G115796


Basic Information

Item Value
gene id G115796
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24084498 ~ 24085780 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU170962
ccaaaacctttattttaaagcaacaaaTGACTTTgcaataaatatgtacaaactCCTTGCCTTATAATGTGTATGATTCCCAGAATGGCCTCACAGACTATGTGATAGAAGTGAAAGCCAAATCCTTAGAATCAGTCCACTTCACAGATTAAACTGCTGATTGGCGGCCACAAGAGTGAGTTTCTCTTTTGTGTGCTGATTCAAAGATGTCATCTTTTTCTCTTGGCCTCAAATCTATAGACGGCTGGAACACTTTTGCTCTCCTCACGGACTTTGACTTTCTTACCCTTATcctgcaaaacTTGTTGTAGATCTTTTCTAGTCTGAATTTTTTGACTAATGACAAACATGTTCTTCTCTCTGTCAATACGCTGTGAAAGCCTTAAATACTGAAGTTCTCTCTGCTTCGCAAGTTTTTTATACTGTGAGGATCCACTGCTCCcataatgcttttcttttccaGGGTTTCTATTGTAGGTCTGTTATATGCTCGTCCCACCAATTCAGGTACTGTGTTGAGGTGTGTGGCCAGGTCAAAGTCCTCCACTAGCATGAAAAAgtaacagatttaaaaatattataaaaatgtaaaaaaataaaaaaaataaacaaaatgtctaGTTCAACAAGGGGTCCGCAGCAATACTACATATTggataaattattgttttattggcATAGCCATGTAGACAgcataaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170962 True 702 lncRNA 0.37 3 24084498 24085780

Neighbor

gene id symbol gene type direction distance location
pou3f1 pou3f1,LOC107755232,LOC107597138,LOC107700687,LOC107716828,LOC106582989 coding upstream 23355 24058250 ~ 24061143 (+)
rragca rragc,rragca,LOC107700741,LOC107704952,LOC107716860,LOC107730935,LOC106605136 coding upstream 233020 23844425 ~ 23851478 (+)
gja9a LOC107587758,LOC107716827,LOC107730936,LOC107704871,LOC107700742 coding upstream 242621 23836054 ~ 23841877 (+)
rhbdl2 rhbdl2,LOC107716826,LOC107704870,LOC107597139,LOC107730925,LOC107700688 coding upstream 248575 23831950 ~ 23835923 (+)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951,LOC107597130 coding upstream 252976 23823688 ~ 23831522 (+)
fhl3a fhl3a,fhl3,LOC107587754,LOC107716861,LOC107700740,LOC107704953,LOC107755242,LOC107597118 coding downstream 5328 24091108 ~ 24124467 (+)
gnl2 gnl2,LOC107587748,LOC107733428,LOC107704956,LOC107755255,LOC107597117 coding downstream 100361 24186141 ~ 24196724 (+)
snip1 snip1,LOC107733591,LOC107704875,LOC107587888,LOC107700737,LOC107755266,LOC107597115 coding downstream 113343 24199123 ~ 24202301 (+)
gpn2 gpn2,LOC107704877,LOC107700685 coding downstream 116817 24202597 ~ 24204444 (+)
arid1aa LOC107733715,LOC107587850,LOC107755275 coding downstream 124104 24209884 ~ 24229831 (+)
G115795 NA non-coding upstream 1428 24082856 ~ 24083070 (+)
G115793 NA non-coding upstream 6043 24078248 ~ 24078455 (+)
G115791 NA non-coding upstream 13644 24070281 ~ 24070854 (+)
G115784 NA non-coding upstream 225947 23858216 ~ 23858551 (+)
G115782 NA non-coding upstream 227549 23856683 ~ 23856949 (+)
G115850 NA non-coding downstream 347075 24432855 ~ 24441229 (+)
G115844 LOC107704843,LOC107587884,LOC107732828,LOC107597105,LOC107755451,LOC108443421,LOC107700728 non-coding downstream 357934 24443714 ~ 24445388 (+)
G115857 NA non-coding downstream 360345 24446125 ~ 24447685 (+)
G115861 pkib,LOC107374466,LOC105417165 non-coding downstream 366451 24452231 ~ 24460319 (+)
G116029 NA non-coding downstream 750191 24835971 ~ 24836917 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 262052 23815924 ~ 23822446 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 472105 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 725719 23274989 ~ 23358779 (+)
G115449 NA other upstream 829932 23251382 ~ 23254566 (+)
rps9 rps9,LOC107587787 other upstream 860570 23222050 ~ 23223928 (+)
LOC122360598 NA other downstream 688039 24773819 ~ 24832618 (+)
G116057 NA other downstream 917482 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 1467083 25552863 ~ 25554807 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 1632740 25718520 ~ 25778407 (+)
hmgn2 NA other downstream 2126952 26212732 ~ 26215779 (+)

Expression


Co-expression Network