si:dkey-29b11.3 (LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280)


Basic Information

Item Value
gene id si:dkey-29b11.3
gene name LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21651508 ~ 21654059 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260131.1
TCAGAAAAGTATCTACTGCTCAACTTGTAATGTATCCACTTTCATCGCCGTTACAGCATGACAACCATCCTCAAGAAGCCAAACAAAGGCGTGAAGCATGCTGAAAACTAGAGCCTTCCTGTGAGCCAAAGGTCACCATGGAGACAGAAGCAGCACCTGCGCAGCCTAATGACGACAGGGCGGAGACCTGCACCGTATCCGTCAAGGGTCTGACAGAAAACTGGCAGAAATGGTCCAACGACCGCTGCGAGTATCAGAAACAAAATCCCTTTAGCAACGGCAAGCTGATTCCACCGCAGATCCAGCGAGGACAGGAGGGCTACGGCAGGCCTTTAGAGGGCTCCAAAACCGAGCAGAGAGGAAAAGACGCCCACTCTCACATCAGCAGAGAGGTCACCGAGCTCTGCCAGGTCATCAGGGAGATCGGAGAGAGCGGGGGTGAGAGCAGGGTGTGTGTGCGGTTCGGGAGGCTGTTTGAGAGATACGTCACCATCTCTAATAAACTGGTGGGAGTTCTGCTGCGAGCACGCAAGCAAGGGCTGGTGCACTTTGAAGGAGAGATGCTGTGGCAGGGAAGAGATGATGAAGTGCTCATCACCTTGTTGCAGTGATGGACACCATGTGCCTGTCTGTCCAACATTGCTTTATAGACATCCGTTTTACTTGAACGTGAGTTAGGAGTCAGTTGTCGGCCAAAGAAACTTATGCTAATGAGATTTAAACTGAGCGTATTGAATTCAAATGTAGCAATGTTgtatactgttatttttttttccccccaagtATCAccaaaaaagaatttaaaaaaattacaattacaaacaaaattCGAAACGGTCTGGTTTATCATTGGTCAAAATGACAGGTAGCCCCACCCCCTCCCATACCATCTCTTAAGTCGGTGTTGCTTTTAGGTGCtgctaaaaatactttttacgTGTTCGtgctttaaaacatcttaaactAGTCTGAAAAAGGTTTGCTGTTCTTAGTTGGGTCTACTAACCTAGTTAGGCTGGTCTGTTTACTGGTTTTAGAGGTACTTTaaagaaatctaaaattaataatttgctcaggccatccaaaatgtagataTCGCTTCTTCAGCGGAACACATTTGAAGAAATGCAGTGTTACATCACTTCCTCGCTAATGAGTCCttggcagtgaatgggtgctgtcaggGAGAATTGATGGACCGGAGTCGTGTTGATTACTTGTGagttattgtgatgcttttgtctgtcattttgacggcacccattcactgtagaggatACATTAGTGAGCAAATAATGTGATGTTAATGGCCTAtaggtaagaaaaaaataatttttcagtgAACTTTTTAATTAAGCAGTTTTTTTACAACCTACAAAATGACTTTATTCTGCTATTATTATCTCTGCACAATGATTTATCCTCAGAAATTACACTCATTTACCTTTAAGTGAACAATAACAGTGCAACATTTTAGTCTTATTCTCAAACCATAATCACATTAATA

Function

NR:

description
PREDICTED: actin-binding Rho-activating protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260131.1 True 1507 mRNA 0.43 2 21651508 21654059

Neighbor

gene id symbol gene type direction distance location
LOC122360960 NA coding upstream 245684 21392842 ~ 21405824 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding upstream 272666 21365339 ~ 21378842 (+)
ndufaf6 ndufaf6,LOC107717382,LOC107591959 coding upstream 296892 21346657 ~ 21354616 (+)
si:dkey-22o22.2 si:dkey-22o22.2,LOC107666790,LOC107717379,LOC107668308,LOC107592533,LOC107713796,LOC107600533,LOC108437325,LOC108272818 coding upstream 337054 21210852 ~ 21314454 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107717377,LOC107666889,LOC107668317,LOC107713815 coding upstream 494459 21147757 ~ 21157049 (+)
rbms3 rbms3,LOC107730162,LOC107668303,LOC107713827,LOC108434201 coding downstream 49665 21703724 ~ 21822473 (+)
gpd1l gpd1l,LOC107600618,LOC107705153,LOC107666803,LOC107551192,LOC107713825,LOC108434205,LOC103034694 coding downstream 308161 21962220 ~ 21968547 (+)
tmem42a si:dkey-99n20.7,LOC107705805,LOC107666806,LOC107600663 coding downstream 317163 21971222 ~ 21972500 (+)
ebag9 ebag9,LOC107666870,LOC107705161,LOC107600620,LOC107679646,LOC107713822,LOC107551191 coding downstream 329831 21983890 ~ 21989916 (+)
gdf6a gdf6a,LOC107705204,LOC107600621,LOC107666829,LOC107551190,LOC107679643,LOC107713806 coding downstream 350176 22004235 ~ 22010159 (+)
G115074 NA non-coding upstream 260346 21390781 ~ 21391162 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding upstream 482155 21167994 ~ 21169353 (+)
G114983 NA non-coding upstream 509478 21141042 ~ 21142030 (+)
trnae-cuc_37 NA non-coding upstream 512556 21138881 ~ 21138952 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding upstream 519403 21129128 ~ 21132105 (+)
G115134 NA non-coding downstream 39435 21693494 ~ 21694544 (+)
G115157 NA non-coding downstream 174157 21828216 ~ 21829531 (+)
G115200 NA non-coding downstream 342951 21997010 ~ 22001617 (+)
G115288 NA non-coding downstream 873098 22527157 ~ 22530262 (+)
G115342 NA non-coding downstream 1113442 22767501 ~ 22768460 (+)
siglec15l NA other upstream 881116 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 1346824 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 1424431 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 2003702 19643829 ~ 19647806 (+)
G114382 NA other upstream 2322745 19327104 ~ 19328763 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 195930 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 229850 21883909 ~ 21921531 (+)
G115193 NA other downstream 323058 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 1255476 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 1310510 22964569 ~ 22975774 (+)

Expression


Co-expression Network