scn4ba (scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283)


Basic Information

Item Value
gene id scn4ba
gene name scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2103839 ~ 2133148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258402.1
ctccctctcactcGTCCCGTGCCTCTGCAGTGGCTCATTCTTTCCTGCGCCGGCTACAGACACACACGGCCCCCCTCCACCCCTCCTCTGGCCACTCATCCCAGCATGCGGCACCTATTCAGGGGTAAGACCGACAGTCTCTTCCCCAGACTGAAAGTGGAGCTCTGCGCCGCAGCAGCCGCTAAATGAATGCAGCGTTTCCTGCGTCTACAACCACGCTGAGTGAGACAGAGTATCAGCGAGACACTGAGCCATCAGAGGATCAGGTGCTGCCTCCGTATTCCTCGCTCTCTAGTTCCCTCTCCCTCCCTTACCGGGACATACTGCAAAGGAGGATCGAGGACAGGGAGGTACTCGGCAAAGACTTCCTCAGCTGAAAGTCGCGACGGGTCACCGTGTGGCCCCTCAAAACCTACAGTATCCCAGCAAAGACGTACAGCGGAGGACTTGACcaaggacagacagacagacagcgggCATGGAGTTGCAAGACAGAAGATCATTCCTGCACAGGTGTGCGCGGTCCGGCGATGTGGTCCACGCCGGTCTGGTCGTCACACTTCTGATTGGAGTGTGGTACGCTCAGGCACTGGAGGTGAACACAGGCAAGATCCATTTTATAGAAGTGATGAATGGAAGTTCAGTGCTCTTACCCTGCACTTACGCCAGCTGCATCGGCATTAAAAACCTTTACTTCAACTGGCAGTTCAAAGACAACGGGACGCTGATTAAGCTCTGCGAGGCCATCATCCCAGCAGAAGGAGTGGAACCTAATGTAAAAATCTATCATGAGCGGGTGGAGTTTGTCGGCTCCAGCAAACAGAATAACATCTCCATCTTACTGCATAACGTCACCTTTGAGGACCAGGGAGATTATATCTGCTTCGCCCGCAACCCCAAGGAGAAGGAACGCAACCATAGTGCAGTTTTCACTCTTTATGTGGTGGATGAATTGAAGGAGGTGGACAACACGCTGACCCTCATCATTGTGTCTGTGCTCGGCGGAGTCATAGGTCTCATCATTCTCATCATGGTGGTGAAAGCTGTAGTCATCGCCGTTCTAAACAAGGTCCAGGAGAAGAATAAAGAGTGCCTTGTGAGCTCTTCAGGGAATGACAATACAGAAAACGGCCTCCCAGGATCCAAAGCAGACAGCAAACCAACACCAAAGGCATGAaaagagcatgtgtgtgtacatatacgAGCATATGTATACATGCAAACGTAATCATAACAGAACGAAAGAAAGTCATAACAATGGACAGTTTTAATCTCTTTAtctcatgagaaaaaaaaatgcaacatataaatatgtggaaatatatatatatatatattttagattgtgcttgaggaaaaatacaaaagtgcTGCAGGCTGGATCACACACCCTTTGCTTGACTGAAacggcataaaaaaataatcagaaagcAGATGACGGGTGACGCTTTGGTGTGCTTGCATTCTGTTCTTGCCTGTGagacacagcacacacacactgccttcTTCACGAACTGCCGTATCCTTTCAACGCTCGACAGCACAAGACCCACATAACGAAATGTTTGCGATAAACTTCCAGTGCAACTTTACACATCTTCACACTGCATTCCAAACGATCCCGAGGTGGAAGTcagtaacaaaacaaacaccttTATGAAAAATGCTAAACAACTTACACGTTAAAAACCAAGGGTGCCTCTTGAAATTGGACTATGTTTACCACCAATCCAAGCAGCTAACCGAGACTGATTAATAACCACTCCTACTAATTTTACAAGTGATTTTGAGATCATAAAGAGCAGGATGCGAGTGCACTTGAAGGCCGGAAACACACTCTACGCAATAGCACCTTTTGTGGCAATGCTGATATTACaacaacaatacattttgtgtgtgaaaataagGTTGTACAGAGTGTTTTTCATGGCTAAAGCGTTGGAAAGGGAGTAAAAATAAGAGAACTTACAAGAGTTGTAGATAAGGTGTGTATATCCAGCATCCAGCCCAGCACGGTTtattctatttctttctttttcagttttttctgctTTAGATAAAACACAGGTGCCTGTAAACGCTTCAAGCTCCACATGCTTCCCGGGAGCCTtcaaatgctatataaataagttaaacaatgctcacatcaaaaaaaaaaaaaaaaaaataaacaaaaataataatataaaaaatccctagaaaaaaaacccattaaaatataaagacaatCCCCAGAAACCACATCCCTGTAGAAAATGAATGATCTTCTGATGCTGCTTTCAATAACCAATAAATTTTCCTAATGCATGTGAAGAATTTTATACAGTACATCTAGTGTACTATGTATCCATTTCTCCGAATCGTGTTCTCCTGTCTCTTCTCACACAAACGATCAATCTGTGCTTGTCGTATACAATGTCACAGTTCATCTTGTACATGTCCAACATACAGGCATGAAGGGCCACTGTAGCTAACTGGTAAAGCTTATGACATCCAAACTTCACAGAACACGATGCTAACTGCTAATGTTGACATTTGGCATTCGAACTAGCAAGCTAGCAACTTCAGTGTGTGCTAAACTGCACCGATCCTCACAGATGCTGTGCTGATGCTTACGTTTTAATATCATCGTACAAAGACACAAGACTTCTgtgacaaaatataataaataatgataccTCACATGCCTCTCAATGGCTAATTACAGAGCACATGTAACTAGCGTTAGCATAAAACCTTTCAGATCTTCTCGTGGGTCAGATTAGCTTGTTGCTAATTCCAGAAAAGGCACGAATGGTGGAAAATAATTGTGGGATTTTGTTTCCTAGACGTTCTGGAGCCGCGAAGCGAGCTCTCGCTTATCAAAACAAACCAACTTTCCAAATCTTTCAGTAATTGTTTAAGATTTAAGTGCCAAAATAGAAATGCTAGTTGGACGGTGGGTGGTTTACCGTTGCTTCCATCTTGTTTCGTTTGTCTTCCGCTTTCCTTTTTGTGTCGGAAACCCCATAAATGCACAATGCTTGTTCATATCCATATCTGGTTtaagtataaatgtatttgacaAATTCATAACATGCGATGAATGTCACTTTTGCGATTACGccgcaaaaaaaaacaaaaacaaacaaaaaaatgcaatgaaaccCTAGTCTTCCGCCATAACCCAAAGATGAATGTACACAGTGGTTGCAGTTATGGCAGAGTTCAGAGGGGTCGTTTCTGGGCACTTTATTCATAAAGATATATGTAACAGTGTTTTGAATGCTCATGGTGTGTGTAGAGCGAAGTGAGAACGATGTAGAAATTATCGCGAGATAGTGTAGTTGAACAGCTGCGACGGTGATACCGAGAATAGCAGAACGGGAATAATTTGTCTCTATGAATGGCTATATCTCTTGTATGTGCACATATTAGCAGTCTTCCAAATCACTTGACTCTCGTTTAGAAATCAGGGGCTTCGGCAATCTCAACTGTTTGTGATTCTTCGACAGAGCGGTATGAAATCCTAGCTTAAAAATTCAAGTATTTATCATTTAAGTTTGCATCGGATTCCTTTGAACCGCATCCGTAAGCGTGCGTTAAAGTCAGCCGTGCTTTGGAGAAAGGGTTTGGTGCCGCTCTGTCTGTCAGATGCACTGTACAGTAATGGCGGTTAGCGTTGAGTGTCCTAACTGTTGTCGACCTGTTCGCATTGCCTCTTTGAATCATTTACGGCAGAATGTTTCACCATGTTATGCTTCTTACAGCTCGTTGCCTTTTGTCATTTGCAGCTAGTGTATTTGATGAAACGATCACATAAACAAGGAGATTACGTAGATCagcaatactgtaaaaaaaaaaagaaaggaaaatgtaaaaaaaaaaaaaaagtaaatacatgaGTGCCTAGGCTCTCGAGAATGGACTGTTGTATGCAAATGGGCAACTTGAACTTTTATTagagcttctttttttattatttagctatttttaccTATTATGTTACCTAATTCCTGTTCTGCTttgcatatgtatttttaacCCCCTAAATATTTAGCGTTTGTTTAATGATAGTGAAGTGGTTCTCAACCGGTTTTGCTTTGCATTGGACGTCAAGTGAGACTCGTGcgttaaaattgaactggaaaatCGAAATATAGTAGtatttattgcagtttttttcaCACTTTCAAAGGTCTTCGCGTGATCCTTTGCCTGTGTTACGATACAATAATTCAGGAGTATTTTTCATGCCGTCTGTGTCTGGCCTGTGATCCGTTTCTGGTCGGCAGCCAGTTGAGAGCCACTGTTGTAATGCGTAGCTGTGTAGATGCATAGATGTCTTGGTCTGGTTGCTTACGTCTGCTGGTTGGCTCAGATCAGCCGACTCTGGGCTCATTTGGTAATGTCTGGGCAGGAAAAAGCTGCATAGCTGCAGTGTTGCAGTGCAAAACCGCATCCTAAGAGTGCAGCACTGAGCCATGAATCTGCACACGTCAGGCTGTGTTTCTCTTTGGATCTGAGGGGTTATAGCAGGGAAAACCGAAGGGACATGTCTGATttctatcatttaaaaaaaaaataaaatctttcaaaaaggCAAACATAAACGTCCTTTATACCGGAAGGCTGTATAAAATCATGTCACATGTCACAACTACTAATTTAAGGTAAATATCTACAGCTGCATTTTTAGGCAGGCTGCTTGATCTCAGTAGAAAGAAAATACGAGATATGAACTATAAAATGTGCTTTGTGTGCACAGTTTTTCCTCTCTATTTTGCAGTGAGAATTTGTTCTGCTGCACTTGCGTGGGATGTCCAAACCCACTTGCACTCTTTTAAAATTCTTGTACTATATTCAGTTGAGAGTTTGGCTCTCTCCGATCTGATCCCATTGAGGAGCAGGTTGACCTTTTGTAAAGTAGACTTACAAAATAATGGATTTCAAAAAAACTGGATTTCACTGCCTGGGTGACTCACTCTCACTGCCAAGCCAAGAGAGTGTGAGGACTGCTATGTGCTCCAACACATTCCAAGACGCTCTGTCTCCCTCTAGTGGATTTTAAGACTtccaacatttttaaagaatcgaGGATTCCAGTCACACCGGCTATGTTTGGAATGGCACATTAGCATACTGCTTACTGCATACTCAGTACGGATCGAATATCGTCTGCGTTTTAAAAATGGTACGCAGAACAGAATAATAAGCTTCAATGTCCTTACATTTCATTCAGTTAATGGTGTCCTGTtatcattttatgaaataaagttCATTTTACATGTTCAGTTTCCAACGATGTTGCCAAGTCTGCGATTTTACGGTGGAATTAGGGGTTTCAATCTGGGAATTACAGAGATCTCAAAGTGTCCTTCAAGGGAGGGAAAACCCACaggaagtaaaataaataaataaataaataaataaa

Function

symbol description
scn4ba Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in atrium; brain; cardiac ventricle; eye; and musculature system. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).

NR:

description
PREDICTED: sodium channel subunit beta-4

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04848 SCN4B; voltage-gated sodium channel type IV beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258402.1 True 5413 mRNA 0.42 5 2103839 2133148

Neighbor

gene id symbol gene type direction distance location
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding downstream 43793 2048643 ~ 2060046 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding downstream 55602 2029622 ~ 2048237 (-)
LOC122359198 dscaml1,LOC107752281,LOC107728164,LOC107699210 coding downstream 89926 1906854 ~ 2013913 (-)
si:dkey-202l22.6 LOC107752287,LOC107699209,LOC107566080 coding downstream 207564 1889683 ~ 1896275 (-)
si:dkey-202l22.3 si:dkey-202l22.3,LOC107566085,LOC107752291,LOC107699219,LOC107699177,LOC107592664,LOC107728162 coding downstream 221331 1878215 ~ 1882508 (-)
zgc:172282 zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964 coding upstream 156683 2289831 ~ 2386870 (-)
LOC122359190 cog6,LOC107670561,LOC107699813 coding upstream 907877 3041025 ~ 3099945 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding upstream 1245009 3378157 ~ 3410866 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding upstream 1291794 3424942 ~ 3462391 (-)
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding upstream 1329345 3462493 ~ 3479800 (-)
LOC122359217 NA non-coding downstream 20574 2080072 ~ 2083265 (-)
G103147 NA non-coding downstream 74672 2023242 ~ 2029167 (-)
G103140 LOC107752290,LOC107699229,LOC107728157,LOC107566086,LOC107592665,LOC107699176 non-coding downstream 233490 1867855 ~ 1870349 (-)
G103129 NA non-coding downstream 258844 1843412 ~ 1844995 (-)
G103090 NA non-coding downstream 277822 1780318 ~ 1826017 (-)
G103196 NA non-coding upstream 328276 2461424 ~ 2462404 (-)
G103208 NA non-coding upstream 460300 2593448 ~ 2594442 (-)
G103214 lpar6a,LOC107593460,LOC107701423,LOC107708689,LOC107598790,LOC107674900,LOC107713545 non-coding upstream 571005 2704153 ~ 2705023 (-)
G103215 NA non-coding upstream 572538 2705686 ~ 2706068 (-)
G103362 NA non-coding upstream 1017455 3150603 ~ 3151475 (-)
G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 other downstream 258345 1844999 ~ 1845494 (-)
G103094 slc1a5,LOC107752279,LOC107699227,LOC107699184,LOC107566078,LOC107592660 other downstream 275539 1777020 ~ 1828300 (-)
LOC122359153 lrrc7,LOC107709201,LOC107659039,LOC107692363,LOC107739104 other downstream 1953248 98628 ~ 150591 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other upstream 5419 2138567 ~ 2161269 (-)
G103183 NA other upstream 74199 2207347 ~ 2291926 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other upstream 540653 2673801 ~ 2675825 (-)
nek3 nek3,LOC107598788,LOC107598810 other upstream 586734 2719882 ~ 2746124 (-)
LOC122359209 lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626 other upstream 622871 2756019 ~ 2870153 (-)

Expression


Co-expression Network