LOC122359376 (or113-2,LOC107731216,LOC107677077,LOC107567574,LOC107667480,LOC107735052)


Basic Information

Item Value
gene id LOC122359376
gene name or113-2,LOC107731216,LOC107677077,LOC107567574,LOC107667480,LOC107735052
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 5344520 ~ 5345472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259663.1
atgaATGTACTTCCTGCGCAAAATATCTCATTCAAAGACTTCAAATTAATTGGTTTCTACAGTCTAGGAGAATGGAGGCCGCTTTTATTTCTGCCTttctttctgatgtttttattggCTATCACAGCTAATTCTGTTCTCATCTATTTAATCAAATCTCAAAAGTCCCTGCATTCTCCTATGTATGTACTAATAGGTGTTATGGCTGTGCTGGACTTGATAATGCCCATGTTTTTTGTACCTAACATGCTTCTTAGTCTCTTATTCAATTTGAGTGGGATATCTCTAACAGGTTGTTTGATGCAAATGTTTGGTCTTCATTTTATTGGAACATTCCAATCCACTTTGCTTTTCTGGATGGCACTTGATCGTTACTTTGCGATATGCAGACCCTACTATCATAAATGCATGGAAATCCCTAACTTTCTAAAGTTTGTTGTTGGGCCAGTAATCAGAAATGGACTTCTGATTGTCATCATGGTCTCTCTGGCTGGAAGACTGTCATTTTGTTTAACGAATGTTATTGATCACTCTTTTTGTGAACACATGGCACTGGTTCAGTTAGCATGCGGTGACATATCAATTAATAACATTGTAGGACTTTTGGCTGCTTTCCTTATAACAACAACTGATTTTATTCTCATtaccatttcttatgttgtgaTTTTTTCCTCTGTGTTTAGATCTGGTAAGGCTCATTTAAAGGCCATCAATACCTGCATTACTCACATAATTATTATGACACTTACTTTGATTTCTGCTTTGATTGCGTTTTTGTCATACAGAAtaagaaataacatttcttcTAGTAACCGTATATTTATAAGTATCTTATACTTACTTTTTCCAAGTTGTCTTCACCCACTAATATATGGATGGAGAACAAAAGAAATACGACATACATTTCTAAAGTTTATAAACAGTGCAAAGGTCTTTCCTATTAAACAGTGA

Function

NR:

description
PREDICTED: olfactory receptor 52K1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259663.1 True 951 mRNA 0.35 2 5344520 5345472

Neighbor

gene id symbol gene type direction distance location
LOC122359249 or113-2,or113-1,LOC107567575,LOC107567566,LOC107677053,LOC107731216,LOC107746256,LOC107677077 coding downstream 4485 5339085 ~ 5340035 (-)
LOC122359374 LOC107677053,LOC107567566,LOC107746256,LOC107746257 coding downstream 7762 5335620 ~ 5336758 (-)
LOC122359429 LOC107569473,LOC107757692 coding downstream 12934 5330639 ~ 5331586 (-)
LOC122359542 NA coding downstream 28320 5315283 ~ 5316200 (-)
LOC122359358 LOC101886557 coding downstream 158336 5184784 ~ 5186184 (-)
LOC122359464 LOC107567575,LOC107735052 coding upstream 3573 5349045 ~ 5350004 (-)
LOC122359379 LOC107667465,LOC107575284,LOC107577417 coding upstream 16244 5361716 ~ 5363953 (-)
LOC122358541 NA coding upstream 229881 5575353 ~ 5576425 (-)
LOC122359397 LOC107677066,LOC107595779,LOC107677064,LOC107724938,LOC107575091,LOC107741819 coding upstream 309354 5654826 ~ 5655743 (-)
LOC122359398 LOC107571844,LOC107571843,LOC107755134,LOC107741822,LOC107677072,LOC107574905,LOC107561297 coding upstream 314447 5659919 ~ 5660836 (-)
G103816 NA non-coding downstream 153471 5190822 ~ 5191049 (-)
G103813 NA non-coding downstream 165031 5179282 ~ 5179489 (-)
G103796 NA non-coding downstream 585303 4745047 ~ 4759217 (-)
G103756 NA non-coding downstream 666289 4677596 ~ 4678231 (-)
G103754 NA non-coding downstream 677167 4662596 ~ 4667353 (-)
LOC122358345 NA non-coding upstream 219268 5564740 ~ 5565397 (-)
G103888 NA non-coding upstream 293908 5639380 ~ 5647017 (-)
G103889 NA non-coding upstream 294183 5639655 ~ 5647576 (-)
G103895 NA non-coding upstream 405500 5750972 ~ 5778005 (-)
LOC122358398 NA non-coding upstream 414031 5759503 ~ 5759953 (-)
LOC122359119 NA other downstream 635440 4707814 ~ 4709080 (-)
pcp4b NA other downstream 771521 4506356 ~ 4572999 (-)
G103449 NA other downstream 1527778 3816062 ~ 3816742 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other downstream 1570706 3751979 ~ 3773814 (-)
LOC122358351 thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934 other downstream 2100254 3152993 ~ 3244266 (-)
G103825 NA other upstream 92576 5438048 ~ 5438947 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044,LOC107569072 other upstream 391984 5737456 ~ 5749751 (-)
LOC122359408 LOC107744036,LOC107704290,LOC107562996,LOC107680065 other upstream 449331 5794803 ~ 5801081 (-)
G104011 NA other upstream 800701 6146173 ~ 6146517 (-)
mmp28 mmp28 other upstream 1765784 7111256 ~ 7119286 (-)

Expression


Co-expression Network