G115449


Basic Information

Item Value
gene id G115449
gene name NA
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23251382 ~ 23254566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170450
TCGCTCTCATTCTATCTGTGCACTTCTGTTACTGAGATTAATACCTTGTTCTCATGAATGTGATTTTGTGAATGTCTGATGATCCCTGCGGTGCACTTGTGTTCTGTCTTGTAAGATCTTATAAATTTAAGCATACAtgtctcattttaaaatctactgACATTTGATATCTACAAACATTACAATACTCATGAAAACTGAGAACGTTTTTTATTGAACAGTGATGTGATATACAGAGCTTAAATTTACAAAGCTACCACAAAAAGTGAAGTTTAAACATATAACTCTAATGAAGGCCGCACAGTTGTTTCTCTGACACATAAGGTGGAGTGTTGATCAGGATGAGGTCCCTCCCATTTCTctcctgaagaaaaaaaggacaGCGATTGGTCAGTGGGCACTCTGTTAACAGGAAATTTGCAAACTAAGTTATAAACAGACAGTGAGCAACGACCATCTTGTATTAGAATTCCATCAGTTTGTGAGCATTATGCCTATGAGTAACATTAGGAGGTATTGTTCTGTATTTCACACTGATACACGAGTTTGTTTGAACTATCagtaatatacatgtatgtgtgacTACTTCGTATATTATCTAATATGTCATTCATGGATTTATGAGTGAACGAACTTTGAATAAAACCTTCATATTCATTTGCGTCAGTCAACCACTTTATTAGTTCTattgtttagtatttttaaCAACGCCAGTAATTGGAGAAgcttttctaaaaatataaagcacaGTCAATTTGGAATATAATCGATGCCATTAATCAAACCAGTCATTGTTAGGGGTTATCTGAATTACATCCATAGTTACCGATTCGATGGGCTATGAGCTCAAATCTATCAGAACCAAAGAAGACCTCAGTCTTCCCGTTCACAAGACAAACAATGTATGGAAGACCAAAGGACTGAAAAAGAGCGAAAAAACAACGGTCAAAATAAGTTTGATAAtttatgaaataacaaaaaggCGTAAAAACACAAGTGAAAGGCACTGACTTGATAGTCCAGTGCTTCTTGTGTCACATTTCTCAGCCTGTCTTTGATTTGCTGAGATTTGGAAAGGATTAGAAGTTCCTCCACCTCATTGGCTGAGAGACCTGACTTTAATCCCGCCTGCGCAACACAGAAAGGCAAGTGTACAGTTAACACTATtttatcacaaaaatatatcattatacATGAAAAACTTCATGTATAATGGATAACAACTCACAAAAGATTACCATGATAATGTATTCCATTGAGATAGTGACTtatgtattttgatttaatttcttaatcTTGGATGCAGGATACCTCAGTGAGTAAGGCAGGATGGGTAATGTCCTGATGAGTGCACCAGATACTCCTCCAGAGCTCTCTAGATACCCTTTCCACCAGCAcacctctctctttttctttctcagctaCAGCTGTCACAAAACGCATCACATTCAAAGTACCTTTTTTTACAGGGCAAAGGTGGATTCACAGGGACCCCATAGAACTCAGACAGCTGCTTCAAGTCTGTCACCATGTAACAAAACTTATTCTGGACCAGTCCAGGTTCCTGGTTacctagaaaaaaaagaaaaaatgttttgtgaaaaaaatctcAACAAAGGCAAGAAATTGTTTGACATTTACCTGAACCACGAAAGACTCCTCCTAAAAATGCCGGTTTTAATTGGAGTTCGATGttccaaacatttttatagCGACACAGCACCTTGAAACACCACAATCAACAAAGGCACACTGCATTTACACCAAAGGCATAAAAATGAACATACTAAGGATGAAAAAATATCACATACCTCAAATGCCAGATAGGAATAAGGAGAGATGACATCATAGAACAACTTGACCACTTTTGTTGAACTGGACATCTGTGAGAAAGAATGAAATGTAGTATTCACAAATCCAAACACATAagtattgtgacgagtcggctgcccctttttattgtcatcatcaccccgtcctttattcgccgcccttcaccaggctcccgacgggagtgggcgtgtccgagaggagggacgtggtattggtcaggtctggcggcgtgtgacgaggcacacctgaagtgaatTAGacgttaccgtcgccgttaaataccgagcgcgcctctcctcgagagaccgtctcttcccccgtgcatgcacgctggtgtcctcgtgggtccaggaagggtgcgtgaaggagctcgcccCGCCGCCAGAGAAGCGCGTTTTCGGaccccgtagtccaggcgacgactgcaccCGTGTATCGCTGACGGGCCAGGCTGTCGAGCTGTTTATCCCCTTCAACTCTGCTGACCGGAGGAAAGACgagacggagatgccgcggaagaagccgctgcccctcgcgccccggaccagagacTCCGAcacttacctggacccttctccctggagcactacctgacctgcacttcccctgaagcacgacgaggacaccagttcccccgtttattTGGACGCTTTCTCCCctgtacactttattttgtatctattttgttaataaaaagcctctccgaggcctgacgccgtCGTTGGCTCTTCCCGTCACAGTATggattacaaaatataaaaaaaatgtataatgggATTCATAAACATAAATGGGAACACAATACCTTTGCCGCGTTGTTGTTCTTGGTCTTCTGATTCCTTTAAACAGGAGAAGAGTGTAGCTGCAGGTTGGAGATCACTAAGAGTTGGGATCTACAAAGAAAGAACCCTAACTTTTACTGTCTGTCTTGTGCTCTCCCTTTTAAACTTTCTCCAAACGTGTTTGGAagtcttttttcctttttggaaATCACTGGTCTTCCACCATGTCTCATGTCTATATTTAATGGTGGTTAGCAAACCAGCTTAGCTGGGATCAGTATGTTTCATGTGCTTCACACGTAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU170450 True 2918 TUCP 0.42 2 23251382 23254566

Neighbor

gene id symbol gene type direction distance location
phc1 LOC107672038,LOC107714597,LOC107724796,LOC107552845,LOC107587786,LOC107704919 coding upstream 7618 23234457 ~ 23243764 (+)
atn1 LOC107714603,LOC107587791,LOC107704916 coding upstream 53660 23185028 ~ 23197722 (+)
mlf2 mlf2,LOC107671951,LOC107704913,LOC107724787,LOC107714604 coding upstream 69953 23176824 ~ 23181429 (+)
LOC122360866 phactr4b,LOC107587745,LOC107597106,LOC107700669 coding upstream 198322 23030988 ~ 23053060 (+)
LOC122360864 LOC107732827,LOC107587847,LOC107704842,LOC107700682,LOC107756122,LOC107597135 coding upstream 242923 23004912 ~ 23008459 (+)
mboat7 mboat7,LOC107587783,LOC107716833,LOC107711731,LOC107700769,LOC107552840,LOC107704925 coding downstream 12944 23267510 ~ 23273792 (+)
tmc4 tmc4,LOC107711726,LOC107700770,LOC107552843,LOC107579598 coding downstream 19360 23273926 ~ 23281694 (+)
leng1 leng1,LOC107552839,LOC107716812,LOC107587899,LOC107704929,LOC107711733,LOC107700768 coding downstream 27252 23281818 ~ 23284256 (+)
lmtk3 LOC107716834,LOC107704931,LOC107587782,LOC107711732,LOC107700767 coding downstream 30477 23285043 ~ 23300830 (+)
prpf31 prpf31,LOC107700766,LOC107552837,LOC107711734,LOC107704928,LOC107587780,LOC107716835 coding downstream 46701 23301267 ~ 23306068 (+)
G115422 NA non-coding upstream 107924 23141073 ~ 23143458 (+)
G115420 NA non-coding upstream 142349 23108123 ~ 23109033 (+)
G115416 NA non-coding upstream 155972 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 173506 23052420 ~ 23077876 (+)
G115384 NA non-coding upstream 241547 23008604 ~ 23009835 (+)
G115462 NA non-coding downstream 10906 23265472 ~ 23266469 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 280914 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 301055 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 318407 23572973 ~ 23576648 (+)
G115730 NA non-coding downstream 410700 23665266 ~ 23677259 (+)
rps9 rps9,LOC107587787 other upstream 27454 23222050 ~ 23223928 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other upstream 81705 23164566 ~ 23169677 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other upstream 134567 23110283 ~ 23116815 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 275608 22964569 ~ 22975774 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other upstream 335905 22909535 ~ 22915477 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other downstream 20423 23274989 ~ 23358779 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other downstream 354882 23609448 ~ 23612393 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other downstream 561358 23815924 ~ 23822446 (+)
LOC122360598 NA other downstream 1519253 24773819 ~ 24832618 (+)
G116057 NA other downstream 1748696 25003262 ~ 25057168 (+)

Expression


Co-expression Network