mettl25b (rrnad1,LOC107689858,LOC107549245,LOC107587879)


Basic Information

Item Value
gene id mettl25b
gene name rrnad1,LOC107689858,LOC107549245,LOC107587879
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 17732604 ~ 17737482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168044
GACGgctgcattttaatgttatctTCTGTTTTGTCCCAGGTATGCTCGTTTGGCACTGCCACGGGTGGGCCTACCTTCTGATCTCGCACTTGACCCTGCTGCTGTTGATGAAATGCTAGCGCACCAGGGTAAAGTGGTGGCATACTTCAGCCTGGTTCTTCTCCTCGCACCTGTGGTGGAAACTCTAGTGTTACTGGACAGAATGATTTTCCTGCAAGAGAGAGgtTTCCAGAGTAACATCATCCCACTTTTTGATGCTGCTTTTTCCCCACGAAACCTGGTACTGGTGGCCGTCAAGCCCAAAGAAGCACAGAGCTGAACGAAATAACACACACCAAGATATTTGAATCCAAGTTCTGAATCACAACCACGTAATTAGATTAACAGtaacaatttataaataaaatcccCTGAATGAACCGTCACACAAACCATCTGACATTTGAAAACTGAAATTAGAGGTCtgattttccattttccataGTGACCCATTAATAGCTCATTGTCAatcatttattcctgttatgctTTTCTTCACTTATAAGCAAAAACTGTCTGAGATTTTGTCTGAATTGga
>XM_043260332.1
GCCTGTGAACACGTGTGGTCGGGCTGCTGCATGTAAACACCACAGTCTTAATACGTTTCcaattaagtttttatattaaataaatgctcgGATTATTGAAGGACACCTAGTTTAACCTGCGTGGTGCTTTTAGTGCTGCAGAAATGTTTGTGGCGGCTTTTTCAGAGCAGGAGCAGAGAGACTTAGCTGAGAAGCTGACTTCGCTGCTGTCAACCTACAGACACATATCAGACTCCTACATAATAGAGTTCTTCAGTGAGAGTTTGTGGGACACTCTGCCTGTGAGCTGGCAGGACGCCCTCGGTGATCTTACACCACCACAGATCGCTGATCTGCTGCTGGATAAAGAGATTAAGGACAGGCGGTACCCATCTGTGTGGCCTCTGTCCTTGCTGGCACTGCGGACGGCAGCACATTCGCTGTCGTTTCCACGTAAAGCACCAGGCGGGCACAGCCAGGACACAGGTGCAGCAGGGCCAGAGGAGTTTCAGTCGAACCAGAGTCAGAGTTCTTTGTTAGGACACATATTCCGTAAGCACGTCAAGCCCAAGAAGCAGCACGAAATCCGCTGACTAGGCACGCTGGTCAAGAAATTATGTGATCAGGCTAACTGTAGCTGTGTGGTTGACGTTGGGTCTGGACAGGGCCATTTGACGAGGTTTCTGTCTTTTGGACTTGGTCTGGATGTCACTGGAATTGAGGCTGACCCTAACCTTGTTTCCATGGCTACCAAATTTGATAGACAGCTTGTACTGACACTCACTAAAGATATTCAGAagTCAGGAAATTCTCAAAGTCTTTATTCTGCACCTGGTCCTCCTCCTCGTCATGTGGTGGGCTGGGTCAACCCAAAAGCTTCGTGGGATGTCTTCATTCAGCAGCTTGGTCTGACAGCAACTGAAAATGACAGTATTGGAGCAACCACTGGCCCATATGAAAAGAAACAGCGGGTGGAGGAGCTGAATCTAGAGCCGCATTCATGCCAAATCAAAGCACAAGATTTACAAAATATACTGCTGACTCAAAAAACTGACGTCAATGCTTCAGACTCTGTAGCACAAATAAACACTGGGCTTTTTCCATCAGGGATGGCCACCGAAATGCTTACCTGTAAAACTGTACCAGTTGCTGCTTGTGATGCCGAAAAACTTGGCTGTTTTGTCCTCACCGGACTTCATGCTTGTGGAGACCTTAGTTCTACACTTCTACGTCATTTTGTCAATTGCCCTCGCGTTCAGGTCATCACATCAGTCGCTTGCTGCTACATGAAAATCTCAACCAAGGAAAACCCAAACCCTCCAGGCGTTTTCCAGCCCCCATTTTCTGCAGACAGAGTGGTGGATTCCTGTTCAGAATATGGTTATCCGATGAGCGACTGGGTCTGTGGATTACCAGCGCACCAGTTGTCGTATAAGGCACGAGAGGGAGCGTGTCATGCAATAGAGGACTATCTCCACCGATTGAGAGAGGAGAGTGGCTTACTGAGGACACACTGCTATAGAGCCATCTTAGAAAGCATCATCAGAGCGGAGAGGCCCGATATGCGCAGACCGGGAGTTCAGACTGTTAGGAAAGCCCACGCACTGTCATTTTCTGAGTATGCTCGTTTGGCACTGCCACGGGTGGGCCTACCTTCTGATCTCGCACTTGACCCTGCTGCTGTTGATGAAATGCTAGCGCACCAGGGTAAAGTGGTGGCATACTTCAGCCTGGTTCTTCTCCTCGCACCTGTGGTGGAAACTCTAGTGTTACTGGACAGAATGATTTTCCTGCAAGAGAGAGgtTTCCAGAGTAACATCATCCCACTTTTTGATGCTGCTTTTTCCCCACGAAACCTGGTACTGGTGGCCGTCAAGCCCAAAGAAGCACAGAGCTGAACGAAATAACACACACCAAGATATTTGAATCCAAGTTCTGAATCACAACCACGTAATTAGATTAACAGtaacaatttataaataaaatcccCTGAATGAACCGTCACACAAACCATCTGACATTTGAAAACTGAAATTAGAGGTCtgattttccattttccataGTGACCCATTAATAGCTCATTGTCAatcatttattcctgttatgctTTTCTTCACTTATAAGCAAAAACTGTCTGAGATTTTGTCTGAATTGgagagaatttttaaaaatatttttaactttgttATAAAGACAAACTAGTTTGTGCTTTTTTCATAGTTGTCAGACTGGATTTATTGCATAAACTTTTCTCTTAAGGAACAGGATTTATATTTCACTGGCCAAAGTTGCTATCATCTATGGctcatatttattacaaaagacATTCAGACCCGGGA

Function

symbol description
rrnad1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human METTL25B (methyltransferase like 25B).

NR:

description
PREDICTED: protein RRNAD1-like

GO:

id name namespace
GO:0000154 rRNA modification biological_process
GO:0032259 methylation biological_process
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168044 False 577 lncRNA 0.42 2 17736432 17737299
XM_043260332.1 True 2318 mRNA 0.46 8 17732604 17737482

Neighbor

gene id symbol gene type direction distance location
hapln2 hapln2,LOC107663449,LOC107717805 coding upstream 22685 17706602 ~ 17709919 (+)
nes LOC107689863,LOC107549237,LOC107741763,LOC107717781,LOC107597975,LOC107663107 coding upstream 145060 17581031 ~ 17587544 (+)
gpatch4 gpatch4,LOC107668491 coding upstream 155678 17573494 ~ 17576926 (+)
gon4lb LOC107741764,LOC107549236,LOC107689862,LOC107668496,LOC107717780,LOC107597969 coding upstream 159220 17558607 ~ 17573384 (+)
npr1b npr1b,LOC107741766,LOC107689868,LOC107717786,LOC107681586,LOC103022666,LOC108436575,LOC106605459,LOC106580330 coding upstream 176790 17526069 ~ 17555814 (+)
ctsk ctsk,LOC107689854,LOC107587836,LOC107741754,LOC107717769,LOC107663458 coding downstream 43915 17781397 ~ 17785320 (+)
ctss2.1 LOC107689850,LOC107663319,LOC107663331,LOC107587832,LOC107597985,LOC107741752,LOC107597987 coding downstream 49946 17787428 ~ 17790894 (+)
LOC122359890 LOC107689850,LOC107663331,LOC107587832,LOC107597985,LOC107741752,LOC107597987,LOC107663319,LOC107587833 coding downstream 53874 17791356 ~ 17798673 (+)
LOC122359893 LOC107663319,LOC107587833,LOC107741753,LOC107689852,LOC107597987,LOC107597985,LOC107689850 coding downstream 64295 17801777 ~ 17805660 (+)
mcl1b LOC107587828,LOC107741748,LOC107689846,LOC107732475,LOC107597989,LOC107663357 coding downstream 110502 17847984 ~ 17850434 (+)
G113790 NA non-coding upstream 27855 17687840 ~ 17704749 (+)
G113795 NA non-coding upstream 37790 17692771 ~ 17694814 (+)
LOC122361056 NA non-coding upstream 62431 17656614 ~ 17670173 (+)
G113678 syt11b,LOC107689871,LOC107741769,LOC107549234,LOC107597967,LOC107681579 non-coding upstream 234902 17457213 ~ 17497702 (+)
G113691 NA non-coding upstream 306445 17425337 ~ 17426159 (+)
G113850 NA non-coding downstream 15278 17752760 ~ 17753788 (+)
G113851 NA non-coding downstream 16772 17754254 ~ 17771924 (+)
G113882 NA non-coding downstream 153745 17891227 ~ 17891719 (+)
LOC122359994 NA non-coding downstream 155488 17892970 ~ 17933477 (+)
G113942 LOC107587908,LOC100536175,LOC103025787 non-coding downstream 396404 18133886 ~ 18136989 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 325408 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 820723 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 908621 16767060 ~ 16823983 (+)
cblc cblc,LOC107699489,LOC107595708,LOC107714982,LOC107593659,LOC107723469,LOC107657700 other upstream 1420232 16302542 ~ 16312372 (+)
hcst NA other upstream 1808807 15920075 ~ 15923797 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other downstream 104320 17841802 ~ 17847410 (+)
G114131 NA other downstream 911063 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 938078 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 1020823 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 1071262 18808744 ~ 18821136 (+)

Expression


Co-expression Network