rspo1 (rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686)


Basic Information

Item Value
gene id rspo1
gene name rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24134883 ~ 24154422 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260043.1
TCCGCAATGATTTGGATGCTGTCCGGAGTTTAAAAGTGGATTTATGTGGGACTTGCTTCAGAATTACGACAGAGAACCGCAAAATAAACCAGGCCTCTGTCGTCTCCATTATAAACGCAGTTCAGTGGAATTAGGGGATTTATCCATGGGATTTTctatttaaagtcttttttttttgtttcttttcctttctcccATGCCCACTATTGCTCAGATTACGCACTGGGACACTGATGTAAACTGTCATGACATTTTAACCGAAGTCAAAGCAAGTCAAGAAGCGCTTGTCCCATAATAATCCCAGTAGGCAGTCTGTTGGTCAGCCGCTGGTGTCTGCTAGCAGCGCGAGGAGAAGCCCGTATTACAGACACATTTAGAGCCTCGCGCTCAGTGGATCAATAGGAAGCTCGCGATACATAGTAGCAGATTTTGGCACTGACGGATGCGTTGTCACGCGTAGGAGTCCAGAacctctctccatctctctcgttttttttttttttcggcactccccctcctcctcccaGCATCCCTAATAAGACACATGCTCCTGGGCTGGGTTGCTCACTCACGTTAGGATCTCCTGGCTGCGACCGCCGCGAGCTTCTCTCTCCTCTCGGTTTGGCCCCCGGCTTCATGGGTTGAAGGGTAGTTCGCGTTGTCCACAAGATCTCATCACTCCTCTCGCCCGGCTCTCTGTACCCAGAACTTCACCGTTCCCATCTTCATCCTCGCGAGTGCTATGGTTTGTTCTCTGAACATGTACGGACTTGCAGCGGCAGAGGCCTTCAGCCAAGGGCGTCGCGACCGGCTGTAGTCGACTTCGTTCCACCTGCCACAGCGTGAAAGGGGCCCCCTCAGCTGTGATCTGTCTGCCTGCAGGCGGGACCCAGCGTGACTGGGCAGCAGGGACTATGCATTTGGGACTGGTGGCGCTGGCAGTTATCTTCCTCGGCTCCATGGGTCACGGCGATAACCTCAAGGCCTCCAAAGCAAGAAGACAGAGACGAATAAGCACTGAAGTACCACCATCGTGCTCGAATGGCTGTGAACACTGCTCAGAGTACAACGGCTGTCTTAAATGTCGACCCCGGCTCTTCATCCTACTGGAGCGGAATGACATCCGTCAGATAGGCATTTGCCTCGCTGCCTGTCCTGTTGGATATTACGGCATTCGAAATCGTGATATGAACAAATGCACACaatgtaaaatagaaaactgtgaGGCATGTTTTAGCCGAAACTTTTGCACAAAATGTAAGGAGGGCCTGTACTCACACAGAGGGCGGTGTTTCTCCAGCTGTCCTGAAGGATTCACCGTCAATGGCACCATGGAGTGTGTAGTCCAATGTGATCTAAGTGAGTGGAGTCCATGGGGCCCTtgcatgaagaaaaacaaaacatgtggCTTTAAAAAGGGTAACCAGACCCGTACCAGGGAGCCCTTACAGCTTCCAAGTCCTGCCACTTCCACAGGGGCCTCTCCACCCTCGGGCTGCGTCCCAGAGACACAGACCCAAAGATGTACCGTGCAGAAAAAGATCCCTTGCAAAGgAGAAACTAAGAAGAATCCGCAAAACCGCGGAGAGAAAAACGTCAAGAATCGTGGACGGGACTCCAAAGAAAGTGGCAAAGGGggcaacaagaaaaaaaagaccccGAACCGGTCCACCACTGTCGCCACTATTACAACGAGCATGGTGACCTAATCTTATGGTGGTGTCAGGTGGGCCTAAGAAAGGAGAACGACTGGCCCATCTTCATCGGCTGAAGACAAACCGTTTTTGATTGTGACAATATCAAAGTtatgcaaaaaaggaaaaaaaggaataacGCTGCTACACGTTAAACATGCTCAATGAGAACTGGAGGATTGCTGTACTGAATAATGAATTGTGTGAACTGAGTGAAGTTTGAGGGAACCAAGGAGCTAGGTTGGTTAGTCTCATGCTATTTGGAAGCATCCAGAAAGACTGTGCGCTGTGCGTGTGCAGGGTCATCTTTTTGTAAGCCTTCCCACAGGAAACAACATTGTTTGTGGTTGGCGAAATGTTCCATATGTTCCTCTTTAGACCTATTGGAAAGGCTTCTGAACTATAGACATCACTGCAAATGAGGCCCACCGTCCTAACATTGCTTAAAGAACATCTAAAATACATTAGAATCTCTTGTGGTTCACCTAATCCAGCTGTAATCACATTCTTTTTCTCCAGAGTTGGATCTCCTTATGTTCGTGACAGGTAGCAAACAGTCTGGAGTCTGTCTGTGAGTCTGTCTCagagtgaattttttttttctttttttttttttttaagtgctttttatatcttgtttttttctgttgtttataACAAAAGAAGGCACTGGAACTGATATTGTGGTTTACAGAGAGAATGTGGAGAAAGAAGAACTTTAACGATGAAGAAACTATccaaaaatgatgcaaaaaaagtattattatatatctaGAGACAAAGCACTTATGACTTACAACTGATGGGGtggtttatgtaaaataaaagtcttgcGATTAGGgggaaataaatacagtattttctgCACAGAAGAAGGCAGCAATAATATGAGGAATGTACAGTGTTGAAGTATGTATATGAAAgattttgtctctgtgtgtgtgtgtgtgtgtcaaatgtgttgtgtgtttttaaatccGTGTTCTTGTGTGCACCTTTATGTTGTGAAgtgagggggagagagaggTCAGCAGAAACCTACAGTACACTTTGTGTGACCAAGCCATTGAGGAACTAAACCAGCATAATGCTTAAATCGCATTGATTATATGTCTTGTAGGTTTTTCATTGCTCAGTTATCATggttcaaataaatacaatatatcaCATCATTCATAATGCTTTGCAACATACAGTATCAATATCTGTGGAAGTAATGCTGTACATCATACAGTTATCTACATGTAGCATCCAGTCACACTTTTCTTAGTCTGATTGCCTTCCATAGCTTGCTGACCGGGCCGCATTTTCCAAAAGCAAAAGTAGATTGTAGAGACCACCGGTGCTAATGGTTTTTATGATCTATAGGCTtacgatgcttttgggaaatgcaacCCCCGATCAGTGGGTGTTCACCATATACACCCAGAGTGACACTGAAAATGTCAGCTTCCGTTAATCTCGATGCAATAtacttattgttattgtatatcTATTTCTATAAAAGTCTTCAAGGTaaataaacatctaaataaacaTCGGTTGCAGTTtctaaa

Function

symbol description
rspo1 Predicted to enable G protein-coupled receptor binding activity and heparin binding activity. Acts upstream of or within angiogenesis; hematopoietic stem cell differentiation; and vascular endothelial growth factor receptor signaling pathway. Located in Golgi apparatus and cytosol. Is expressed in several structures, including nervous system; regenerating fin; reproductive system; steroid hormone secreting cell; and tail bud. Orthologous to human RSPO1 (R-spondin 1).

NR:

description
R-spondin-1-like

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0008201 heparin binding molecular_function

KEGG:

id description
K19471 RSPO1; R-spondin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260043.1 True 3250 mRNA 0.45 6 24134883 24154422

Neighbor

gene id symbol gene type direction distance location
utp11 utp11,utp11l coding downstream 47544 24084487 ~ 24087339 (-)
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding downstream 319094 23811951 ~ 23815789 (-)
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding downstream 323208 23789106 ~ 23811675 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding downstream 347181 23752336 ~ 23787702 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding downstream 398246 23676990 ~ 23736637 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding upstream 42275 24196697 ~ 24198654 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding upstream 157067 24311489 ~ 24316132 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding upstream 217681 24372103 ~ 24430886 (-)
ptprub ptprub coding upstream 472172 24626594 ~ 24808670 (-)
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding upstream 681664 24836086 ~ 24839787 (-)
G115939 NA non-coding downstream 57016 24077631 ~ 24077867 (-)
LOC122359981 NA non-coding downstream 77621 24044760 ~ 24057262 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding downstream 312595 23820519 ~ 23822288 (-)
G115911 NA non-coding downstream 317783 23816900 ~ 23817100 (-)
G115910 NA non-coding downstream 318726 23815897 ~ 23816157 (-)
G115954 NA non-coding upstream 33515 24187937 ~ 24188594 (-)
G116174 NA non-coding upstream 667079 24821501 ~ 24823410 (-)
G116179 rab42 non-coding upstream 679114 24833536 ~ 24833958 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding upstream 680677 24835099 ~ 24835364 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 924845 25079267 ~ 25082596 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 459538 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 525042 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 610501 23519808 ~ 23524382 (-)
G115554 NA other downstream 1200916 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 1233696 22892102 ~ 22901187 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 163060 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 210218 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 259804 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1510297 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2225250 26379672 ~ 26384187 (-)

Expression


Co-expression Network