G103404 (LOC107699805)


Basic Information

Item Value
gene id G103404
gene name LOC107699805
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3481163 ~ 3485630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU152767
GGTTTCCAAGCTTCCCTTAATGGTAAAAGGTAAACATATCTTggaattttctgaaaatatatcttaatgatactgtgaaatattattacaatttaaataaaacttttctattttaatatatttaaatttattaatgtgatgttAAAGTGTATTAGTCATGTCTTAtaatcttcagaaatcattcttcgATCAATTGTTATTGATGCTCATTTATtaatagtgttattttattgttatgttaCTGCTATTTTATGGAAACCATAATAAATTCCATAGttcataaaaacagcatttaatttattttattaacaattttataCATTCTTTCTCAACAAAACTTGTATTCTTTTAATCACCTAAATTTTGAATACTAGTGTCAGGCTTTCCATAAtaattccacaaaaaatattagccATTCATAAACACGTTTTagcaaaacagcatattaataatcatgTGACAAAGAATACTGGATTAATGcttgatgaaaattcagctctgccaccacaggaataaactacattccaaaaaacattattttaagttgcaataatataaaacgtttttactgcatttatgacccaataaatgcagacttgttAAGCATACAAggtctcttaaaaaaaaaaaacttgaattatTCAAACTTGATATGACTCCTTTATCAACAATACCTTTCGTTCTCCTACAGAGGCTAAATCTGTGCActtctgaaagttttttttaatttatttaatttaattttagtttcatgTATGTACAGTTTCTTCTATACCTTTATATACaattgtcttattttattgtattttaacattagAATAAGAGTGGCAAATGTACAAATGTAGTCTATAAATATctacaattttaataatgaataataaaaaacaattaatatatatacatatatatatatatatacacatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaacaaaaataaataaataaaatgactttttgttacACTAAAACTACAGCATTGCCAATGCTGAAATGCTGAAGCccttaaagaacaaaaaaggttaagtcatatttaattgataaataattgtttatctGTGCTCTATAGACAATTTTGGATACCTTACCGATATTGCTTGAATGCAATATGGGTACATATATCTAcatatatctgttttttttatccatcaacaggtcaaaatttactgCATGGTGTTTAAAATAGATCAGTACAAATAACTAATACATAGTGTATTTTATAggctatataataaaaatgtagccTACTTTAAAAGAATTCCTTTGCACACATGTGCTTACTCTTAATGTCATGTAGGTCCTTacaaaacaatttataataaacagatgTGTCTGTGGCAGATAATTATTATCTGTTGAGAAGGCATGCATATAACCCAAATTGGAAACACATGTACCAAATAAATTCCTTTATGCACAACATAAAATCTCAATTAACGTTGAATCCACAGATGGCCCAATGGACCAATGGCATTGCACCATCATGTTGTTTTAGTGGAACTGGAATGTGTGCTTAAAAGACTGAATATAATGATCTGTTTGGTTCTCTAGAGCACATGGGATGGAAACAGTGCTTTCCTGCTGGAGGTTAATCGAGTTCTTCCTGGACAACAGATTTACTAGATACCAGAGTCTTTTTGGGAATTTCCCCCTCAGGTCCCAACAGGTCCCATGCATTCTATACTAGTTTAAAACACCTATCTAAATCATTGTTGTTTATCTTCTCCAACACTTTCACTTTCTGCTCAATTATACAACTCTGTCTTCTTGGTGTATGTTGTCGCCAAAAGCTAATGAAGTTTTCACCaacgaaaaagaaaagcaatggATCCAGGCAACTGTTTCCTGAGGCCAGACAGTGTGTAATGACTGCGGCCTTTCTCAGACTTTCAATATAATTACAGGACTCGTCATAACCATTGTTCTGAATGTTCATTTCAGCCTCTAAAAAAAGAGTTCGGACGACATGATATGGCATAAAGCATGTGAGAAAAATCAACAGAACAATAATGATGAGATAACAGGACTTCTTGTGATTGAACTGAGATCTTTGATTCTGCCTAATCTTTCTTAGCTTTAACAAATACAAGGCTGCAAAAATGTAACACACTGAGATGATCACGAAGGGCATAACGAagcctaaaaacaaaacacctcgATTCAACATGATGATGGTCCCCACCTGGGATGGTCTCAGGTCCAGGCATTTGGTCTGATTAGACTCCACATAAGTTCCAGCTTTCAGAAGCGGGATGGATGCCAAAGACACGATCAGCCAAATGACAATGCATAATGCCCAGGCTCCCCTAGAGCTTTGCCAGCGCACGTATGTGAATGGCTTAACGATGGCCACAAAACGAACCATGCTCAGAACCGCCAGGAAGTAGATGCTGCTGTACATGTTGATGTAGAAGATGTAGGACATGATCCGACAGGTGATGTCTCCAAAAGCCCAGTAGTCCATGAGATAGTAGGTGGCTCGAAACGGCAGTGAGCACACCATCATGAAATCAGATAGGAGGAGATTGAGCATGAGGATGTTGACAGGAGAAAAAGATGCTTTTCTTCTGAATGAtgaggaaatgaaaaagaacagaGACATGAGGTTGCCTACAAGCCCAAGGGAAAAGATGGAGAGATAGGCTATTGGGTAGATGGTGTGCTTAAAATCACTGATGGAGCAATTTGTGAAGTTCGATGAATTCATTGTTAGGTTGAGGAATTGTGAGAAGGCAGCCAAAAACCCAAATCCACAGAGTCCAATTCTTCACAAACGTAAGCTAAATCCTGTGCAACAGTAAGAGTGGTGAGAGGAAGCCGTATAAAGACATGACTC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: cysteinyl leukotriene receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152767 True 2908 lncRNA 0.33 3 3481163 3485630

Neighbor

gene id symbol gene type direction distance location
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding downstream 1363 3462493 ~ 3479800 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding downstream 18772 3424942 ~ 3462391 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding downstream 70297 3378157 ~ 3410866 (-)
LOC122359190 cog6,LOC107670561,LOC107699813 coding downstream 381218 3041025 ~ 3099945 (-)
zgc:172282 zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964 coding downstream 1094293 2289831 ~ 2386870 (-)
mre11a mre11a,LOC107727241 coding upstream 352226 3837856 ~ 3927360 (-)
LOC122359034 LOC107726111 coding upstream 538183 4023813 ~ 4042596 (-)
pik3cb pik3cb,LOC107655300,LOC107726123,LOC107567258,LOC107747314,LOC107598784,LOC107671515 coding upstream 559117 4044747 ~ 4076667 (-)
foxl2a LOC107655294,LOC107579733,LOC107726117,LOC107598792,LOC107677070 coding upstream 598161 4083791 ~ 4088018 (-)
rinl LOC107741520,LOC107677047,LOC107655292,LOC107567256,LOC107598786,LOC107726114 coding upstream 680879 4166509 ~ 4187844 (-)
G103377 NA non-coding downstream 60386 3420311 ~ 3420777 (-)
G103371 NA non-coding downstream 120791 3359828 ~ 3360372 (-)
G103363 NA non-coding downstream 328499 3151728 ~ 3152664 (-)
G103362 NA non-coding downstream 329688 3150603 ~ 3151475 (-)
G103215 NA non-coding downstream 775095 2705686 ~ 2706068 (-)
G103416 NA non-coding upstream 52578 3538208 ~ 3547028 (-)
G103435 NA non-coding upstream 113336 3598966 ~ 3603766 (-)
G103438 NA non-coding upstream 122219 3607849 ~ 3609465 (-)
G103452 NA non-coding upstream 339649 3825279 ~ 3825555 (-)
G103454 NA non-coding upstream 340924 3826554 ~ 3826758 (-)
LOC122358351 thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934 other downstream 236897 3152993 ~ 3244266 (-)
LOC122359209 lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626 other downstream 611010 2756019 ~ 2870153 (-)
nek3 nek3,LOC107598788,LOC107598810 other downstream 735039 2719882 ~ 2746124 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other downstream 805338 2673801 ~ 2675825 (-)
G103183 NA other downstream 1189237 2207347 ~ 2291926 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other upstream 266349 3751979 ~ 3773814 (-)
G103449 NA other upstream 330432 3816062 ~ 3816742 (-)
pcp4b NA other upstream 1020726 4506356 ~ 4572999 (-)
LOC122359119 NA other upstream 1222184 4707814 ~ 4709080 (-)
G103825 NA other upstream 1952418 5438048 ~ 5438947 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_00271933_00272986 NA coding CI01000092 null 271388 ~ 272986 (-)