fxyd3 (fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849)


Basic Information

Item Value
gene id fxyd3
gene name fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19283761 ~ 19292881 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU168830
ACTCAGGACTGAGCCAACCTGTTGAGCGGATGGTGTAGGGTGTTGGTTTCAGTCTGTCTAGATCAGATCTTTACGGGTGGTTCCTTCACAACCACGTTTCAAACCTCAACATTTCACTTTCTTTCTCCTTGAAAAGGGTTAAATCCACACTGTCATGATGAAGACTTTGGCACTAGTTTTCTTGACACttttgtcCCTTGTGTTGGCAGAAGGTCAGCAGACAACAGAGGAAGACCCCTTCTCTTTTGATTATCACAGACTTCGGGTTGGAGGTCTGATCTTGGCAGCAGTTCTGTGTCTGATTGGCATCACTATTCTTCTAAGTGGACACTGCAGATGCAAATTCAACCAAGACAAGAGGAGGAGGACAGGAAGCAACGCTCAAGCGATGCTCAACGATACAGCAAGGGCCAGCGAATGCTAAATACCTGCTGGCCTGACCTGAACCAATCAGAGGAGACGGTCCGTCTTTATGTGCTGGTTTATCAGAGGAACCGTTTCTCTTTTAAGACGAGGAACCTGATACGaaggttttctgtgttttcactgCCTATCTGCTCCAGAGGAGGAAGCTGAAAATCCATATACCGTTTTTTTATATGCCAGACGTGTCTTTTTgatatcatttaatataaatcgattaccaaaaatctttttttttccctcctgtcagtaattgtattaaattatgttGGATGTAGGTGCGCAAGGGAAGGCTTTCGATGGAAGTGTGCTGAATCGTATGAAAACCTGTAACCAAAAATGACTAGCTCTAGCTGTTCCGCGCAATATTACGCTGTTGCATTCTGTGTGAAGTAGTTTACCGTTCAGGCTTGCTTGGCTAGTTAAAAAAAGACACGAAAAGATTACGCTATCATATTTACGTCGCGATGTCGTCATGTGCTTGATCCGTTTTCATTCGCAGCCCGTGCGTCACGGGATTGCTGGTAGtattaagagtttatttttatctgtCGTGTGAAAAATGTCAGAATCGGTCGAACATACACTAAAATAAACTGAGAGACACTAAACA
>XM_043261071.1
CATTCAAAACTCAACCCACTCAGGACTGAGCCAACCTGTTGAGCGGATGGTGTAGGGTGTTGGTTTCAGTCTGTCTAGATCAGATCTTTACGGGTGGTTCCTTCACAACCACGTTTCAAACCTCAACATTTCACTTTCTTTCTCCTTGAAAAGGGTTAAATCCACACTGTCATGATGAAGACTTTGGCACTAGTTTTCTTGACACttttgtcCCTTGTGTTGGCAGAAGGTCAGCAGACAACAGAGGAAGACCCCTTCTCTTTTGATTATCACAGACTTCGGGTTGGAGGTCTGATCTTGGCAGCAGTTCTGTGTCTGATTGGCATCACTATTCTTCTAAGTGGACACTGCAGATGCAAATTCAACCAAGACAAGAGGAGGAGGACAGGAAGCAACGCTCAAGCGATGCTCAACGATACAGCAAGGGCCAGCGAATGCTAAATACCTGCTGGCCTGACCTGAACCAATCAGAGGAGACGGTCCGTCTTTATGTGCTGGTTTATCAGAGGAACCGTTTCTCTTTTAAGACGAGGAACCTGATACGaaggttttctgtgttttcactgCCTATCTGCTCCAGAGGAGGAAGCTGAAAATCCATATACCGTTTTTTTATATGCCAGACGTGTCTTTTTgatatcatttaatataaatcgattaccaaaaatctttttttttccctcctgtcagtaattgtattaaattatgttGGATGTAGGTGCGCAAGGGAAGGCTTTCGATGGAAGTGTGCTGAATCGTATGAAAACCTGTAACCAAAAATGACTAGCTCTAGCTGTTCCGCGCAATATTACGCTGTTGCATTCTGTGTGAAGTAGTTTACCGTTCAGGCTTGCTTGGCTAGTTAAAAAAAGACACGAAAAGATTACGCTATCATATTTACGTCGCGATGTCGTCATGTGCTTGATCCGTTTTCATTCGCAGCCCGTGCGTCACGGGATTGCTGGTAGtattaagagtttatttttatctgtCGTGTGAAAAATGTCAGAATCGGTCGAACATACACTAAAATAAACTGAGAGACACTAAA

Function

symbol description
fxyd1 Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in negative regulation of protein glutathionylation; regulation of cardiac muscle cell membrane potential; and regulation of sodium ion transmembrane transport. Predicted to be located in several cellular components, including T-tubule; caveola; and intercalated disc. Predicted to be part of sodium:potassium-exchanging ATPase complex.
plm FXYD domain-containing ion transport regulator 1

NR:

description
PREDICTED: phospholemman-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168830 False 1036 lncRNA 0.43 8 19283778 19292881
XM_043261071.1 True 1051 mRNA 0.43 8 19283761 19292879

Neighbor

gene id symbol gene type direction distance location
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 10490 19262614 ~ 19273271 (+)
si:dkey-33i11.1 si:dkey-33i11.1,LOC107666767,LOC107726681,LOC107728459 coding upstream 24158 19251356 ~ 19259603 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding upstream 43122 19214486 ~ 19240639 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding upstream 231145 19029066 ~ 19052616 (+)
LOC122360019 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 coding upstream 270522 19002551 ~ 19013239 (+)
LOC122360453 NA coding downstream 146 19293027 ~ 19296789 (+)
LOC122360927 LOC107666765,LOC107728460 coding downstream 12628 19305509 ~ 19307500 (+)
LOC122360047 LOC107666749,LOC107686570 coding downstream 16491 19309372 ~ 19311747 (+)
LOC122360969 NA coding downstream 30150 19323031 ~ 19325543 (+)
LOC122360278 LOC107728464,LOC107666853,LOC107728467,LOC107666779,LOC107686805,LOC107592514,LOC107728451,LOC107666749 coding downstream 49458 19342339 ~ 19348454 (+)
G114345 NA non-coding upstream 35441 19245933 ~ 19248320 (+)
G114354 NA non-coding upstream 77797 19202394 ~ 19205964 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding upstream 127694 19095730 ~ 19156067 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding upstream 171034 19068602 ~ 19112727 (+)
G114299 NA non-coding upstream 303889 18977551 ~ 18979872 (+)
G114379 NA non-coding downstream 15383 19308264 ~ 19309214 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding downstream 355023 19647904 ~ 19648864 (+)
G114556 NA non-coding downstream 386502 19679383 ~ 19679686 (+)
G114558 NA non-coding downstream 389259 19682140 ~ 19682452 (+)
LOC122360931 NA non-coding downstream 409844 19702725 ~ 19719929 (+)
fxyd11 NA other upstream 246 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 30715 19197804 ~ 19253046 (+)
LOC122360132 NA other upstream 442177 18827254 ~ 18841584 (+)
LOC122360692 NA other upstream 462625 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 521990 18758305 ~ 18761771 (+)
G114382 NA other downstream 34223 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 350948 19643829 ~ 19647806 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 926763 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 974660 20267541 ~ 20304684 (+)
siglec15l NA other downstream 1474397 20767278 ~ 20770392 (+)

Expression


Co-expression Network