LOC122359190 (cog6,LOC107670561,LOC107699813)


Basic Information

Item Value
gene id LOC122359190
gene name cog6,LOC107670561,LOC107699813
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3041025 ~ 3099945 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259451.1
TATGGTTACTCAAAACAGCTTCCTGGAGGTTGACGTGGATGTTGATGATGGCAGAAACTAAAGTAGAGCTGTCTCTTGATTCATTAAACCATCATACCTCTAACAGCAGCGGGAATGCATCATCACAGCCCAACAACCCTCTATCCAGAAAACTTAACAAGATCCTGGAGACCAGGCTGGATAATGACAAGGAGATGCTGGAAGCATTGAaatctctgtctgtgtttttcactgAAAACAGTCTGAGAACCAGGAGGAACCTCAGAGGAGACATAGAGAGACGCAGCCTGTCCATCAATGAAGAGTTTGTACGAATATTTAAAGAAGTGAAGGAGgaaCTAGAGAGCGTTAATGAAGATGTTCAGGCCatgagctcctgctgtgaagAAATGACCAACAGATTAAAGGCAGCCAAAGAACAAACCCAGGATTTGATTGTGAAAACCAACAAACTTCAGGGAGAGAATCAACGCTTGGAGGTTCGGGCTCAGGTGGCCCAGGCATTCTTGTCAAAGTTCCAGCTGTCTACCACTGAAATGACAACATTACGTTCTGCACGAGATGGTCCCATCACTGAGGACTTCTACAGAGCACTGAACCGTGTGAAGAACATCCATGAGGATGTGAAGGTCCTACTGAGAACTAACCAGCAAACAGCAGGGCTGGAGATCATGGAGCAGATGGCTGTGTTACAGGAGACCGCATATGAGCAGCTCTATCGCTGGGCTCAGAATGAGTGCAGAGGGTTGACTCAGGAAACATGTGATATTCCTCCCGTCTTGAGTCAAGCTATGGAATCTCTCCAGGATCGTCCTGTTCTTTATAAGTATACACTGGATGAGTTTGGAACGGCTCGGCGGTCTGCTGTGGTCCGAGGCTTTATTGACGCCCTGACCCGTGGAGGACCGGGTGGCACCCCAAGACCCATAGAGATGCACTCTCATGATCCAATGAGATATGTTGGTGACATGTTGGCCTGGCTCCACCAAGCCACAGCCTCAGAGAAGGAGCACCTGGAAGCCTTGCTCAAGCAAGTTACCGTGCAAGgAGTTCAAGAATACATGCAGGAAGTAGGCCACATCACTGAAGGAGTGTGCAGACCACTTAAGGTGCGAATTGAGCAGGTGATAATTGCAGAGCCAGGTGCTGTTCTCCTGTATAAACTTTCCAATCTGCTCAAGTTCTACCATCACACCATCAGTGGCATCATGGGTACCAGTGTTTCCTCCCTGTTGATGACCATTGATGAAATGCACATGTTAAGTAAGAAAATGTTCTTCAACAGCCTTAGTCTCCACGCCAGTCGCCTCATGGATAAAgTAGAGCTTCCTCCTCCTGATCTGGGTCCCACTGCCTCCCTTACTCAGACTCTGTCTCTCCTTAGGGAGGTATTGGCCTCCCATGATTCATCAGTTCTTCCTCTGGATGCCCGTCAAGCTGACTTTGCACAGGTATTGTCCTGCATTCTTGACCCATTGCTGCAGCTGTGCACAGTATCAGCTAGTAACCTGGGCACAGCAGATATGGCCACCTACATGGTGAACTCCTTATACATGATGAAGACCACATTAGCACTCTTTGAATTCACAGACAAACGCTTGGAAATGCTGGAGTTTCAGATTGAGGCTCACTTGGACACTCTAATCAATGAGCAGGCGTCTTTTTACGTGCTGAACAGAGCTGGGCTTAGTCACATCTACAGCTGCGTCACAGCACACACCGCAGAACAGGGTGCCTTGGCCAACCTCCCTGGAATGGACAGCACATCTTTAAAAACAGCCATGGTCCAGTTTGACCGTTATTTGGCCTCTCCTGATACATTTGTGATGCCGCAACTCAACTTCCTGCTAAGCGCTGCTATAAAggagcagattttcaaacagtccaCAGAGCTGGTGTGTCGTGCATATGGAGAGGTGTACAAAGGTGTCACCCACcctataaatgcatataaagatGCAGAGTCTGTCTTGCACAGAACCCCACTGCAGGTACAAACCTTGCTGTCCTGAACCGTACAAACACACCTTTGTTCTGGGACTGACACTGTTCAAATACTCGTCTGGTGATGGGGAGGGGTTTATCATTGTTAATAGTTAATTATTTGAGACAAAGACACTCAATTATAAGTGTATACGCAAAAATATAGTCTTGATTTC

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 6-like isoform X2

GO: NA

KEGG:

id description
K20293 COG6, COD2; conserved oligomeric Golgi complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259451.1 True 2159 mRNA 0.47 21 3041025 3099945

Neighbor

gene id symbol gene type direction distance location
zgc:172282 zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964 coding downstream 654155 2289831 ~ 2386870 (-)
scn4ba scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283 coding downstream 907877 2103839 ~ 2133148 (-)
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding downstream 980979 2048643 ~ 2060046 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding downstream 992788 2029622 ~ 2048237 (-)
LOC122359198 dscaml1,LOC107752281,LOC107728164,LOC107699210 coding downstream 1027112 1906854 ~ 2013913 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding upstream 278212 3378157 ~ 3410866 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding upstream 324997 3424942 ~ 3462391 (-)
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding upstream 362548 3462493 ~ 3479800 (-)
mre11a mre11a,LOC107727241 coding upstream 737911 3837856 ~ 3927360 (-)
LOC122359034 LOC107726111 coding upstream 923868 4023813 ~ 4042596 (-)
G103215 NA non-coding downstream 334957 2705686 ~ 2706068 (-)
G103214 lpar6a,LOC107593460,LOC107701423,LOC107708689,LOC107598790,LOC107674900,LOC107713545 non-coding downstream 336002 2704153 ~ 2705023 (-)
G103208 NA non-coding downstream 446583 2593448 ~ 2594442 (-)
G103196 NA non-coding downstream 578621 2461424 ~ 2462404 (-)
G103155 NA non-coding downstream 907179 2101537 ~ 2133846 (-)
G103362 NA non-coding upstream 50658 3150603 ~ 3151475 (-)
G103363 NA non-coding upstream 51783 3151728 ~ 3152664 (-)
G103371 NA non-coding upstream 259883 3359828 ~ 3360372 (-)
G103377 NA non-coding upstream 320366 3420311 ~ 3420777 (-)
G103404 LOC107699805 non-coding upstream 381218 3481163 ~ 3485630 (-)
LOC122359209 lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626 other downstream 170872 2756019 ~ 2870153 (-)
nek3 nek3,LOC107598788,LOC107598810 other downstream 294901 2719882 ~ 2746124 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other downstream 365200 2673801 ~ 2675825 (-)
G103183 NA other downstream 749099 2207347 ~ 2291926 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other downstream 879756 2138567 ~ 2161269 (-)
LOC122358351 thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934 other upstream 53048 3152993 ~ 3244266 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other upstream 652034 3751979 ~ 3773814 (-)
G103449 NA other upstream 716117 3816062 ~ 3816742 (-)
pcp4b NA other upstream 1406411 4506356 ~ 4572999 (-)
LOC122359119 NA other upstream 1607869 4707814 ~ 4709080 (-)

Expression


Co-expression Network