G116459 (LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165)


Basic Information

Item Value
gene id G116459
gene name LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26895438 ~ 27171468 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171967
ACTGGAGTGTCATTATGAATATCAAATCCTAAGACGGATCCCTAGTGAAGCGTGTAGTTAAAACTAGCGGGTGATCGTCGCGTCGTCTCGTTCACGTCGAAATCAGCAGCCATGACCGAGTTCTGGTTGATCTCTGCTCCTGGGAGAAGACCTGCCAGCAGGCGTGGGACAAACTAATGGCAGCCCACGACTTCGCACCAACAACCTCTCCACCAACAACAAGTTCAACATTCCCGATCTCAAGGTCGGGACATTAGATGTCCTGGTGGGGCTGTGTCGGATGAGCTGGCCAAGCTGGGCGCTTTTGTCGAGAGCGTGGTGAAGAAGGTGGCTCAGTACATGGCCGGCGTGTTGGAGGACAGTCGAGATAAAGTCAGGAGAACCTGCTGGCCAGCGGAGTCGATCTGGTCACTTATGTCACGAGATTTCAGTGGGACATGGCCAAGTACCCTATCAAACAATCCTTGAAGAACATTTCGGAGATCGTCTCCAAGCAAGTCTCACAGATCGACAATGACCTGAAGGCCCGGGCGTCGGCCTACAACAACCTGAAGGGAAACCTACAGAATCTAGAGAGGAAGAACGCAGGGAGCCTGCTGACCAGGAGTTTGGCAGACATCGTCAAGAAAGACGACTTTGTGCTCGATTCTGAATACCTCATTACTATGCTGGTCGTGGTACCAAAAACAAACTACACCGAGTGGCAGCGCACTTACGAGACTCTGGCAGAAATGGTGGTGCCGCGATCTACGAAGTAAGAAACTTACTCCAGTTTTCATGCATATCAAAAGGAATCGTGCGGCGTTTTGcacttgttcattttaatagctTCATATAGGTGTTGTCTATTTTAAAAGGTGTTGCTAAAAACAACGAGAACAACAACACAATATATGGGACTCGGTGGGGGCTGACGTATAAAAGGGTTTGCTGGAAACGGCTGGTATTGGGCAGATCGATGTGTCTGGCTGAGAACAACACGTTTAGGACCTAACTAGACTAATAAGTGGCGTGCTGGTTACTTAGGAAGCCGATGAACTAATACAGCTGAACAAACA

Function

NR:

description
V-type proton ATPase subunit C 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171967 True 1058 TUCP 0.49 8 26895438 27171468

Neighbor

gene id symbol gene type direction distance location
klf10 LOC107724995 coding upstream 16827 26871879 ~ 26878611 (+)
srsf10a srsf10a,srsf10b,LOC107724996,LOC107677658,LOC107601991,LOC107659087,LOC107729809 coding upstream 74221 26813702 ~ 26821217 (+)
fabp10a fabp10a,LOC107677662,LOC107601978,LOC107659084,LOC103026354 coding upstream 83242 26810797 ~ 26812196 (+)
myom3 LOC107729819,LOC107665907 coding upstream 87674 26745002 ~ 26807764 (+)
ifnlr1 NA coding upstream 156725 26726225 ~ 26738713 (+)
trip13 trip13,LOC107754445,LOC107677654,LOC107659068 coding downstream 86512 27257980 ~ 27265824 (+)
nkd2b LOC107754446 coding downstream 97514 27268982 ~ 27306063 (+)
zgc:158766 plekhg4b,LOC107569053,LOC107677642,LOC107729805,LOC107659069,LOC107601962,LOC107601963 coding downstream 155706 27327174 ~ 27376080 (+)
LOC122359878 LOC107729808,LOC107707118,LOC107677656 coding downstream 210325 27381793 ~ 27385512 (+)
ptdss1a ptdss1a,LOC107601986,LOC107677659,LOC106517773 coding downstream 214326 27385794 ~ 27400646 (+)
G116456 NA non-coding upstream 8874 26885461 ~ 26886564 (+)
G116437 NA non-coding upstream 66569 26828089 ~ 26828869 (+)
G116407 NA non-coding upstream 413624 26421704 ~ 26481814 (+)
G116403 NA non-coding upstream 507972 26387216 ~ 26387466 (+)
G116402 NA non-coding upstream 508243 26386798 ~ 26387195 (+)
G116482 NA non-coding downstream 58325 27229793 ~ 27231818 (+)
G116487 NA non-coding downstream 67611 27239079 ~ 27240170 (+)
G116488 NA non-coding downstream 69131 27240599 ~ 27241127 (+)
G116489 NA non-coding downstream 70026 27241494 ~ 27243089 (+)
G116492 NA non-coding downstream 77074 27248542 ~ 27307556 (+)
G116445 ubr5 other upstream 53413 26841380 ~ 26842025 (+)
hmgn2 NA other upstream 679659 26212732 ~ 26215779 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other upstream 1117031 25718520 ~ 25778407 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other upstream 1340631 25552863 ~ 25554807 (+)
G116057 NA other upstream 1838270 25003262 ~ 25057168 (+)
kif13a kif13a,LOC107677640,LOC107601961 other downstream 236609 27408077 ~ 27463052 (+)
G116572 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422 other downstream 661072 27832540 ~ 27840240 (+)

Expression


Co-expression Network