hmgn2


Basic Information

Item Value
gene id hmgn2
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26212732 ~ 26215779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171760
acagcCGTTATTGTATTTTACGCGAGGCGCTGTGAGGCGTGCGGTGTGTCGTTGCTCGGGAGCACAACCTTTAAAcaaatattctgtttttttgacattttttcgGGGTTTTCTGCAGCCAAGATGCCCAAAAGAAAGattgACGGTGAGAAGGCCGCCAAAGGCAAGGAGGAGccaACAAGACGCTCTGCAAGGTTGTCTGCTAAGCCAGCTCCTCCTAAACCAGAACCAAAGGCCAAAAAAGCCGCCCCCAAGAAGGCAGCCAAGGGGAAGAAGGGCAACCCTGCTGAAAACGGAGACGCCAAGGCAGACCAGGCACAGAAGGTTGACGCTGCTGGCGACGCCAAATGAGAAGCTAACGAGTGTCTGATCCTTCTATGTACTTGGTGACTGTACAGTttgaaataactattttttaCCAAGTTTTATATTAAGAATAACATTTATAGTTGACTTGTTGACTTGCTTTTTATGTACTGATTGATTTGACAGGAGTTactatatttcattcatatccATTTGTATCCCATTTTTTTGAATCAAGTCGTCTGTATCTTTGCCAAAACGGTTTGCCTTCGCTAAATctgttggcaaaaaaaaaaaaaaaaaaaaaaagcaagtgcATTGTCCtaaagttttgttttactgctctatctatctttctttctttcttggttTATCTTTGGATTTTAAACACCAAACATTCTCAAAAGGCAGCTTAAGAGTGTTTGTAAAACGTTTTCGGAAGGCTTTTCACCATGTCGTTAGCATTTAAACGTACAAATACTgtgttttcgtttttatttttttaaaagaagttacAATGAAATTGTCacgaggagaaaaaaaaaaaaaaagtaaataaggcAACAATGTTGAATAAATTTACAATGTGAACCTTCGATTTCTTTAGAGCTGTGTGTTCTGAgcttgtcttgttttattaagTTATGTTCTGCAACCGTGGAAGGATATTCAGTGACTcttaaaatgctttgttttaaatggttttgaataaaaaaataaataaactgtccagaaaaaaaaaaa
>TU171761
acagcCGTTATTGTATTTTACGCGAGGCGCTGTGAGGCGTGCGGTGTGTCGTTGCTCGGGAGCACAACCTTTAAAcaaatattctgtttttttgacattttttcgGGGTTTTCTGCAGCCAAGATGCCCAAAAGAAAGattgACGGTGAGAAGGCCGCCAAAGGCAAGGAGGAGccaACAAGACGCTCTGCAAGGTTGTCTGCTAAGCCAGCTCCTCCTAAACCAGAACCAAAGGCCAAAAAAGCCGCCCCCAAGAAGGCAGCCAAGGGGAAGAAGGGCAACCCTGCTGAAAACGGAGACGCCAAGGCAGACCAGGCACAGAAGGTTGACGCTGCTGGCGACGCCAAATGAGAAGCTAACGAGTGTCTGATCCTTCTATGTACTTGGTGACTGTACAGTttgaaataactattttttaCCAAGTTTTATATTAAGAATAACATTTATAGTTGACTTGTTGACTTGCTTTTTATGTACTGATTGATTTGACAGGAGTTactatatttcattcatatccATTTGTATCCCATTTTTTTGAATCAAGTCGTCTGTATCTTTGCcaaaaaaaaaaaaaaaaaaaaaaagcaagtgcATTGTCCtaaagttttgttttactgctctatctatctttctttctttcttggttTATCTTTGGATTTTAAACACCAAACATTCTCAAAAGGCAGCTTAAGAGTGTTTGTAAAACGTTTTCGGAAGGCTTTTCACCATGTCGTTAGCATTTAAACGTACAAATACTgtgttttcgtttttatttttttaaaagaagttacAATGAAATTGTCacgaggagaaaaaaaaaaaaaaagtaaataaggcAACAATGTTGAATAAATTTACAATGTGAACCTTCGATTTCTTTAGAGCTGTGTGTTCTGAgcttgtcttgttttattaagTTATGTTCTGCAACCGTGGAAGGATATTCAGTGACTcttaaaatgctttgttttaaatggttttgaataaaaaaataaataaactgtccagaaaaaaaaaaa
>XM_043261900.1
TCGCTGCACGGGATATGCAAAATCTGGTTTAAACCGGTTTCTATCttaaatttcaatataaaaacttaataaaacatatacagcCGTTATTGTATTTTACGCGAGGCGCTGTGAGGCGTGCGGTGTGTCGTTGCTCGGGAGCACAACCTTTAAAcaaatattctgtttttttgacattttttcgGGGTTTTCTGCAGCCAAGATGCCCAAAAGAAAGattgACGGTGAGAAGGCCGCCAAAGGCAAGGAGGAGccaACAAGACGCTCTGCAAGGTTGTCTGCTAAGCCAGCTCCTCCTAAACCAGAACCAAAGGCCAAAAAAGCCGCCCCCAAGAAGGCAGCCAAGGGGAAGAAGGGCAACCCTGCTGAAAACGGAGACGCCAAGGCAGACCAGGCACAGAAGGTTGACGCTGCTGGCGACGCCAAATGAGAAGCTAACGAGTGTCTGATCCTTCTATGTACTTGGTGACTGTACAGTttgaaataactattttttaCCAAGTTTTATATTAAGAATAACATTTATAGTTGACTTGTTGACTTGCTTTTTATGTACTGATTGATTTGACAGGAGTTactatatttcattcatatccATTTGTATCCCATTTTTTTGAATCAAGTCGTCTGTATCTTTGCCAAAACGGTTTGCCTTCGCTAAATctgttggcaaaaaaaaaaaaaaaaaaaaaaagcaagtgcATTGTCCtaaagttttgttttactgctctatctatctttctttctttcttggttTATCTTTGGATTTTAAACACCAAACATTCTCAAAAGGCAGCTTAAGAGTGTTTGTAAAACGTTTTCGGAAGGCTTTTCACCATGTCGTTAGCATTTAAACGTACAAATACTgtgttttcgtttttatttttttaaaagaagttacAATGAAATTGTCacgaggagaaaaaaaaaaaaaaagtaaataaggcAACAATGTTGAATAAATTTACAATGTGAACCTTCGATTTCTTTAGAGCTGTGTGTTCTGAgcttgtcttgttttattaagTTATGTTCTGCAACCGTGGAAGGATATTCAGTGACTcttaaaatgctttgttttaaatggttttgaataaaaaaataaataaactgtccagaaaaaaaaaaa

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU171760 False 1050 TUCP 0.38 6 26212811 26215779
TU171761 False 1019 TUCP 0.37 7 26212811 26215779
XM_043261900.1 True 1129 mRNA 0.37 6 26212732 26215779

Neighbor

gene id symbol gene type direction distance location
dhdds dhdds,LOC107688271,LOC107671399,LOC106582847 coding upstream 1329 26205490 ~ 26211403 (+)
si:dkeyp-97a10.2 LOC107688197,LOC107568877 coding upstream 81925 26125376 ~ 26130807 (+)
LOC122360056 LOC107671413,LOC107733030,LOC107568859 coding upstream 87482 26120860 ~ 26125250 (+)
iglon5 iglon5,zgc:110372,LOC107671460,LOC107707642,LOC107733024,LOC106582734 coding upstream 143200 25897222 ~ 26069532 (+)
LOC122360721 NA coding upstream 434326 25776756 ~ 25778406 (+)
LOC122360074 LOC107564102,LOC107688192,LOC107707652,LOC107552518,LOC107671417,LOC107726713,LOC107564101 coding downstream 62637 26278416 ~ 26282550 (+)
slc9a1a slc9a1,LOC107688187,LOC107564092,LOC107671463,LOC107552533 coding downstream 125174 26340953 ~ 26384190 (+)
LOC122360976 man1c1,LOC107564091,LOC101882461,LOC108426368,LOC106605146,LOC105006133 coding downstream 173174 26388953 ~ 26678906 (+)
ifnlr1 NA coding downstream 510446 26726225 ~ 26738713 (+)
myom3 LOC107729819,LOC107665907 coding downstream 529223 26745002 ~ 26807764 (+)
G116300 NA non-coding upstream 34493 26105018 ~ 26178239 (+)
G116293 NA non-coding upstream 138322 25973663 ~ 26074410 (+)
G116294 NA non-coding upstream 139455 26069855 ~ 26073277 (+)
LOC122360700 NA non-coding upstream 424054 25782022 ~ 25788678 (+)
G116143 NA non-coding upstream 481081 25731186 ~ 25731651 (+)
LOC122359920 NA non-coding downstream 1154 26216933 ~ 26226095 (+)
G116330 LOC107719312,LOC107671449,LOC107552529,LOC107552511,LOC107552527,LOC107671451,LOC107671448 non-coding downstream 25058 26240837 ~ 26260495 (+)
G116392 NA non-coding downstream 82726 26298505 ~ 26299351 (+)
G116401 NA non-coding downstream 169832 26385611 ~ 26385848 (+)
G116402 NA non-coding downstream 171019 26386798 ~ 26387195 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other upstream 434325 25718520 ~ 25778407 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other upstream 657925 25552863 ~ 25554807 (+)
G116057 NA other upstream 1155564 25003262 ~ 25057168 (+)
LOC122360598 NA other upstream 1380114 24773819 ~ 24832618 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 2390286 23815924 ~ 23822446 (+)
G116445 ubr5 other downstream 625601 26841380 ~ 26842025 (+)
G116459 LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165 other downstream 679659 26895438 ~ 27171468 (+)
cep72 spire1,LOC107677663,LOC107659090,LOC107729800,LOC107565753,LOC107601988 other downstream 946422 27162201 ~ 27213635 (+)
G116460 NA other downstream 948057 27163836 ~ 27168738 (+)
kif13a kif13a,LOC107677640,LOC107601961 other downstream 1192298 27408077 ~ 27463052 (+)

Expression


Co-expression Network