LOC122359863 (aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105)


Basic Information

Item Value
gene id LOC122359863
gene name aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22909535 ~ 22915477 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170321
acGAATCAGACGTCGCTACTAAATCGTCTCTCGTGTCGGATTGTATTTCCTGCAGTGAGTGAAAAGCAAAGAGATGCAACACGCGATCAACTGGgcaattactattattacttattattttaatcagtcTGTAGCGTTTTTGGAGTGAGCACAGAAATTGATTACGATAACTTGGAATTTTcctatgtgtgtttgtttgtgtgtttgtgtaaaacaGTCGTTAGGAGAATGTAAATAAGGAGAGAGTTGCTAAAGCGCATGTAAAGCAGCCGCCCTCCTTTTTCTGGACTGGACCGAGTTTGTTATTAGACTCCCGCACGCCTCGAACCGCGAACGAACAGCTCGGTTTCATTAGGCCTGTCAGTACTTGTCATGGGCAGTTTATATCTCTCAAGAGGTCGGTGTATTCTCCGGCAGGTGTTCTTCGGCCTACCCAGCATGCTGCGGCGGCCGTACAGCCTCGACGTGTCAGCGCAGCTCCTGCGGACTCGAGCCTTCATAGAAGGGCGCTGGGTCTCCGCGGCGTCCACCTTCCCCGTGTTAGATCCAGCCACGGGAGAAGAGATCGCCAAGGTGTCGGACTGCGGTACGAAGGAAGCTCAAGACGCCGTCAATGCTGCATACAAAGCTTTTCACCTGTGGAAGAATCACACGGCCAAGGAGAGGAGCATTTTATTACGAAAATGGTTTGATCTGATCAATCAGCACAAGGAAGATCTTGCCAAGTTGATCACAGCAGAGTGTGTAGG
>XM_043260053.1
AAGGATTCGActcaaacgattcgttcacGAATCAGACGTCGCTACTAAATCGTCTCTCGTGTCGGATTGTATTTCCTGCAGTGAGTGAAAAGCAAAGAGATGCAACACGCGATCAACTGGgcaattactattattacttattattttaatcagtcTGTAGCGTTTTTGGAGTGAGCACAGAAATTGATTACGATAACTTGGAATTTTcctatgtgtgtttgtttgtgtgtttgtgtaaaacaGTCGTTAGGAGAATGTAAATAAGGAGAGAGTTGCTAAAGCGCATGTAAAGCAGCCGCCCTCCTTTTTCTGGACTGGACCGAGTTTGTTATTAGACTCCCGCACGCCTCGAACCGCGAACGAACAGCTCGGTTTCATTAGGCCTGTCAGTACTTGTCATGGGCAGTTTATATCTCTCAAGAGGTCGGTGTATTCTCCGGCAGGTGTTCTTCGGCCTACCCAGCATGCTGCGGCGGCCGTACAGCCTCGACGTGTCAGCGCAGCTCCTGCGGACTCGAGCCTTCATAGAAGGGCGCTGGGTCTCCGCGGCGTCCACCTTCCCCGTGTTAGATCCAGCCACGGGAGAAGAGATCGCCAAGGTGTCGGACTGCGGTACGAAGGAAGCTCAAGACGCCGTCAATGCTGCATACAAAGCTTTTCACCTGTGGAAGAATCACACGGCCAAGGAGAGGAGCATTTTATTACGAAAATGGTTTGATCTGATCAATCAGCACAAGGAAGATCTTGCCAAGTTGATCACAGCAGAGTGTGTAGGGAAGCCCATGAAGGAGTCTGTCGGTGAGATGACATACTCTGCCTCCTTTCTGGAGTGGTTTTCTGAAGAGGCCAGACGTGTGTATGGAGATATCGTGGCACCTCCAGCCAAGGACCGCAAGATCCTGTTACTCAAGCAGCCGGTGGGAGTGGCTTCTATCATCACACCTTGGAACTTCCCCAGTGCCATGATCACCAGGAAGGTGGGTGCAGCGCTGGCGGCGGGCTGCACTGTGGTGGTGAAGCCGGCTGAGGATACGCCTCTCTCTGCTCTGGCCCTTGCTGAGCTCTCGGTTCAGGCTGGCATTCCACCTGGGGTGCTTAATGTAGTTCCCTGCTCAAGAGAAAAGACTCCCGCTGTAGGGGAGCTGCTCTGCACGGACCCTCTTGTGGCCAAAATCTCATTTACTGGCTCCACAGCCACTGGCAAAGTACTGTTAAGACATGCTGCAGGGACGGTCAAAAGGGTCTCTATGGAGTTAGGAGGACATGCACCCTTTATTGTATTTGACAGTGCTGACGTAGATAAAGCCGTTGCAGGAGCAATGGGTTCCAAATTCAGGAACTCAGGACAGACCTGCGTGTGCTCCAATCGCTTTTTGGTACAGAGTGGGATCCACGATGCTTTCATCGAAAAGTTGGCGAAGGCTATGGATGCTGAACTGAAGCGGCACGGCTCAGAGCCCACCACCACACAGGGGCCGCTCATCAACACCAGCGCCACCGAGAAGGTGGAGAACCAGATTACAGAAGCTGTGTCACAGGGAGCTGTCATAGTTCGAGGTGGGAAGAGGCTGGAGGGCTCCTTCATGCAGCCCACCCTGCTGTCCAACGTCAACAACGACATGCTCTGCATGCGAGAGGAGACCTTTGGACCCCTGATTCCTGTTGTTAAGTTCAACACAGAACAGGAGGCACTCGCCATTGCCAATGCTTCTCCTGTTGGTTTAGCAGgTTACTTTTACTCCAGAGACATCAGTCAGATCTGGCGGGTGGCTGAACAGATGGAAGTGGGCATGGTCGGCGTGAATGAAGGTCTGATCTCCACCACAGAAGCATCATTTGGTGGAATTAAACAGTCTGGAATGGGCAGAGAAGGATCTAAATATGGCATTGATGAGTATCTAGAAATAAAGTACATGTGTTTGGGGGGACTCTCTCTTtaaagctgctgctgctgcttatTAGCAGGCCGTATGTCATTTTCTAAGCAATACTAAAAACATGAAtccaaaaaaacactgttaacCACTGTCTATTAACCATATAGAACTGAAAATGACTATACagatacattttattgtcaGGATATTTGTTGCACAAATTGGTAAAAATTGTACTCTTTGAGATTCATCTGCCATCAATGTAACCTagttaaaatgagattttttttttatgcctgaaaaatatctaaacattctttAAAGCAGGATAACTTAACTTTTAGTTCAAGATGAAATGAGAGAATATATCttcaatatataaaatttgttttagaCCGAAAACGAGACCCAGTTTACAGTGTATAAATGTATCGCTAGGGGTAGATACAGTGAGAAATCAAAGCACAATCCTTCTttagaaaatcatttaaatgttcagCTTACTAAGTGTTCTATTTTGTAATTCTAGAAATAGAGTAAGACTGttaaaaatgaatcgttgaCTGTGATGGGATGTTTTGGGTGCTCATTCTGCTGGATAGAAACTTCTGAATTGAAGTACTGCAACATGGAGATTAGTCAAACAAGTTAACAAATTTGTCATTGTGGCCAAATGTTGTAAGTgccagtgtatttttttaaccgTTCTAGTGttgttttctgaatttttttttttttttttttttaattattgtaaatattaattttctattcaaataCCTAACTGTATTGTGAAGTGTTGTAGgtatgaaaatgtttataagtatataatttttttaacttgggAGTGAAATTTtgcaaataagcaaataaaggTACAAAGACTACATGTACATCTGAAAGCGTTGGTAAATAACCAACTTCTGCTGTTCGTTTAGTTctaattttcataaataatataaaattaagccCGAATATGCACATTAACAAACAGAATTgcactgttatttttaatgtagctcattttcattgcatttctgAATGATTCTGTAAATATTGAACATATGGTTATAAAACAGCCTTAACCTCTGTAAA

Function

symbol description
aldh5a1 Predicted to enable NAD binding activity and succinate-semialdehyde dehydrogenase (NAD+) activity. Predicted to act upstream of or within galactosylceramide metabolic process; gamma-aminobutyric acid catabolic process; and short-chain fatty acid metabolic process. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in succinic semialdehyde dehydrogenase deficiency. Orthologous to human ALDH5A1 (aldehyde dehydrogenase 5 family member A1).

NR:

description
PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial-like

GO: NA

KEGG:

id description
K00139 ALDH5A1; succinate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
TU170321 False 749 TUCP 0.49 2 22909561 22911076
XM_043260053.1 True 2972 mRNA 0.44 11 22909535 22915477

Neighbor

gene id symbol gene type direction distance location
elp6 elp6,LOC107756165,LOC107705426,LOC107704995,LOC107700678 coding upstream 550 22907213 ~ 22908985 (+)
gabpb2b LOC107700702,LOC107755760,LOC107556107,LOC107705407,LOC107588481 coding upstream 3678 22901809 ~ 22905857 (+)
bnipl bnipl,LOC107588479,LOC107556108,LOC107700698,LOC107705419,LOC107755792 coding upstream 18852 22880673 ~ 22890683 (+)
prune prune,LOC107681429,LOC107705398,LOC107700697,LOC107588509,LOC107556083,LOC107756020 coding upstream 30325 22868956 ~ 22879210 (+)
myo1eb myo1eb,LOC107705358,LOC107755841,LOC107700696,LOC107588508,LOC107681422 coding upstream 40807 22856300 ~ 22868728 (+)
LOC122359865 LOC107700662,LOC107556081 coding downstream 14944 22930421 ~ 22933982 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding downstream 89435 23004912 ~ 23008459 (+)
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding downstream 115511 23030988 ~ 23053060 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding downstream 261347 23176824 ~ 23181429 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding downstream 269551 23185028 ~ 23197722 (+)
G115342 NA non-coding upstream 141075 22767501 ~ 22768460 (+)
G115288 NA non-coding upstream 379273 22527157 ~ 22530262 (+)
G115200 NA non-coding upstream 907918 21997010 ~ 22001617 (+)
G115157 NA non-coding upstream 1080004 21828216 ~ 21829531 (+)
G115134 NA non-coding upstream 1214991 21693494 ~ 21694544 (+)
G115401 NA non-coding downstream 67584 22983061 ~ 22983700 (+)
LOC122359996 NA non-coding downstream 83972 22999449 ~ 23003110 (+)
G115384 NA non-coding downstream 93127 23008604 ~ 23009835 (+)
G115371 NA non-coding downstream 136943 23052420 ~ 23077876 (+)
G115416 NA non-coding downstream 175866 23091343 ~ 23095410 (+)
G115193 NA other upstream 930167 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 988004 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 1036563 21849989 ~ 21872972 (+)
siglec15l NA other upstream 2139143 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 2604851 20267541 ~ 20304684 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 49092 22964569 ~ 22975774 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 194806 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 249089 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 306573 23222050 ~ 23223928 (+)
G115449 NA other downstream 335905 23251382 ~ 23254566 (+)

Expression


Co-expression Network