G115420


Basic Information

Item Value
gene id G115420
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23108123 ~ 23109033 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170404
GCATCGTCCTCGCAATCAAAGCTTTCTTCTAGGTCCAAATGTATGAGAGTGAGCGTGATTTTGTGTCCGGTCGTAGCACACTTTTTCCAGGTCATGTTAGAATGGGGCTCGTACCCTCGTGGATATCCAGGTGACTGCACCCATCCAGCCAAAGCCACTGACCCACACACAGGAAGAAGGAGGACAATAACaccAAAAAACAATCATGATTACAAGTGTTAAAACGCAGCCCGCCCTCTCCTTCTGCACTTTCACTTTCATGCTCTTCGTGCATCATCATGTCCAGCCCTCTTTTCCCCTAAAAACAAAAGTCAACTTACTCAAACTGGATGTTTCCCAACACTTGTCAGTGGGCGTTCACCTTGAACTGATGTGAACCGGAGGGCAGATATTTAGTGACTGCTCCAGACAGACTGTTGTGGGGTATACGTCATACtaacattaataatgcattaatttaaagcatatttagttaaaaataaatacataattcaaatactaaatgagtaaataaataagaaagtcAACATCTTTACTAATACAAACACTATTTCAGTTAACTGACAAGTGACAACTTATGCATATGAGCCAGAAGCACATTGGTTACAGTACAATGCTGAAACCCCCGGATACACATATAAGCGCACTTATAACTtatacctatatcctgcactttctgcttattgcactcctggacAGTATGCTGCCTGGCGTCAGAaatggaaaacaataaaaagtaattgaggaggagaagagagcaAAAAGAGAGATG

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU170404 True 772 lncRNA 0.41 2 23108123 23109033

Neighbor

gene id symbol gene type direction distance location
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding upstream 55063 23030988 ~ 23053060 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding upstream 99664 23004912 ~ 23008459 (+)
LOC122359865 LOC107700662,LOC107556081 coding upstream 174141 22930421 ~ 22933982 (+)
elp6 elp6,LOC107756165,LOC107705426,LOC107704995,LOC107700678 coding upstream 199138 22907213 ~ 22908985 (+)
gabpb2b LOC107700702,LOC107755760,LOC107556107,LOC107705407,LOC107588481 coding upstream 202266 22901809 ~ 22905857 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding downstream 67791 23176824 ~ 23181429 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding downstream 75995 23185028 ~ 23197722 (+)
phc1 LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919 coding downstream 125424 23234457 ~ 23243764 (+)
mboat7 mboat7,LOC107587783,LOC107716833,LOC107711731,LOC107700769,LOC107552840,LOC107704925 coding downstream 158477 23267510 ~ 23273792 (+)
tmc4 tmc4,LOC107711726,LOC107700770,LOC107552843,LOC107579598 coding downstream 164893 23273926 ~ 23281694 (+)
G115416 NA non-coding upstream 12713 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 30247 23052420 ~ 23077876 (+)
G115384 NA non-coding upstream 98288 23008604 ~ 23009835 (+)
LOC122359996 NA non-coding upstream 105013 22999449 ~ 23003110 (+)
G115401 NA non-coding upstream 124423 22983061 ~ 22983700 (+)
G115422 NA non-coding downstream 32040 23141073 ~ 23143458 (+)
G115462 NA non-coding downstream 156439 23265472 ~ 23266469 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 426447 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 446588 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 463940 23572973 ~ 23576648 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 132349 22964569 ~ 22975774 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 192646 22909535 ~ 22915477 (+)
G115193 NA other upstream 1128755 21977117 ~ 21979368 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other upstream 1186592 21883909 ~ 21921531 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other upstream 1235151 21849989 ~ 21872972 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other downstream 1250 23110283 ~ 23116815 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other downstream 55533 23164566 ~ 23169677 (+)
rps9 rps9,LOC107587787 other downstream 113017 23222050 ~ 23223928 (+)
G115449 NA other downstream 142349 23251382 ~ 23254566 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 165956 23274989 ~ 23358779 (+)

Expression


Co-expression Network