ndrg1b (ndrg1b)


Basic Information

Item Value
gene id ndrg1b
gene name ndrg1b
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18592268 ~ 18596824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260125.1
CAAGGGGATATAAAACGCAGACCTCAGTGCATTCTGTGCAACTCGGAGCTTGAGGCAGCAGCAAACCAGGATCTACGCTTTTCAAATATACACATTTCCTGCCTATACATCAGCTGTCAACAGCAACTGTAACCATGGTTCTTGAGGACTCTGATTGCAGCGTCTTTGAGCTTGACATCACTGAGGATGATGTGGAGACTGCCTTTGGTCTGGTGCACTGCACCATGATGGGTGTCCCGAAGGGTAACCGGCCTACCATCCTGACCTTCCATGACATCGGACTGAACAACAAGAGCTGTTTCGAGTCTCTCTTTAATCACAAAGACATGCATGAGATCATGCAACACTTTGCTGTGTGCCATGTTGACGCCCCAGGACAGCAGGAGGGTGCCAGCACGCTCTCCACAGAGTATACCTATCCATCTATGGATCAGCTCTCAGAAACCCTTCCTATGGTCCTCCAGCATTTTAGTCTGAAGAGTGTGATTGGAATGGGGGTTGGAGCCGGAGCCAACATCCTGACTCGCTTTGCTCTAAAACATCCAGACATGGTTGAAGGTCTTGTTCTGATTAATTTAAGCGCACAAGGAGAGGGTTTCATGGAAAGGGCGGcacaaaagATCACAAGCTGGACTCATGCTGTCCCTGATACAGTCATTTCACACCTGTTTGGAAAGGAGGAAATACAGAACAATCATGAACTGATCGCGACCTTCCGTCATCTCATTTCAAACAACATTAACCAATCCAACCTGCAGCAGTTTGTCAAATCCTACAAAAGCCGAAGAAATCTGGAGATCGAGAGACCAATACAAGGAGGAAACGCAAACACAAGAACGCTGCAGTGTCCAGCTTTGCTGATAGTGGGTGATAACTCTCCAGCTGTGGATGCTGTGGTTGACAGCAACTCCAGAATGAACCCAACAACGACGACATTTCTCAAGaTGGCTGACTGTGGAGGCCTGCCTCAGGCTGatcagCCTGGCAAGCTAATAGAAGCTTTCAAGTATTTTATCCAGGGAATGGGCTACATGCCCTCTGCCAGCATGACCCGTCTTGCTCGGTCTCGCACGGCCAGTAGCTCATCTCTGGAGCGAAACCGTAACCGCGCGAACACGGACGAACGGCGCGGACGCTCCCACACCGACGTCTCCATGGAGAGCGCTCACGGCGCGGAGCACACTTCCTCAGGCCCTACACATTCCGTCGAGCTGTCCTGCTGAACGCCTAGTGAAAATAACACCACCGTGCAAACCAGAACGGAACTCAGCAGGCGGTTTCATATTGGacctgaaatataatataaacctGAAAGCTGATGTTCCTGTAATTAGATGATGTTTAATGTATCATTGGCATTTTTCACAAGGGACATGAGATTAGAAGTTATACAATAAGTAAACCAGGTTTAAGTGACCGttttattactaaaatgtacagtgtgtaatgttataaaatgacGTTAAGAAGGTTCTATGATGTTTACCGCTTGGCTGTGAGAATTTATAACATGTGCGTGATTGTGTTCGGGTTCTCTGATAGGGCTGAATGCTTGggggatatttttttattacattatgtattGCATATAATTTCTGTACTTTACAAATTTACATCTGAGAGTATATTCTTAGTGTGACAACATCACTGAATCAGTTTAAGTGGTTGTGATCCTTACAGTCCTACCTTATATAATGAGCCAGGAAGATATGAATGTTGGTAAGATCACTTTATTTAACtgtattcttaaaataaaattaagtat

Function

symbol description
ndrg1b Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be active in cytoplasm. Is expressed in epiphysis; optic vesicle; pro-T cell; retina; and thymus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4D. Orthologous to human NDRG1 (N-myc downstream regulated 1).

NR:

description
PREDICTED: protein NDRG1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260125.1 True 1765 mRNA 0.45 14 18592268 18596824

Neighbor

gene id symbol gene type direction distance location
scxb scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100 coding upstream 49631 18539263 ~ 18542637 (+)
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding upstream 352943 18232044 ~ 18239325 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding upstream 370332 18221031 ~ 18221936 (+)
pear1 pear1,LOC107741736,LOC107587815,LOC107704888,LOC107671660,LOC107597999,LOC107732476 coding upstream 397458 18160023 ~ 18194810 (+)
tmem79b tmem79b,LOC107741741,LOC107704887,LOC107587819,LOC107732471,LOC107597995 coding upstream 448289 18139916 ~ 18143979 (+)
LOC122360632 LOC107672171,LOC107552811,LOC107724789 coding downstream 12158 18608982 ~ 18612472 (+)
LOC122360004 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding downstream 75135 18671959 ~ 18673711 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding downstream 86495 18683319 ~ 18684515 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding downstream 107579 18704403 ~ 18751686 (+)
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding downstream 165440 18762264 ~ 18779383 (+)
G114104 NA non-coding upstream 30357 18561280 ~ 18561911 (+)
G114103 NA non-coding upstream 31299 18560214 ~ 18560969 (+)
G113988 NA non-coding upstream 214627 18320745 ~ 18377641 (+)
G113969 NA non-coding upstream 307504 18284154 ~ 18284764 (+)
G113954 lmna,LOC107741735,LOC107587813,LOC107704890,LOC107598000,LOC107671682,LOC107723101 non-coding upstream 391839 18199250 ~ 18200429 (+)
LOC122360728 NA non-coding downstream 53949 18650773 ~ 18653605 (+)
G114172 NA non-coding downstream 67004 18663828 ~ 18664762 (+)
G114175 NA non-coding downstream 71021 18667845 ~ 18669187 (+)
G114132 NA non-coding downstream 169794 18766618 ~ 18888286 (+)
LOC122360693 NA non-coding downstream 224693 18821517 ~ 18825388 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 744858 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 854786 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 1185072 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 1680387 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1768285 16767060 ~ 16823983 (+)
G114131 NA other downstream 51721 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 78736 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 161481 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 211920 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 230430 18827254 ~ 18841584 (+)

Expression


Co-expression Network