGAGGAACTGTGTGGAGACCTGGAGCAGACAGTGGATGGGGAAAAACAGATCATCCTGCAGGAGTCCTGCACTGTGCCCTGCCCAGGTGAGTGTTACCTGACAGACTGGACTGTGTGGAGCCCTTGTCAGCTGAGCTGTATCAGCGGAGACGATCTGGGCTTCGGTTCGGTGCAGGTGCGTTCTCGTGCCGTTCTAGCTCAGGAACCTGAGAACCTTCTCCAGTGTCCAGAACAGGAATGGGAAGCCAGGCCATGTACAGagGGTCAGTGTTATGAGTACAAATGGAAGACCGGTCCATGGAAAGGCTCATCTCgacaagtctggtgccagcgcTCTGATGGATTAAATGTCACAGGTGGATGCCCGTTGACAAGCGAGCCGGTGTCTGACAGATCATGTGACCCAGTTCATGACAAACCTCGCTCCTACTGCACCGAGGCTGGGGTGTGCGGCTGCGAGGAGGGTTACACTGAGGTGATGACTTCCGATGGAGTGCTGGATCAGTGCACGCTCATCCCGGTGCTTGAGATCCCCACCGCAGGAGACAGCAAGGCCGGCGTGAAGACGATGAGCCTCAACCCCACTCAGCCCACCGCCAACCTACCAGGCCGCTCCGGTCGCACCTGGTTCCTCCAGCCCTTCGGACCCGATGGCAAACTGAAGACCTGGGTGTACGGCGTGGCAGCTGGAGCTTTTGTACTGCTAGTGTTCATTGTCTCTATGACTTACTTAGCCTGTTTTTGTATGCTGGCCCGGCGCTCTCCTCCGAGCCCGGACCCTTCCATTACCTCTGTGGTTTGGGTCGGACCCAACGACCAAGAGCTGATATATACCTGCCCTGACTGTCAGCGCATTGAGACTCAGTTCAACTAGAACTATCAGCTCAGTCCCTTCCCTCATGGCCTTGCCCTGTGGCCAATCATGTCCATCACCTATGCCTTCTCACAGTCACATGTGCCTTTCTGACCAAT

Function

symbol description
thsd7aa Acts upstream of or within several processes, including axon extension; glomerular filtration; and glomerular visceral epithelial cell development. Predicted to be located in cell projection and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in nervous system; neural tube; and pectoral fin. Orthologous to human THSD7A (thrombospondin type 1 domain containing 7A).

NR:

description
PREDICTED: thrombospondin type-1 domain-containing protein 7A-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0043534 blood vessel endothelial cell migration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152714 False 584 TUCP 0.56 5 3156930 3163548
XM_043258139.1 True 5207 mRNA 0.56 33 3152993 3244266

Neighbor

gene id symbol gene type direction distance location
LOC122359190 cog6,LOC107670561,LOC107699813 coding downstream 53048 3041025 ~ 3099945 (-)
zgc:172282 zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964 coding downstream 766123 2289831 ~ 2386870 (-)
scn4ba scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283 coding downstream 1019845 2103839 ~ 2133148 (-)
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding downstream 1092947 2048643 ~ 2060046 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding downstream 1104756 2029622 ~ 2048237 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding upstream 133891 3378157 ~ 3410866 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding upstream 180676 3424942 ~ 3462391 (-)
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding upstream 218227 3462493 ~ 3479800 (-)
mre11a mre11a,LOC107727241 coding upstream 593590 3837856 ~ 3927360 (-)
LOC122359034 LOC107726111 coding upstream 779547 4023813 ~ 4042596 (-)
G103363 NA non-coding downstream 329 3151728 ~ 3152664 (-)
G103362 NA non-coding downstream 1518 3150603 ~ 3151475 (-)
G103215 NA non-coding downstream 446925 2705686 ~ 2706068 (-)
G103214 lpar6a,LOC107593460,LOC107701423,LOC107708689,LOC107598790,LOC107674900,LOC107713545 non-coding downstream 447970 2704153 ~ 2705023 (-)
G103208 NA non-coding downstream 558551 2593448 ~ 2594442 (-)
G103371 NA non-coding upstream 115562 3359828 ~ 3360372 (-)
G103377 NA non-coding upstream 176045 3420311 ~ 3420777 (-)
G103404 LOC107699805 non-coding upstream 236897 3481163 ~ 3485630 (-)
G103416 NA non-coding upstream 293942 3538208 ~ 3547028 (-)
G103435 NA non-coding upstream 354700 3598966 ~ 3603766 (-)
LOC122359209 lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626 other downstream 282840 2756019 ~ 2870153 (-)
nek3 nek3,LOC107598788,LOC107598810 other downstream 406869 2719882 ~ 2746124 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other downstream 477168 2673801 ~ 2675825 (-)
G103183 NA other downstream 861067 2207347 ~ 2291926 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other downstream 991724 2138567 ~ 2161269 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other upstream 507713 3751979 ~ 3773814 (-)
G103449 NA other upstream 571796 3816062 ~ 3816742 (-)
pcp4b NA other upstream 1262090 4506356 ~ 4572999 (-)
LOC122359119 NA other upstream 1463548 4707814 ~ 4709080 (-)
G103825 NA other upstream 2193782 5438048 ~ 5438947 (-)

Expression


Co-expression Network