LOC122360203 (LOC107704907,LOC107714612,LOC107587796)


Basic Information

Item Value
gene id LOC122360203
gene name LOC107704907,LOC107714612,LOC107587796
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23110283 ~ 23116815 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170363
CAGAGGTAGCGGGGCTTTCCAGCGCAGAGGGCAGAAAAAGAGCAACAGAGAGGGTTAAGAGTGGGTGAcgtaaaaaaaaggtacaagaaaggaaagaaaaaaatgattccCCTACCTGCGGCGGATGAACTGAGACATCGCACAAAAAGACAGGGCAAGCAAgagtgacagacagacagaaagaaaaaagaaggcAACTGACATAATAGCTTAGACCAGGTCATCATGACAGAGTAATCATCAATTCCTTGGTAACTTGCGTAAACGGATCGAGACATCACTTCCATATTTGGAGTTAAGGGGTGTGTAGTCAACAGACTTCATATGACTGCACAAAAACGCTCACACTGAAGGGATCGAATCGAAAAAACACTGAACGCAGCCAAGATGGGAGATCAGAAATGCAGGACATGTCCGAAAGgAAAATATATGTTTGCCAGCTGCAATGCCACATCGGATACAGTGTGTAAAATCTGTCCACGGCGCACATTTATTGATCAGGAAAACAAACTGAGCCAGTGTCGAGCCTGCAGGGAGTGCTCCATCgCCAACAACATGGAGATGGAAAAGGAGTGTAAGgaagacaaaaatacagagtGCAAGTGTAAGCCGGGATACTACTGTACACACATAAGTGAATCCCACTGCGATAACTGCACGCCCGTCTCCAAATGTCCTCCAGGGAAAGGAGTTGCCTTTCATTGTGAGTAACCCTTACTTAATCAGCATTTGGTTTCCAAAAACGTTGGTGCCTTAGCGTACTTCCAAATATGA
>XM_043260616.1
CGCAGAGGGCAGAAAAAGAGCAACAGAGAGGGTTAAGAGTGGGTGAcgtaaaaaaaaggtacaagaaaggaaagaaaaaaatgattccCCTACCTGCGGCGGATGAACTGAGACATCGCACAAAAAGACAGGGCAAGCAAgagtgacagacagacagaaagaaaaaagaaggcAACTGACATAATAGCTTAGACCAGGTCATCATGACAGAGTAATCATCAATTCCTTGGTAACTTGCGTAAACGGATCGAGACATCACTTCCATATTTGGAGTTAAGGGGTGTGTAGTCAACAGACTTCATATGACTGCACAAAAACGCTCACACTGAAGGGATCGAATCGAAAAAACACTGAACGCAGCCAAGATGGGAGATCAGAAATGCAGGACATGTCCGAAAGgAAAATATATGTTTGCCAGCTGCAATGCCACATCGGATACAGTGTGTAAAATCTGTCCACGGCGCACATTTATTGATCAGGAAAACAAACTGAGCCAGTGTCGAGCCTGCAGGGAGTGCTCCATCgCCAACAACATGGAGATGGAAAAGGAGTGTAAGgaagacaaaaatacagagtGCAAGTGTAAGCCGGGATACTACTGTACACACATAAGTGAATCCCACTGCGATAACTGCACGCCCGTCTCCAAATGTCCTCCAGGGAAAGGAGTTGCCTTTCATTACACGTTCAAGACAAACACTGTGTGCATCCCCTGCCCAGTGGGGACCTACAGCGATGTGGACGACTACATTTCCAGCTGCAAAAATTTTACAAGTTGTGATAATTTGGGTCGACATCTGGAGGTTCCTGGGACCACAAAATCAGATGTTGTGTGTGGACAATTTAAATCATCTTGTTCATGGATGTTACCTGCTAGCCTGTGGGCGGGGATCGCGACTACTTCgctgattatttttttgatcCTGTTTAAAATTTATTCGAGAAACAAACGTCAGTCAAAAAGATTAGAGATCTCTTTAAGCCACATCTCGCCAGTGCTTCCTCCAGACATCCTGAAATACCCTGCAGACTGTGACGTGGAGAAACACGCAGAATGCCAGCAGCTCACACAATTAGTTGGAAAGTACCCGGAAATGGACAGCAGCATACAGTCTGATGGATTCTTGCCAACTCTGAGAGTGTCAGAGAAATACAGGCCCTCAGGTGCAGCAAACGGATATACAGGCAGCTTCACAAGCCACTCGAACTATCAGTCAGAGCCACAGGAGTCTGAATGGAACGATTAACATCCTATTAACCTGACAATTATCTTCAGTATAGAGCGGCTTCATCTACCAGCGTAGGAGCTTTCCTTCTCTTCTGGTAGAATGtgtaaataactaaatgtatttttttttttttttttacaagaaaatattgaatatacgttttacaatatatgtatgaaatatgtATGAAAGCATACACTGCATGTACCAGATACTGCAGGTACacagtatgtttttattgtagtaatGAAAATATACGGACAATATAAAagttgtttcatttcattttaataaacaattggTGATTAAATAATCCTTGATTGGGAA

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170363 False 774 TUCP 0.45 3 23110283 23112166
XM_043260616.1 True 1556 mRNA 0.42 8 23110305 23116815

Neighbor

gene id symbol gene type direction distance location
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding upstream 57223 23030988 ~ 23053060 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding upstream 101824 23004912 ~ 23008459 (+)
LOC122359865 LOC107700662,LOC107556081 coding upstream 176301 22930421 ~ 22933982 (+)
elp6 elp6,LOC107756165,LOC107705426,LOC107704995,LOC107700678 coding upstream 201298 22907213 ~ 22908985 (+)
gabpb2b LOC107700702,LOC107755760,LOC107556107,LOC107705407,LOC107588481 coding upstream 204426 22901809 ~ 22905857 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding downstream 60009 23176824 ~ 23181429 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding downstream 68213 23185028 ~ 23197722 (+)
phc1 LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919 coding downstream 117642 23234457 ~ 23243764 (+)
mboat7 mboat7,LOC107587783,LOC107716833,LOC107711731,LOC107700769,LOC107552840,LOC107704925 coding downstream 150695 23267510 ~ 23273792 (+)
tmc4 tmc4,LOC107711726,LOC107700770,LOC107552843,LOC107579598 coding downstream 157111 23273926 ~ 23281694 (+)
G115420 NA non-coding upstream 1250 23108123 ~ 23109033 (+)
G115416 NA non-coding upstream 14873 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 32407 23052420 ~ 23077876 (+)
G115384 NA non-coding upstream 100448 23008604 ~ 23009835 (+)
LOC122359996 NA non-coding upstream 107173 22999449 ~ 23003110 (+)
G115422 NA non-coding downstream 24258 23141073 ~ 23143458 (+)
G115462 NA non-coding downstream 148657 23265472 ~ 23266469 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 418665 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 438806 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 456158 23572973 ~ 23576648 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 134509 22964569 ~ 22975774 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 194806 22909535 ~ 22915477 (+)
G115193 NA other upstream 1130915 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 1188752 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 1237311 21849989 ~ 21872972 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 47751 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 105235 23222050 ~ 23223928 (+)
G115449 NA other downstream 134567 23251382 ~ 23254566 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 158174 23274989 ~ 23358779 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other downstream 492633 23609448 ~ 23612393 (+)

Expression


Co-expression Network