LOC122360615 (scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836)


Basic Information

Item Value
gene id LOC122360615
gene name scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21129128 ~ 21132105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU169784
AATTTGGTctgatatacacacatataaatttaatttttcttttttttaaacaattatttatttagcttttcaAAATATAGAGATGTTGTTGTTTATCTTAAAGAcagttattttaacaatattttaatttactgatTAGTCTAGTTTTTAAGCCTAATATGCatataactttgcatttttattttagaagcgTCAAAACAGTAAAAGACAGTACTTAGTACCGAATGGTCTGCTGCTTGTAATCAAACACTGGGAAAAGAAAACTAAGTGCACATATTTTAATAGTGCTGATAATTGCATCATCTCTGACCTTGAGCAATACGCAGCTTGACTTCAAGATCGACAGGCGTTGACACAACAGACTTGGTGAGGACAAGGACATTCTCCAAACCAATTACCACCACAAGAGTGGCTGAAGTATGAAGGCCTTTGGGTTCATGTTGGTGGATCGTCTTCAGGAGGTCTGGATCTGCATCAAACAAGTCACGTCGGTTCTGCCAATAGTTGCCAGGGGATACCAGCAGGCAGCCGTGCTCTGGAAGGACCGCCTGCATGCGCCGCAACCCTGGCAACAGGTCTGTTACCTGCAAGCACAGAGCCTCCAAACTTCTGAGAGGAGAGAAGTGAAGAAAACAGGATAGAATGAGGAGACTGAAAACGCGCCCAAGGGGAGAACGGAAAACGTCTACAGGAACCAGACTGTTGTCCCATGGTGAAACTGCTGCCTTGACCAGAACCTGCTGGATGTAGGCCACTGGAGGACCCCGATACTGCAAGACAGGC
>XR_006252821.1
GTTATTTACAAGAGCTTAACCTGAATTGCTGGTACAAATGTGAAGTATCCAATGAGGATGATACACAGCTCAGTTGCCATATTCTTCATGATGGACCAGCTTTCATTGCTTAAACCTTAAGACAGAACCAACCAGAaagcgTCAAAACAGTAAAAGACAGTACTTAGTACCGAATGGTCTGCTGCTTGTAATCAAACACTGGGAAAAGAAAACTAAGTGCACATATTTTAATAGTGCTGATAATTGCATCATCTCTGACCTTGAGCAATACGCAGCTTGACTTCAAGATCGACAGGCGTTGACACAACAGACTTGGTGAGGACAAGGACATTCTCCAAACCAATTACCACCACAAGAGTGGCTGAAGTATGAAGGCCTTTGGGTTCATGTTGGTGGATCGTCTTCAGGAGGTCTGGATCTGCATCAAACAAGTCACGTCGGTTCTGCCAATAGTTGCCAGGGGATACCAGCAGGCAGCCGTGCTCTGGAAGGACCGCCTGCATGCGCCGCAACCCTGGCAACAGGTCTGTTACCTGCAAGCACAGAGCCTCCAAACTTCTGAGAGGAGAGAAGTGAAGAAAACAGGATAGAATGAGGAGACTGAAAACGCGCCCAAGGGGAGAACGGAAAACGTCTACAGGAACCAGACTGTTGTCCCATGGTGAAACTGCTGCCTTGACCAGAACCTGCTGGATGTAGGCCACTGGAGGACCCCGATACTGCAAGACAGGCGGC

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

NR:

description
PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169784 True 783 lncRNA 0.42 3 21129277 21132102
XR_006252821.1 False 735 lncRNA 0.48 4 21129128 21132105

Neighbor

gene id symbol gene type direction distance location
ptpn23a ptpn23a,ptpn23,LOC107666802,LOC107717372,LOC107668297 coding upstream 11438 21107087 ~ 21117690 (+)
cmtm6 LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799 coding upstream 344687 20778080 ~ 20784441 (+)
cmtm7 cmtm7,LOC107666776,LOC107717357,LOC107668286,LOC107600545,LOC107592881,LOC107713818 coding upstream 354750 20770464 ~ 20774378 (+)
LOC122361050 LOC107717367,LOC107666876 coding upstream 364781 20759368 ~ 20764347 (+)
rpp25l rpp25l,LOC107666877,LOC107600503,LOC107717368,LOC107713839,LOC107592013,LOC107668321 coding upstream 369896 20756995 ~ 20759232 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107717377,LOC107666889,LOC107668317,LOC107713815 coding downstream 15652 21147757 ~ 21157049 (+)
si:dkey-22o22.2 si:dkey-22o22.2,LOC107666790,LOC107717379,LOC107668308,LOC107592533,LOC107713796,LOC107600533,LOC108437325,LOC108272818 coding downstream 78747 21210852 ~ 21314454 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding downstream 214552 21346657 ~ 21354616 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding downstream 233234 21365339 ~ 21378842 (+)
LOC122360960 NA coding downstream 260737 21392842 ~ 21405824 (+)
G114978 NA non-coding upstream 8596 21118149 ~ 21120532 (+)
LOC122360417 NA non-coding upstream 199687 20928702 ~ 20929441 (+)
G114826 NA non-coding upstream 490488 20637446 ~ 20638640 (+)
G114813 NA non-coding upstream 542301 20586060 ~ 20586827 (+)
LOC122360972 NA non-coding upstream 706939 20414210 ~ 20422189 (+)
trnae-cuc_37 NA non-coding downstream 6776 21138881 ~ 21138952 (+)
G114983 NA non-coding downstream 8937 21141042 ~ 21142030 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding downstream 35889 21167994 ~ 21169353 (+)
G115074 NA non-coding downstream 258676 21390781 ~ 21391162 (+)
G115134 NA non-coding downstream 561389 21693494 ~ 21694544 (+)
siglec15l NA other upstream 358736 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 824444 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 902051 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1481322 19643829 ~ 19647806 (+)
G114382 NA other upstream 1800365 19327104 ~ 19328763 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 717884 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 751804 21883909 ~ 21921531 (+)
G115193 NA other downstream 845012 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 1777430 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 1832464 22964569 ~ 22975774 (+)

Expression


Co-expression Network