zgc:172282 (zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964)


Basic Information

Item Value
gene id zgc:172282
gene name zgc:172282,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640,LOC108433964
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2289831 ~ 2386870 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259862.1
GTCGCAAGTTTGTGCCATCCGCGCTGACAGACCGCCTGTTTGTGTGCGCGCACAGGAGCAGGGCTTCAGGCGGAGGCATGCGCGCTTATTGGCAGTGAGCGGTGAAGATCTACCCCTATAACGCCCACTCTTCAGCGTGCTCCAAGACGAGCAGACGCTCCGCGCGTATTTGTCTTCTAACTCACCCATCTATCAGGATGATATTGCGAGAGGCTTCCTCCTCGAGGATCTACACCTCTGACGGATCGGATTGTCCTGTATTTCAGCGGCACGCGGATATGTATTCTTTACTGCGAGGCGAAACTGAAAAGCCAAGGAAACTACATATCTGATTCACCGCACCTGGGAAGAAGGGTCGAGCTCAAGAATGGGAACTATTTGTGCGCGAAAGCAAAAGTAGAGGCAAATCGCGTTCAGTGAAGATAATGAAagcttgggtttttttttttttagtttttggttttttttggcaCACATTGTGAAGAACATTAAGCTACTGTGCAACCGTTCCGAACCCATCCGATCTTTCCCCCGGTTTTAATCAGAGCTATCCCACCCCGTCCCCGTCAAACGACCACCGGCTTTCACTTTTCACCGGAGCAGAAGGAGCATCTCTGTGGAaagGTGGATGGAGCTTCGAAATCTGCAGCGCTGTCAGTCCTAGCTCCGAGCGCCAGATACTCTCATGTTCCTGGGCCAATGCCTCGAGTCTCTGCTCTCTGCCAGTCTGTCCACATGTAGCAGCCCGAGTCTACAGCCATCCTCAGCGCTAACGCCGCCGGTGGAGCCTTCATGAGCATCTCCAGCAGTTCTACGCTTCTCAGATAGAGTTCCCCCGAGAGATGGAGTGGCTGATCTTCTCCCTGCTGGTGCTGGCTGTGTCTGCGTCGGGACAGCTGTGCCCGAAGCGGTGCATGTGCCAGAACCTGTCGCCATCTCTAGCCATCCTCTGTGCCAAGACTGGCCTGCTTTTTGTGCCAACAGTCATTGACCGGCGTACAGTAGAGCTGCGTCTCACTGAGAACTTCATCACGGCGGTAAGGAGGAGGGACTTCGCAAACATGACCAGTCTCCTGCACCTGACGCTGTCCCGCAATACCATCAGCCAGATTATGCCTTACACTTTCGCCGATCTTAAGCGACTTCGGGCGCTGCACCTAGACAGCAACCGCCTGAGCGTTGTCACGGACGACCACTTCCGAGGACTCACCAACCTTCGGCACCTTATCCTTGCCAACAATCAACTGCACAACATCTCCCCGCATGCGTTTGATGACTTTTTGGGGACTCTCGAGGACCTGGATCTCTCATACAATAACCTTGTGGACATACCTTGGGAGACTGTAGGACGCCTCACCAACGTGAATACTCTCAACATGGACCATAACCTCATAGAGCACGTACCACTAGGAGTCTTTTCAAACCTAAACAAACTAGCCCGTTTGGATATGACATCCAACAAGCTAAAGAAAATACCCCCTGATCCCTTGTTCCTTAGGATACCAGTTTATGCCAAGTTAAAAGGGTCACCCCTTTCCTCCCTCGTCCTAAGTTTTGGAGGGAACCCACTACATTGTAACTGTGAGCTACTCTGGCTAAGGAGGTTAACGAGGGAGGATGACTTGGAAACTTGCGCATCACCTCCGGACCTTACGGCAAAGTACTTTTGGACCATACCAGAGGAGGAGTTCATCTGTGATCCCCCTGTGATTACAAGGAAATCTCCCAAAACCTTCGCCATGGAGGGCCAGCCCACCAGTCTGAAATGCAAGGCCAATGGGGACCCAGACCCAGACGTTCACTGGATCTCCCCGGAGGGCCGTCTAATCGCCAACACCTCCCGTACTTTAAGCTTCAGCAACGGGAGCTTGGAGATCAACATCACTTCACTGAAGGATACAGGAGTCTTCACCTGCATTGCATCTAATGCTGCGGGGGAGTCTACAGGCACGGTGGAGTTGGTGGTCAACCCGTTGCCGCACTTAGCTAACAGTACTAACCGGATCCGAGAACCTGATCCAGGACCATCCGACATTCTAACCTCCGCAAAGTCGACTTCATCCGTAAGCAATGAGACCAGGTCTCAGGAGAGGAAGGTGGTACTTGCTGAACTTACGGCAAATTCTGCACTCGTCAGATGGCCTTCGCAACAACATTTCCCAGGAATCAGGATGTATCAGATTCAGTACAACAGCTCGGCTGATGACACTTTGGTCTACAGAATGATTCCCTCCACGAGTTACGACTTCCTGGTGCGAGACCTCGTATCCGGACGTGAGTACGACCTGTGTGTTCTGGCCGTCTACGATGACGGCGTGACCTCGCTGACCGCCACGCGTCAGGTGGGCTGCGTCTCGTTCGTCACGGAGACGGAGTACAGCCAGTGCCAGTCGCTCCGCAGCCACTTCCTGGGCGGCACCATGATCATCATCATCGGAGGGATCATCGTGGCCTCCGTGCTCGTTTTCATCATCATTCTCATGATCCGGTATAAAGTCTACAGCCATCACGCGCCGGATTCCGGCAAGGGGACCGCCATGACAAACGTGCGCTCGCAGACCAACGGGGGGCAAGCGGCGGGGCAGGTCCCGCGCTCCGGCTCCAAAATCGTGGAGGGCCACGAGGCCACGGGAGCGGGTTTAGGGGGGGCCGCCGCTAGTTTAAAAGACTCCACGGCCATGGTGCTGGTCACAGAATCTGAAACAACTGTGCAGATATCAGACATGATCGCCGAGGATATAGTCTCCCCCTCACAAAAGCACCATCCCAGGACTTGTATAGAGCTCAAGAGACGGCCTTCTCTGTCCTCTAAAGAGGGTACAAGCACAGACTCACCAGGAGACACAGCAAGCCCACAGGTCAGTGACGAGAAGAAGGTTCAGCGAGATTGGAGCGACTTTAAAATTTGATGACTCCTTCCGCTGTCCCGCAAGAGACAGCCATCAGCCCTAAACAAGCTGGCCAGGTCATCTGATTATGGGGAGGAATATGGAATAATTTGTCTGAACCCCGACTGGACTTTCTCCCCGGAGCATTCACCCCTCACACTGTATTCCAAGGACTCTCCAACCGTTTCCTACCGAGACATAATTTGAGGACTCCACTACTGCAACCAATGGAAACGGAGCACAATAATTGTTCTCCATCGCTGGCTTTTGGAACATATTGCCTTTTACATCCCCACGGACGGGACTGTATATGCCGACTACAGTATGCATTGTTTCCTGGACGGTCTGGGTTGAAGAACGACACCTCGCTGAAGGGATATTCATCATCCTCCACCCATTCAATCATGCAAACTGCACCAGTGAGCGGAAACTCAGACGGGACAAAGTAAACAGCACGTCTGTGCTTTCTGCACTTTCATCAATCTGCCCTTCTGCGTCTCCTCCGGCTTTACAGTGTCAGTCGTGACCCTCTCGTCCAGTGAGAACTCAAGCCTAAAGGACTCAAAGCAGCAGCAAACCGACGGCAGCAGTCCCGGATGGGAGCACAAGTATATCTGTTAATTTGAGTTGTTTggtcactttttattttgccattttctttTGTAACTGTACATAAATCAATTTAAGATCTTATAGTTTTGTACATGTAATTTTTAtggtgtgtgatttttttttaataaaataaaagactggCTCAATTCTAAAGGGTTAG

Function

symbol description
zgc:172282 Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in cell surface. Predicted to be integral component of presynaptic active zone membrane.

NR:

description
PREDICTED: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X1

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259862.1 True 3660 mRNA 0.52 7 2289831 2386870

Neighbor

gene id symbol gene type direction distance location
scn4ba scn4ba,LOC107564054,LOC107699188,LOC107728166,LOC107699235,LOC107561493,LOC107752283 coding downstream 156683 2103839 ~ 2133148 (-)
tmprss13a LOC107699232,LOC107564057,LOC107752289 coding downstream 229785 2048643 ~ 2060046 (-)
fxyd6 LOC107699233,LOC107752282,LOC107561492,LOC107574918,LOC107699187,LOC107728170 coding downstream 241594 2029622 ~ 2048237 (-)
LOC122359198 dscaml1,LOC107752281,LOC107728164,LOC107699210 coding downstream 275918 1906854 ~ 2013913 (-)
si:dkey-202l22.6 LOC107752287,LOC107699209,LOC107566080 coding downstream 393556 1889683 ~ 1896275 (-)
LOC122359190 cog6,LOC107670561,LOC107699813 coding upstream 654155 3041025 ~ 3099945 (-)
LOC122358542 LOC107740375,LOC107593464,LOC107670538,LOC107726642,LOC107561479,LOC107699815 coding upstream 991287 3378157 ~ 3410866 (-)
mtus2b LOC107670531,LOC107593466,LOC107561476,LOC107699816,LOC107726712,LOC107740389,LOC107740390 coding upstream 1038072 3424942 ~ 3462391 (-)
rcbtb2 rcbtb2,LOC107593467,LOC107561474,LOC107699818,LOC107670520 coding upstream 1075623 3462493 ~ 3479800 (-)
mre11a mre11a,LOC107727241 coding upstream 1450986 3837856 ~ 3927360 (-)
G103155 NA non-coding downstream 155985 2101537 ~ 2133846 (-)
LOC122359217 NA non-coding downstream 206566 2080072 ~ 2083265 (-)
G103147 NA non-coding downstream 260664 2023242 ~ 2029167 (-)
G103140 LOC107752290,LOC107699229,LOC107728157,LOC107566086,LOC107592665,LOC107699176 non-coding downstream 419482 1867855 ~ 1870349 (-)
G103129 NA non-coding downstream 444836 1843412 ~ 1844995 (-)
G103196 NA non-coding upstream 74554 2461424 ~ 2462404 (-)
G103208 NA non-coding upstream 206578 2593448 ~ 2594442 (-)
G103214 lpar6a,LOC107593460,LOC107701423,LOC107708689,LOC107598790,LOC107674900,LOC107713545 non-coding upstream 317283 2704153 ~ 2705023 (-)
G103215 NA non-coding upstream 318816 2705686 ~ 2706068 (-)
G103362 NA non-coding upstream 763733 3150603 ~ 3151475 (-)
scn2b scn2b,LOC107752284,LOC107699236,LOC107564053,LOC107699190,LOC107561494,LOC107728168 other downstream 128562 2138567 ~ 2161269 (-)
G103130 prkd2,LOC107699186,LOC107728165,LOC107699228,LOC107566079 other downstream 444337 1844999 ~ 1845494 (-)
G103094 slc1a5,LOC107752279,LOC107699227,LOC107699184,LOC107566078,LOC107592660 other downstream 461531 1777020 ~ 1828300 (-)
LOC122359153 lrrc7,LOC107709201,LOC107659039,LOC107692363,LOC107739104 other downstream 2139240 98628 ~ 150591 (-)
LOC122359207 nicn1,LOC107691891,LOC107564394,LOC107708487,LOC107678153 other upstream 286931 2673801 ~ 2675825 (-)
nek3 nek3,LOC107598788,LOC107598810 other upstream 333012 2719882 ~ 2746124 (-)
LOC122359209 lhfp,LOC107593461,LOC107740377,LOC107691645,LOC107751385,LOC107577306,LOC108426961,LOC107670626 other upstream 369149 2756019 ~ 2870153 (-)
LOC122358351 thsd7aa,LOC107722152,LOC107670038,LOC107698991,LOC108410784,LOC107712624,LOC107555944,LOC107566934 other upstream 766123 3152993 ~ 3244266 (-)
LOC122359312 fndc3a,LOC107740387,LOC107593468,LOC107726703,LOC108426957,LOC107699795,LOC108277863 other upstream 1365109 3751979 ~ 3773814 (-)

Expression


Co-expression Network