fxyd11


Basic Information

Item Value
gene id fxyd11
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19280383 ~ 19283515 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168828
ACAGAAAGGTTGTGAGATCAGCCCACCTGAGGAGCCTCATCCAACATCTACTGCTCAGAGAGCCATCAGTTCCTCTGCTAAGGAGAGGTAAAAATGAGCCAGCTCACAGAACTAGTTCTTCTTACAGTCTTCTTGGCATTCTTCGGTCAAGCTGAAGCAAATCCTTTCGTTTACAACTATGAGGCGCTGAGGATCGGGGGTTTGATCTTCACAGCCCTGCTCGTAGCCGGAGGGGTTGGAGTTCTGTGTTGGGGGCAGTGCAAACCACGGAGAAAGAATGATGAAGACGCAAGCAAAATCTAAGGATTTCAGACTTCATCTGCTGAAAATTTCCATTGGATTTGATCGAGCGGAAGactgttgggtttttttctagAAAGCGCTAATGGCGAACTTGCTTCACTTCTCAcctgtactttattttattgttgattctttcaatatttttcaaccatttaatttatgcattaattACAGTCCCTTCCCAAAAAACTGagctgctgttattttgaatttatagaATTACTCTATAAATGTTGATAATCTCTCAAAGTGgcgttttaataaaaattctcAGTCATGGGCCTGCAAAACTGATTTGGTTGTCATTTTATGTCTAAATGAATTTTTTGGATGAGAGATATTCAAACATTGGCTGGCCTTGATGgaagttaaatgtatttattttattttatttattttttttgtaaaaatctaaGTACAATGAAATACTGAAATGCATTATACACAGCATGCATTAAACAtagatggaaataaataaaataaataaatgtggttattcatatatttatttgacctGTTTCTCAATGATAATGTCcaggcaaaaaaaattaatgaaaataaaatacaaaatactttt
>XM_043261073.1
GAGGAGTTTTCTTTAAAGGTTATAGAAAAGACAGAAAGGTTGTGAGATCAGCCCACCTGAGGAGCCTCATCCAACATCTACTGCTCAGAGAGCCATCAGTTCCTCTGCTAAGGAGAGGTAAAAATGAGCCAGCTCACAGAACTAGTTCTTCTTACAGTCTTCTTGGCATTCTTCGGTCAAGCTGAAGCAAATCCTTTCGTTTACAACTATGAGGCGCTGAGGATCGGGGGTTTGATCTTCACAGCCCTGCTCGTAGCCGGAGGGGTTGGAGTTCTGTGTTGGGGGCAGTGCAAACCACGGAGAAAGAATGATGAAGACGCAAGCAAAATCTAAGGATTTCAGACTTCATCTGCTGAAAATTTCCATTGGATTTGATCGAGCGGAAGactgttgggtttttttctagAAAGCGCTAATGGCGAACTTGCTTCACTTCTCAcctgtactttattttattgttgattctttcaatatttttcaaccatttaatttatgcattaattACAGTCCCTTCCCAAAAAACTGagctgctgttattttgaatttatagaATTACTCTATAAATGTTGATAATCTCTCAAAGTGgcgttttaataaaaattctcAGTCATGGGCCTGCAAAACTGATTTGGTTGTCATTTTATGTCTAAATGAATTTTTTGGATGAGAGATATTCAAACATTGGCTGGCCTTGATGgaagttaaatgtatttattttattttatttattttttttgtaaaaatctaaGTACAATGAAATACTGAAATGCATTATACACAGCATGCATTAAACAtagatggaaataaataaaataaataaatgtggttattcata

Function

GO:

id name namespace
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168828 True 880 lncRNA 0.36 7 19280413 19283515
XM_043261073.1 False 835 mRNA 0.37 7 19280383 19283440

Neighbor

gene id symbol gene type direction distance location
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 7112 19262614 ~ 19273271 (+)
si:dkey-33i11.1 si:dkey-33i11.1,LOC107666767,LOC107726681,LOC107728459 coding upstream 20780 19251356 ~ 19259603 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding upstream 39744 19214486 ~ 19240639 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding upstream 227767 19029066 ~ 19052616 (+)
LOC122360019 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 coding upstream 267144 19002551 ~ 19013239 (+)
LOC122360453 NA coding downstream 9512 19293027 ~ 19296789 (+)
LOC122360927 LOC107666765,LOC107728460 coding downstream 21994 19305509 ~ 19307500 (+)
LOC122360047 LOC107666749,LOC107686570 coding downstream 25857 19309372 ~ 19311747 (+)
LOC122360969 NA coding downstream 39516 19323031 ~ 19325543 (+)
LOC122360278 LOC107728464,LOC107666853,LOC107728467,LOC107666779,LOC107686805,LOC107592514,LOC107728451,LOC107666749 coding downstream 58824 19342339 ~ 19348454 (+)
G114345 NA non-coding upstream 32063 19245933 ~ 19248320 (+)
G114354 NA non-coding upstream 74419 19202394 ~ 19205964 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding upstream 124316 19095730 ~ 19156067 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding upstream 167656 19068602 ~ 19112727 (+)
G114299 NA non-coding upstream 300511 18977551 ~ 18979872 (+)
G114379 NA non-coding downstream 24749 19308264 ~ 19309214 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding downstream 364389 19647904 ~ 19648864 (+)
G114556 NA non-coding downstream 395868 19679383 ~ 19679686 (+)
G114558 NA non-coding downstream 398625 19682140 ~ 19682452 (+)
LOC122360931 NA non-coding downstream 419210 19702725 ~ 19719929 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 27337 19197804 ~ 19253046 (+)
G114131 NA other upstream 422953 18648545 ~ 18857430 (+)
LOC122360132 NA other upstream 438799 18827254 ~ 18841584 (+)
LOC122360692 NA other upstream 459247 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 518612 18758305 ~ 18761771 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other downstream 246 19283761 ~ 19292881 (+)
G114382 NA other downstream 43589 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 360314 19643829 ~ 19647806 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 936129 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 984026 20267541 ~ 20304684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138554 NA non-coding CI01000027 null 1886234 ~ 1889683 (+)