LOC122358662 (LOC107746703,LOC107746702,LOC107757194,LOC107757176,LOC107672089,LOC107672099,LOC107683402,LOC107559005,LOC107588020)


Basic Information

Item Value
gene id LOC122358662
gene name LOC107746703,LOC107746702,LOC107757194,LOC107757176,LOC107672089,LOC107672099,LOC107683402,LOC107559005,LOC107588020
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17169838 ~ 17170930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258527.1
ATGCAAAGTTACAAGAAGGTATTTTTTCAGAACAAACACCAAACTGCAATGAGTTCTTTAAATGCGAGTTTTCACCAGAATATCTCCATTGTTCATCCTGAATACTTTTTCATCATTGGACTTTCAGGTATACCTTACAGCagttattactatatatttttatttattgtttattttattactatgaTTGGGAACTCTGTAGTTCTTCTCATTATTGCTCTTGAAAGAAGTCTGCACAGTCCAAAGTACTTTGGTGTGTTTAACTTGGCCTTGTCTGATCTTGGTGAAACTAATGCACTAATTCCTAACATGATGAAGACTTTGTTATTTGACTCACGGTACATCTCCTACAATGCTTGTTTAGTgaacatgttttttgtgtttctcttcagTTCCATGCAGAGTTTCACTCTTGTTGTTCTGGCATATGATCGTTTGATTGCCATTTGTTTGCCCTTAAGATATCATTCTCTTGTAAACAATACCACTATGATTTGTATTTTGTCAGCAGTTTGGGCATTTAATTCTTCAGTTGTGGGCTTGATGGTGTTTTTTATTAACCAACTTTCTTTCTGTGAATCTATTGTGATACAGAGTTATTTTTGTGATCATGGACCAGTGTATAGGTTGGCATGTAATGACAGTAGCATTAATAAGATGTTTGCGTTTCTCATCTCAGCTTTATACAATGTAGTACCAATGATCCTTATAGTTCTTTCATATATGGGCATTTTTCTCGCTTTAATCAAAATTACAACTTGGCAAGGACGTTTAAAAGCTCTGAAGACCTGTGTTTCTCACTTGTTGTTAGTAGGAATTTATTTCCTGCCCATATGCTTCTCATACATTGCTGCAGTGTTGCTTTTTCTCACACCCAATACAAGGGTCATCAGCACATCTCTGGCATATGCTATTCCACCGATGCTAAATCCTATCATTTAcgttttaaacacagctgaaataaaagacatcattagaaaaatgtttaaaaacagattaGAGAACATGTCAAATTAG

Function

NR:

description
PREDICTED: olfactory receptor 1M1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG:

id description
K04257 OLFR; olfactory receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258527.1 True 1017 mRNA 0.35 2 17169838 17170930

Neighbor

gene id symbol gene type direction distance location
LOC122359235 LOC107558995,LOC107683401 coding downstream 5150 17163702 ~ 17164688 (-)
LOC122358659 LOC107588076,LOC107746689,LOC107746686,LOC107672079,LOC107746690,LOC107757238,LOC107588082,LOC107683396 coding downstream 30236 17138661 ~ 17139602 (-)
LOC122359041 nf1,nf1a,LOC107682681,LOC107672107 coding downstream 107815 17017628 ~ 17062023 (-)
zgc:171927 zgc:171927,LOC107672095,LOC107588334,LOC107683438,LOC107592930,LOC107757416,LOC108425914 coding downstream 207366 16960873 ~ 16962472 (-)
vezf1b vezf1b,LOC107756309,LOC107672112,LOC107587351,LOC107682824,LOC107592962,LOC107746692,LOC108425912 coding downstream 213668 16943182 ~ 16956170 (-)
LOC122359225 LOC107757194,LOC107683402,LOC107559005,LOC107757176,LOC107746703,LOC107672099,LOC107588020,LOC107588315 coding upstream 3239 17174169 ~ 17175170 (-)
LOC122359228 or111-10,LOC107672099,LOC107746703,LOC107588315,LOC107757194,LOC107559005,LOC107588020,LOC107757176,LOC107683402 coding upstream 5714 17176644 ~ 17177627 (-)
LOC122359243 or111-10,LOC107588020,LOC107746702,LOC107672089,LOC107588315,LOC107672099 coding upstream 18177 17189107 ~ 17190126 (-)
LOC122359179 or111-7,LOC107746671,LOC107672090,LOC107588010,LOC107682482 coding upstream 21234 17192164 ~ 17195589 (-)
LOC122358666 LOC107683396,LOC107592967,LOC107757238,LOC107746689,LOC107672079,LOC107746690,LOC107588082,LOC107746686,LOC107588076 coding upstream 121644 17292574 ~ 17293512 (-)
G107435 NA non-coding downstream 64454 17105114 ~ 17105384 (-)
G107431 NA non-coding downstream 85600 17083721 ~ 17084238 (-)
G107429 NA non-coding downstream 93981 17075630 ~ 17075857 (-)
G107217 NA non-coding downstream 885662 16164441 ~ 16284176 (-)
LOC122358383 NA non-coding downstream 1021100 16141997 ~ 16148738 (-)
G107448 NA non-coding upstream 137720 17308650 ~ 17315028 (-)
G107474 NA non-coding upstream 317338 17488268 ~ 17488488 (-)
G107490 NA non-coding upstream 389667 17560597 ~ 17560892 (-)
G107491 rxfp2,rxfp2b,LOC107683406,LOC107558987 non-coding upstream 391590 17562520 ~ 17562770 (-)
G107492 rxfp2,LOC107683406,LOC107558987,LOC107757108 non-coding upstream 392604 17563534 ~ 17565065 (-)
LOC122359261 msi1,LOC107712472,LOC107550984,LOC105899087,LOC107687968,LOC107753116 other downstream 67841 17086659 ~ 17101997 (-)
LOC122358654 msi2b,LOC108425902,LOC107587484,LOC107666187,LOC107682662,LOC107756385,LOC107592958 other downstream 94358 17063408 ~ 17075480 (-)
nf1a nf1,nf1a,LOC107682681,LOC107672107 other downstream 328100 16785025 ~ 16841738 (-)
msi2b msi2b,msi2,LOC108425902,LOC107682662,LOC108435815,LOC108277875,LOC107587484,LOC105028669,LOC106603292 other downstream 407774 16551191 ~ 16762064 (-)
LOC122359003 LOC107714165,LOC107588126 other downstream 743424 16412636 ~ 16426414 (-)
G107442 NA other upstream 26359 17197289 ~ 17199728 (-)
hsph1 NA other upstream 307334 17478264 ~ 17489834 (-)
frem2b frem2b,LOC107704782,LOC107730863,LOC107582282,LOC108433801,LOC107683412,LOC107752721,LOC107587905,LOC108277768 other upstream 692516 17863446 ~ 18149659 (-)
G107615 si:dkey-285b23.4,LOC107575069,LOC107748074 other upstream 878388 18049318 ~ 18050583 (-)
LOC122358476 LOC107748074,LOC107575068,LOC107559010,LOC107575384,LOC107575069,LOC107730809 other upstream 894944 18065874 ~ 18075553 (-)

Expression


Co-expression Network