G110553


Basic Information

Item Value
gene id G110553
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8302044 ~ 8307979 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU163339
TGGCGAAGCCTCGCGCGCTATTCTTTATTCCCACTGCTGCTGATTAACGCTCGCTCTGCACGAAACGACGCGCCGCGTCCACACGGAAGATCACGATGCAGCTCTGTAACCGAGCATCGCTCACTGCGTAGCTTTCGCGGCCATGGCTTTACTGTTGTGTTTACATAACTTTTCATGAATGAGTCAAATTAAACATGGCCGATTGGGAGAAAGGGGAGGAAGTGGTTTCAAAGGGAAGAGgcAGAAACGATCCCCTCTGTACGTTCTGTGTGTAGGAGGAGCTGAGGGCCCGGGTCCATAATGCTTGACAGATGGGCTATAGAATGAGAGAAGCTTGCCAAGGAAAGCAGATGTCA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163339 True 356 lncRNA 0.51 3 8302044 8307979

Neighbor

gene id symbol gene type direction distance location
bambib bambib,LOC107755694,LOC107566715,LOC107681758,LOC107694225,LOC107707732,LOC108430169,LOC107580862 coding upstream 138362 8159353 ~ 8163682 (+)
wacb LOC107681794,LOC107694227,LOC107707733,LOC107755692,LOC107566709 coding upstream 143292 8147977 ~ 8158752 (+)
rab18b rab18b,rab18,LOC107566717,LOC107708473,LOC107681801,LOC107691240,LOC107550439,LOC108430170 coding upstream 222782 8074319 ~ 8079262 (+)
yme1l1b yme1l1,yme1l1b,LOC107708459,LOC107566723,LOC107747521 coding upstream 234598 8058435 ~ 8067446 (+)
npc1 npc1,LOC107708536,LOC107747515,LOC107550433,LOC107691157,LOC107681682,LOC107566718 coding upstream 380004 7905797 ~ 7922040 (+)
LOC122360800 LOC107596770 coding downstream 58472 8366451 ~ 8370575 (+)
osbpl3b osbpl3b,LOC107685532,LOC107678127,LOC107550826,LOC107596655 coding downstream 68545 8376524 ~ 8425757 (+)
gsdmeb dfna5 coding downstream 119755 8427734 ~ 8434111 (+)
kcnj14 kcnj14,LOC107749008,LOC107685531,LOC107596661,LOC107550821 coding downstream 179246 8487225 ~ 8502327 (+)
myh14 myh14,LOC107748966,LOC107685529,LOC107596662 coding downstream 198274 8506253 ~ 8540246 (+)
G110551 NA non-coding upstream 5135 8296026 ~ 8296909 (+)
G110483 NA non-coding upstream 233010 8068831 ~ 8069034 (+)
LOC122360232 NA non-coding upstream 269988 8027303 ~ 8032056 (+)
G110468 NA non-coding upstream 315880 7985913 ~ 7986164 (+)
G110336 NA non-coding upstream 825573 7396328 ~ 7476471 (+)
G110559 NA non-coding downstream 12377 8320356 ~ 8320688 (+)
G110560 NA non-coding downstream 12771 8320750 ~ 8321175 (+)
G110561 NA non-coding downstream 30472 8338451 ~ 8339085 (+)
G110571 NA non-coding downstream 118536 8426515 ~ 8426968 (+)
G110638 gapdh,LOC107550818 non-coding downstream 258410 8566389 ~ 8630071 (+)
G110458 NA other upstream 322082 7907813 ~ 7979962 (+)
egfra LOC107708546,LOC107681784,LOC107747514,LOC107691124,LOC107566457 other upstream 397428 7852851 ~ 7904616 (+)
LOC122359938 angpt1,LOC107654726,LOC107706239,LOC107696520,LOC107754267 other upstream 540459 7736415 ~ 7761585 (+)
G110364 cdkal1,LOC107722243,LOC107732137 other upstream 574607 7639982 ~ 7727437 (+)
G110172 NA other upstream 2022589 6268908 ~ 6279455 (+)
G110713 LOC107685602 other downstream 500728 8808707 ~ 8816836 (+)
tmem238a tmem238,LOC107685601 other downstream 512577 8820556 ~ 8830703 (+)
vamp1b zgc:92912,LOC107596691,LOC107656704,LOC107741978,LOC103044039,LOC105912972,LOC108268517,LOC108429010 other downstream 626072 8934051 ~ 8940612 (+)
LOC122360022 cpq,pgcp other downstream 884101 9192080 ~ 9231883 (+)
ctnnb1 ctnnb1,LOC107570993,LOC107701997,LOC107751892,LOC107748497 other downstream 1048453 9356432 ~ 9387391 (+)

Expression


Co-expression Network