G116099 (rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561)


Basic Information

Item Value
gene id G116099
gene name rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25552863 ~ 25554807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171398
CCGGCAACAAAATCTGTCAGTTCAAACTAGTGCTCTTGGGGGAGTCTGCTGTGGGGAAGTCAAGTCTAGTCCTTCGTTTTGTAAAAGGACAGTTTCACGAGTTTCAGGAAAGCACAATAGGCGCTGCCTTCTTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCCGGCCAGGAACGCTACCACAGTCTGGCCCCAATGTATTACAGAGGAGCACAGGCTGCCATAGTGGTGTATGACATTACAAATGAAGAATCATTTGCACGTGCAAAAAACTGGGTGAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAgctttggctggaaacaaggcAGACCTTGCCAACAAGAGAGCGCTGGACTTTCAGGATGCACAGTCATATGCAGATGACAACAGTTTGCTCTTTATGGAAACATCGGCAAAGACTTCAATGAACGTGAATGAGATTTTTATGGCCATTGgcaagtttccagcatcattactccagtcttcagtgttacg

Function

symbol description
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
PREDICTED: ras-related protein Rab-5A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171398 True 532 TUCP 0.46 5 25552863 25554807

Neighbor

gene id symbol gene type direction distance location
efhb efhb,LOC107671426,LOC107688256,LOC107743149 coding upstream 240565 25300259 ~ 25312298 (+)
LOC122360523 rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585 coding upstream 339076 25206296 ~ 25213787 (+)
decr1 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding upstream 375004 25172575 ~ 25177859 (+)
col6a4a LOC107704846,LOC107705786,LOC107588488 coding upstream 391217 25136936 ~ 25161646 (+)
sh3bp5b sh3bp5b,LOC107705532,LOC107588490,LOC107755668,LOC107700710,LOC107704986,LOC107556100 coding upstream 446404 25093181 ~ 25106459 (+)
ube2e2 ube2e2,LOC103388353,LOC108256709,LOC103027361,LOC102233395,LOC108243292,LOC103357958,LOC108410980,LOC103477709 coding downstream 120903 25675710 ~ 25698512 (+)
nr1d2a LOC107568872,LOC107688200,LOC107707640,LOC107728981,LOC107671434,LOC107592106 coding downstream 149056 25703863 ~ 25712116 (+)
LOC122360719 NA coding downstream 197458 25752265 ~ 25774002 (+)
LOC122360721 NA coding downstream 221949 25776756 ~ 25778406 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding downstream 342415 25897222 ~ 26069532 (+)
G116101 NA non-coding upstream 229121 25292211 ~ 25323742 (+)
G116120 NA non-coding upstream 243932 25305761 ~ 25308931 (+)
G116082 NA non-coding upstream 467498 25085022 ~ 25085365 (+)
G116072 NA non-coding upstream 482486 25067398 ~ 25070377 (+)
G116048 NA non-coding upstream 662301 24890275 ~ 24890562 (+)
G116136 NA non-coding downstream 146409 25701216 ~ 25701429 (+)
G116137 NA non-coding downstream 146676 25701483 ~ 25702533 (+)
G116143 NA non-coding downstream 176379 25731186 ~ 25731651 (+)
LOC122360700 NA non-coding downstream 227215 25782022 ~ 25788678 (+)
G116293 NA non-coding downstream 418856 25973663 ~ 26074410 (+)
G116057 NA other upstream 495695 25003262 ~ 25057168 (+)
LOC122360598 NA other upstream 720245 24773819 ~ 24832618 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 1730417 23815924 ~ 23822446 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 1940470 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 2194084 23274989 ~ 23358779 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 163713 25718520 ~ 25778407 (+)
hmgn2 NA other downstream 657925 26212732 ~ 26215779 (+)
G116445 ubr5 other downstream 1286573 26841380 ~ 26842025 (+)
G116459 LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165 other downstream 1340631 26895438 ~ 27171468 (+)
cep72 spire1,LOC107677663,LOC107659090,LOC107729800,LOC107565753,LOC107601988 other downstream 1607394 27162201 ~ 27213635 (+)

Expression


Co-expression Network