stt3b (stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794)


Basic Information

Item Value
gene id stt3b
gene name stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21883909 ~ 21921531 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170042
GTGGGTCTCGTGTGCCGAGTGGTACAAGCCGGTTAGCATGCCACTCAGACGCGGAATCTACTGCAAATAAATCCAGATTGTTCACACACAACGCCGAATACCTGCAGTTGGAGCGAAGGCCTGGTTGCGCAGAAATATTGGCGCCGAGGAGGGAGCGGGTTGGTGGAAAGAGGGGTGCGTGGCGGTGGGAAGTGCTCTTCTAACCAAATCCTCCAGAACATGGCGGAGCACCACACCGCCTCCGACTGCAAGCACAAAGCCAGCTCCAACGCCGGAGGTTCGGTCTCGGGCAACGGACGGCCCAACTCCCCGGCTGGATGCGGCGGCAGCGGAGGAGGCCTGTCCGGGGGACTGACGCAGCCGGCGGGATGGCAGTCTTTGCTGTCGTTCACTATTCTCTTTCTGGCCTGGTTGGCAGGGTTCAGCTCGCGACTTTTCGCTGTTATTCGCTTCGAGAGCATCATTCACGAGTTCGACCCTTGaGTTCGGGTCAGCAGCGGATCCATTGATGCAAAAGGATATACTTGAATTGCTAAATTTCAAAGTCTACATTCTCATTTGATGTATTCAGAGCAGCTCATGTGCTTGCTTTTACTTGCAGATTGTGTctaactgatttatttaaaaatgtatcacctaaatgtattttagatttGTACGTCGTATAACCTTTTGTTAATTGTGTACCTTGTATGATTTATTCAGAGTTCACCATGCTGGCatggcattaaaaataaaaatacaattacttGCAGGTTAATTTGGTAACACTAACagttgcaatattttaataaaattattggtACATTTTATAATTGGTATTAATACAAGCTGATAGCTAATATAGTTGAAacctaaagtgttaccatgaaTTTTTATCATACGCCAATCATTATTACTGACATGGTCTCATTTTcactaacattttaaaacaccagCAAGTCCAGATAATTAATTCAGATTGATTAACATCTCAAGCAAATGTGatgtattgttgttttttttaaaggtcagagtttatttacattcatagcaaataaaatgtgttacaaTCAATTTACGCAAAtgacatttgtaaataattatatttcagctGGACAGGAAAATAAAGTGGCTGGAGTGAGCTGTGCAGCGTGACCAAAATTGAAATGCAGTATCCCCGAATTTCAAGTTTAAATGCCTTCATTGATTGCAATGCGAACGATCTAGTCTTGTTCAAGCCAGTCAAGCCAAAAATGAGCCGTTGTGGTCCTTTGGTTCTTGGTTTGAGACCAGCAGTTAAAGAGGTTTGGTGCAGAGCCATGTATTTTGGCCCACAACCTCATTCTCTTTGTTGGAAACTAGGTGTGCGTAAATGATAGACACAAATAGAAATATTCTTTCACCGGCATCTGTTTATACCACGTTTAATTGTGCTTGcttatttctttctatttataTTACTTGTCGTTGTCTAATGGTCAATTGGTTATTCTATAAAAAACACTAATgttcattgttgttgttattattaccaAATCTCCAAATACAAATCAAATCTGTACATTATAATTCACTTGTAGCTTTTACAGCAATTGACTTCAGAATAGATTTTAGTAttccattgtttttattttgacaacaCAATagagaatttacatttttataaagagcctacataaaaacaattaccAACTTATTAAATTGGCCTGAATGCAATGtcagtgcacaaaaaaaaattatcctttTGAAATGGAAGAGAATTTACAGTCAGTTTCTTCTGAAATTAAAGACATTTGGATTCTCATCCTTGTCTTTTACGGGGTTGAGTATTCTGCAAAGCACCAGCACTCACTTTTACTCCCTGACATATTTAATGCACACGGAGACAGCGCATCTCATTTTATAAACCATAACTCTTTTCCATATATTATTCAGCCATCAGACCTCTTTCTGCTG
>XM_043261107.1
CCTATTTCCCCCCTCCTACAGTGGGTCTCGTGTGCCGAGTGGTACAAGCCGGTTAGCATGCCACTCAGACGCGGAATCTACTGCAAATAAATCCAGATTGTTCACACACAACGCCGAATACCTGCAGTTGGAGCGAAGGCCTGGTTGCGCAGAAATATTGGCGCCGAGGAGGGAGCGGGTTGGTGGAAAGAGGGGTGCGTGGCGGTGGGAAGTGCTCTTCTAACCAAATCCTCCAGAACATGGCGGAGCACCACACCGCCTCCGACTGCAAGCACAAAGCCAGCTCCAACGCCGGAGGTTCGGTCTCGGGCAACGGACGGCCCAACTCCCCGGCTGGATGCGGCGGCAGCGGAGGAGGCCTGTCCGGGGGACTGACGCAGCCGGCGGGATGGCAGTCTTTGCTGTCGTTCACTATTCTCTTTCTGGCCTGGTTGGCAGGGTTCAGCTCGCGACTTTTCGCTGTTATTCGCTTCGAGAGCATCATTCACGAGTTCGACCCTTGGTTCAACTACAGATCAACTCATCATCTAACAACTAATGGCTTTTACGAGTTTCTCAACTGGTTTGATGAGAGGGCCTGGTACCCATTGGGCAGAATAGTGGGAGGGACGGTGTATCCTGGTCTGATGGTGACGGCGGGCCTGATCCACTACATACTGAATCTGCTTCATGTGACAGTTCACATACGTGATGTCTGCGTGTTTCTGGCCCCCGTTTTCAGCGGCCTGACCGCCATTTCTACCTTCCTGTTAACCCGGGAGCTGTGGAACCAGGGTGCCGGTCTACTGGCTGCGTGTTTCATCGCCATCGTACCAGGCTACATATCCCGCTCTGTAGCTGGCTCGTTTGACAACGAGGGCATCGCCATTTTTGCCTTGCAGTTTACCTACTACCTATGGGTGAAATCAGTGAAAACTGGCTCGGTCTTCTGGACCATCGGCTGCTGCCTTTCATACTTTTACATGGTGTCTGCATGGGGAGGATACGTCTTCATCATCAACCTGATTCCTCTCCATGTTTTCGTGCTTCTCCTTATGCAGCGCTTCAGCAGGAGGCTGTACATCGCCTACAGCACTTTTTATATAGTGGGGTTGGTGCTATCCATGCAGATCCCATTCGTTGGCTTCCAGCCCATCAGGACGAGCGAGCACATGGCTGCTGCAGgtgtATTTGCTCTGCTTCAGGCTTACGCCTTTCTGCAGTATCTGAAGGACAGATTGACCAGACAGGAGTTCCAGACATTGTTCTTTCTGGGCGTTTCTCTGGCAGCGGGGGTGGTTTTCCTTACTGTCATTTACCTGACTTACACAGGGTACATTGCTCCTTGGAGTGGGCGTTTTTACTCTCTCTGGGACACAGGATACGCAAAGATCCACATCCCCATCATTGCATCTGTGTCAGAGCACCAGCCCACCACCTGGGTCTCCTTCTTCTTTGACCTGCACATCCTCGTCTGCACCTTCCCCGCAGGCCTCTGGTTCTGCATCAAGAACATCAACGACGAGCGAGTGTTTGTGGCTCTGTACGCCATCAGCGCGGTGTACTTTGCCGGTGTGATGGTGCGTTTGATGCTGACTCTCACCCCGGTGGTGTGCATGCTCTCAGCCATCGCCTTCTCCAGTGTGTTTGAGCACTACCTGGGTGATGACATGAAGCGTGAAAACCCGCCGGCTGAGGACAGCAGTGATGAGGATGACAAGAGGAATCAGGGGAACCTCTATGATAAGGCCGGCAAAGTCCGAAAGCATGTTTCGGAGCAGGACCGCCCAGAGGAGGGTTTGGGCCCCAACATCAAAAGCATAGTTACCATGTTAATGCTGATGCTCTTGATGATGTTTGCTGTGCACTGCACGTGGGTCACCAGCAATGCTTACTCCAGTCCCAGTGTAGTGTTGGCGTCATACAACCACGATGGATCACGCAACATTCTGGATGATTTCCGTGAAGCGTATTACTGGCTCAGGCAGAATACCGATGAACACGCTCGAGTCATGTCCTGGTGGGATTACGGTTATCAGATCGCAGGCATGGCCAACCGCACCACGCTGGTGGACAACAACACGTGGAATAACAGCCACATAGCACTGGTCGGTAAAGCCATGTCCTCCAATGAGAGTGCAGCCTATGAGATTATGAAGTCCTTGGATGTGGATTACGTCCTGATCATTTTCGGAGGAGTGATCGGATATTCAGGCGATGACATTAACAAATTCCTGTGGATGGTGCGCATTGCTGAGGGAGAGCATCCTAAAGATATCAGGGAAAGCGATTACTTCACGCCGCAGGGGGAGTTTAGAGTAGACAAGGCCGGCTCTCCAACCCTACTCAACTGCCTGATGTACAAGATGTCTTACTATCGCTTTGGGGAGATGCAACTGGACTTCCGCACGCCTCCTGGATTTGACCGGACACGAAACGCAGAGATCGGCAACAAGGACATCCGTCTGAAGCACCTAGAGGAGGCCTTCACCTCCGAGCACTGGCTGGTGCGCATTTACAGGGTGAAGAAGCAGGAGAACCGGCAGGCTCTGGACCACAAGCTCCGCAACATCGCAGCTAAGCAGAAGTACACCTCAAAAAAGACAGCCAAGAGGAAGAGGGGACACATCAAAAACAAATTGGTTCTGAAAAAAGGCAAGAAACTGAACAAGAAGTCTGTTTAGCTATTGAATGAAAACGTTGAGAGCgggaaaaaagaggaaaattaAAGACAAGGACAAATGCAACTAGTAAGTAATCCACCAATcaaaaagaagaacaaacatGTTGTCTGGCGCCGCCCACCTGAGAACGTTTGATTGGAGGCTTTTGGTCCTGCGATTGCCATGACGACACGGAGTTTCCATGATGGGTTCAAGGATGAGGCGAAGATGGGGATCTGCACCGTGGTTTTAATCTGACAACTCTggacttatttttgtttttgttcttttttttccgttttttttttttctttctttcttttgtactTGAATGTGCTGGCGAAGCGAGAGTCCGTGTCTCAAACGGCGCGCGCTATTTTTGTGGTACAGTTTAATATAATCCAACCGAATGCTAAAACAACCAACAAATATGAATTTCATGAAGCTCAGTGAACCTTGGAGCaccaaagagatttttttttttttttttttttgtcagagccTGTGATAAATTAACTTTTGATTAAAAAcgacattaaaaaataaaagagatcaGAGCCGTCTGAAGTATGACAGCCCCTAAAACGCTCTCTTGGTTTCACCTGTTATCTGACAAACCCGTGACAGAATGCAGTGGGCTCTTTGTGgctctgagttttttttttttttcttttttcctaaGGCAGACATCGCAGAGGACTCGATTGTTAGTAATGTTTAACTATTGTGGTGATTTTGAAtataaatttttgtttgttacatcattttgaatgtttttttgtttttgtttcgtttttctATCGGTTGTAAGATTTTATGCAATAATTCTAAattcaaatgaagaaaatccgcttttatttcttctgttgcTCATGTGTTTTGTCCAGAGGGGGCGCTGTGGTTTGGCATCTCCTGCGCACACTAAAAACAGATGCTTCTAGATGTTTTTCTTGGGCCAATTATAAATCTAATTTACCCCCTTCCCAAACGACTGTCTGCCAGGACAAAGAGTGAATTGAATTAGTTGTAGGTTTATAAAATGCTGCATTACTAGCCTGAATGCACTTTGTCTTAGTTCACCTTTAATGTGGATCCACTACTGAGTAGCATGCAGGTGGAGAGTGCGTATTTTTAGTGTGaatattcagttttgttttttttttgtttttttttttttttaaatgttgaaaaggGCGCTTCCTGCAACACCTAGTGGGTTTTCTCTTCCTCGTTTCTTCTGGGCTgccatttaaactttttttcctcctttgtTTTCTGCCTTTCTGGTTCTCATCCTCGCGTATTTCTTTTGCTTCAtctgtttttgtaagaaaattaGAAGGAAAATTTGatcgtttttttcccctcttctcCACAACATATCCATATTATTCTACTCGGGAGAGGTCTGGAGCTCGGGGGAAGGTATTTATTAACAAGAATGCATTTGAAGTCGAGAAGAGGAAGCCTTTCATCCTGAaatgcaaaaactatttttttttttttttttttttttttttttttcaagtgaaaATTTATTccataaattgtaaaataaaaaaaaaatattaaaaaaaagagcgtGAGAAAGTCAACGATGCTGTTTGTGAGAATGAGTTGATGCCATTTGTGATTAAAAGACTTAATGAAA

Function

symbol description
stt3b Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity and metal ion binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Orthologous to human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B).

NR:

description
PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

GO: NA

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU170042 False 1938 TUCP 0.39 2 21883929 21894532
XM_043261107.1 True 4293 mRNA 0.47 16 21883909 21921531

Neighbor

gene id symbol gene type direction distance location
rbms3 rbms3,LOC107730162,LOC107668303,LOC107713827,LOC108434201 coding upstream 61436 21703724 ~ 21822473 (+)
si:dkey-29b11.3 LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280 coding upstream 229850 21651508 ~ 21654059 (+)
LOC122360960 NA coding upstream 478085 21392842 ~ 21405824 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding upstream 505067 21365339 ~ 21378842 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding upstream 529293 21346657 ~ 21354616 (+)
gpd1l gpd1l,LOC107600618,LOC107705153,LOC107666803,LOC107551192,LOC107713825,LOC108434205,LOC103034694 coding downstream 40689 21962220 ~ 21968547 (+)
tmem42a si:dkey-99n20.7,LOC107705805,LOC107666806,LOC107600663 coding downstream 49691 21971222 ~ 21972500 (+)
ebag9 ebag9,LOC107666870,LOC107705161,LOC107600620,LOC107679646,LOC107713822,LOC107551191 coding downstream 62359 21983890 ~ 21989916 (+)
gdf6a gdf6a,LOC107705204,LOC107600621,LOC107666829,LOC107551190,LOC107679643,LOC107713806 coding downstream 82704 22004235 ~ 22010159 (+)
LOC122360094 tmem74,LOC107705834,LOC107666858,LOC107713801,LOC107679640,LOC107551181,LOC107579295 coding downstream 215037 22136568 ~ 22139827 (+)
G115157 NA non-coding upstream 54378 21828216 ~ 21829531 (+)
G115134 NA non-coding upstream 189365 21693494 ~ 21694544 (+)
G115074 NA non-coding upstream 492747 21390781 ~ 21391162 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding upstream 714556 21167994 ~ 21169353 (+)
G114983 NA non-coding upstream 741879 21141042 ~ 21142030 (+)
G115200 NA non-coding downstream 75479 21997010 ~ 22001617 (+)
G115288 NA non-coding downstream 605626 22527157 ~ 22530262 (+)
G115342 NA non-coding downstream 845970 22767501 ~ 22768460 (+)
G115401 NA non-coding downstream 1061530 22983061 ~ 22983700 (+)
LOC122359996 NA non-coding downstream 1077918 22999449 ~ 23003110 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 10937 21849989 ~ 21872972 (+)
siglec15l NA other upstream 1113517 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 1579225 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 1656832 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 2236103 19643829 ~ 19647806 (+)
G115193 NA other downstream 55586 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 988004 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 1043038 22964569 ~ 22975774 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 1188752 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 1243035 23164566 ~ 23169677 (+)

Expression


Co-expression Network