LOC122360067 (calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458)


Basic Information

Item Value
gene id LOC122360067
gene name calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22964569 ~ 22975774 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170371
CTCAGCAGTAAGTCACCAGTGCGCGCGCTACCTGCGGCGCGCGGAGACAGAGGTGCGCTGGGCGTTTGCCATCATCTGAGGGGAGGGCGGAACTTCACTTAAATACCGGAGACATCACAGAGCACCGTCTCACAGCATCGGTCTCACAGCTTCAGCGCCCGACACACGGAGAAAACATGGCAAACGCCTACCTGCAAGGAGTAGAGATCTCAGCCTCTCAGTTCCTGGATATATTTCACCATTATGACAACGATGGTAATGGATATATCGAGGGGAAGGAGTTGCAGAATTTTATCAAAGAACTTCAGCAAGCTCGAAAACAAGCAGGACTGGAACTAACAGACAAAATGAAGGCCTTTGTGGAGAAATATGAGCAAAACGCTGATGGAAAAATAGGTATCATTGAGCTGGTTCAAATACTCCCTACAGAGGAAAActtcttattatttttcagaCAACAGCTGAAATCCTGTGCAGAGTTTATG
>XM_043260385.1
AGGTGCGCTGGGCGTTTGCCATCATCTGAGGGGAGGGCGGAACTTCACTTAAATACCGGAGACATCACAGAGCACCGTCTCACAGCATCGGTCTCACAGCTTCAGCGCCCGACACACGGAGAAAACATGGCAAACGCCTACCTGCAAGGAGTAGAGATCTCAGCCTCTCAGTTCCTGGATATATTTCACCATTATGACAACGATGGTAATGGATATATCGAGGGGAAGGAGTTGCAGAATTTTATCAAAGAACTTCAGCAAGCTCGAAAACAAGCAGGACTGGAACTAACAGACAAAATGAAGGCCTTTGTGGAGAAATATGAGCAAAACGCTGATGGAAAAATAGGTATCATTGAGCTGGTTCAAATACTCCCTACAGAGGAAAActtcttattatttttcagaCAACAGCTGAAATCCTGTGCAGAGTTTATGGAGATTTATGACGCTGATCACAGTGGATACAAAGCTGACGAACTTAAGaattttttgaaAGACCTGCTCCAGAGAGCTAAAAAACCATATGATGAGAAGAAATTAGAGGAGTACACACTAACTACGctgaaaaTTTTCGATTCAAATAAGGATGGGAAATTATGTCTGTCAGAAATGGCACGactgTTACCGGACCAGGAGAACTTTCTACTTAAATTTCAGGGGGTTAAAATGGCCAGAAAAGAGTTCAACAAGATTTTTGAGTTATACGATCAGGACAGGAACGGTTACATGGACGAGAATGAGCTTGACGCCCTCCTCAAAGACCTTTGTGAGAAAAACAAGAAGGTTCTAGAAGTCAACAAAATCCCGACGTATAAGAGCGCCATCATGGCTCTGTCTGATGGTGGCAAGCTCTACAGAACAGAGTTAGCGTTGGTGTTGTGCGCAGATGAGATGTGAACACTTCCGTCTGTACACATTATCCCAGAACCCCATCCTCAGCTCGTCTGTGACGCGTAAAATAGCTAGAACCCTCTTATGTTCTTTCATTTTGGACATGGATTTCACATAGACAGGCAACCCTGTGGCACATACTTTTCAATTTGTTGTTTCTATACGGTTTCTAAGTGTACAGATTTTTTAACAATGGCACACGTACAATACTTACAACCTACACTGCATACATGAACATGATATTTCCCTTAACAAAAGAAGAGACCCAACATGCTTACAAATCGCCCATCTCgattcaatataaaaaaaatccaccaaTTCAGTATTGATTTATCTTACAATATCTTAGACAAAAGCAATAATGTCCTCAAGGAATGCTGACGAAACACGGCCTGTTGGTGGGATCTATGTAAAAC

Function

symbol description
calb1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion homeostasis. Predicted to be active in several cellular components, including cytosol; dendritic spine; and terminal bouton. Orthologous to human CALB1 (calbindin 1).

NR:

description
PREDICTED: calbindin-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA

RNA id representative length rna type GC content exon number start site end site
TU170371 False 485 TUCP 0.48 4 22964569 22970526
XM_043260385.1 True 1307 mRNA 0.42 12 22964619 22975774

Neighbor

gene id symbol gene type direction distance location
LOC122359865 LOC107700662,LOC107556081 coding upstream 30587 22930421 ~ 22933982 (+)
elp6 elp6,LOC107756165,LOC107705426,LOC107704995,LOC107700678 coding upstream 55584 22907213 ~ 22908985 (+)
gabpb2b LOC107700702,LOC107755760,LOC107556107,LOC107705407,LOC107588481 coding upstream 58712 22901809 ~ 22905857 (+)
bnipl bnipl,LOC107588479,LOC107556108,LOC107700698,LOC107705419,LOC107755792 coding upstream 73886 22880673 ~ 22890683 (+)
prune prune,LOC107681429,LOC107705398,LOC107700697,LOC107588509,LOC107556083,LOC107756020 coding upstream 85359 22868956 ~ 22879210 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding downstream 29138 23004912 ~ 23008459 (+)
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding downstream 55214 23030988 ~ 23053060 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding downstream 201050 23176824 ~ 23181429 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding downstream 209254 23185028 ~ 23197722 (+)
phc1 LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919 coding downstream 258683 23234457 ~ 23243764 (+)
G115342 NA non-coding upstream 196109 22767501 ~ 22768460 (+)
G115288 NA non-coding upstream 434307 22527157 ~ 22530262 (+)
G115200 NA non-coding upstream 962952 21997010 ~ 22001617 (+)
G115157 NA non-coding upstream 1135038 21828216 ~ 21829531 (+)
G115134 NA non-coding upstream 1270025 21693494 ~ 21694544 (+)
G115401 NA non-coding downstream 7287 22983061 ~ 22983700 (+)
LOC122359996 NA non-coding downstream 23675 22999449 ~ 23003110 (+)
G115384 NA non-coding downstream 32830 23008604 ~ 23009835 (+)
G115371 NA non-coding downstream 76646 23052420 ~ 23077876 (+)
G115416 NA non-coding downstream 115569 23091343 ~ 23095410 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 49092 22909535 ~ 22915477 (+)
G115193 NA other upstream 985201 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 1043038 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 1091597 21849989 ~ 21872972 (+)
siglec15l NA other upstream 2194177 20767278 ~ 20770392 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 134509 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 188792 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 246276 23222050 ~ 23223928 (+)
G115449 NA other downstream 275608 23251382 ~ 23254566 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 299215 23274989 ~ 23358779 (+)

Expression


Co-expression Network