pou3f2b (pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690)


Basic Information

Item Value
gene id pou3f2b
gene name pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23520144 ~ 23523276 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260181.1
tttaataCTCCGTAAAATCCGTAAAGTTGACTCTCCAAATACTTTTAAGCAAACATCACGCTAGAAAGATCCGATAGTTCCccttattttgataaataatcCCCAAACCTGTAatcaataaatatgaaatgacatcacataaaatagttttcatttattgcataCATTCTATTGAACaagacacatacatacatacatatgtaacgCACACGAAAGCGAAATCGAAATCAAATTACATAACAGACAAGTTTGAAATGAATTCTCCCGAAGTTATAAAAAGCATAACCTTTGATGTTCTTCGCTCCGGTCTTGGTGGCCCGTCGGTCCCTCACATTTCAGAGGTGCTGCAGGACACGGAGTTCTTTTGAGGGAAAGAGGCAGTGTTTGTTAAGACTTTCGAGCGTCCAATGAACTAAAGGCTGCCTCCAAAAAAACGCGTCCATCATCCCTTTCCACCCAATGAGCGTCGTCGGGGGGCGGAGCTCAGGTGCGCGCCGCTGCGTCCACTTGGCAAAGAGCCTGGGAGACGCCTGTGGCAAAAGAGTAACTGTCAAATGCAAGGTTCCTTTAATAGGAGCGATCAGTCCGGCTCCGAGAGTCATGGCGACTACAGCATCCAATCATTACAATATCCTCACCTCCAGCCCATCTATTGTACACTCGGAGCCTGGGAGCATGCAGCAAGCCACGGCTTACAGGGACGCGCAAACCCTGTTGCAGAGTGACTACTCGCTGCAGAGCAACAGTCACCCGCTCAGCCACGCGCACCAGTGGATAACAGCCTTGTCACACGGAGAAGGAGGTCCGTGGTCGTCCAGTCCCCTCGGCGAGCAGGACATCAAGCCAGCGGTGCAGAGCTCCCGGGACGAGATGCACAATTCCAGCAATCTACAGCATCAGACGCGGCCACCCCATCTGGTACATCAGACGCACGGGAATCATCACGATTCAAGGGCATGGAGAACGACGACGGCGGCTCACATCCCCAGCATGGCCACGTCGAACGGACAGAGCCTTATTTACTCGCAGCCCGGCTTCAGCGTGAACGGTCTCATCCCAGGTAGCGGCCAGGGCATCCACCACCACAGCATGCGCGACGCGCACGAGGACCACCACAGCCCACACCTCAGCGACCACGGCCATCCACCGTCCCAGCACCAGCACCAGCCGCACCAGAGCCACCACGACCACTCGGACGAGGACACGCCGACCTCGGACGACTTGGAGCAGTTCGCCAAACAGTTCAAGCAGCGCAGGATCAAGCTGGGCTTCACGCAGGCGGACGTCGGACTAGCTTTGGGAACGCTCTATGGAAATGTGTTTTCGCAGACCACGATATGCAGGTTTGAGGCCCTGCAGCTCAGCTTCAAAAACATGTGCAAGCTCAAGCCTTTGTTGAACAAGTGGTTGGAGGAGGCGGACTCCACATCTGGCAGCCCCACGAGCTTGGACAAGATAGCTGCGCAGGGGAGGAAACGGAAAAAGAGGACTTCCATCGAGGTAAGCGTCAAAGGGGCTTTGGAGAGCCATTTCCTTAAGTGCCCAAAGCCAGCCGCGTCGGAAATTACTTCGCTGGCGGACAGTCTGCAGTTGGAAAAAGAGGTAGTGAGGGTTTGGTTTTGTaacagaagacagaaagagaaacggATGACTCCTCCCGGCGGACCTCTGCCGGGTACCGAGGACGTATACGGAGACACGCCGCCGCATCACGGGGTTCAGACGCCAGTTCAGTgagacaagacaaaaacaagacGAAAACAAGGACACATCTTATCATACTGACTGCCTCAGTCTTCATTTATGATTACGTTCACGTTGGAGCTATCCAAAGTGAAAGCAGCTGCGGTTTAGACTACTACTGAGGCGGGAGAGCAGATTATATCCGTCTTCAATGTTACTCAAAATTCGTACTGCTGCAACAGAAGGGGACCGTGCGTTCCCCGCGCGAGCAAAGAGAACGGTTGTTCTGTGAATACCCAGCACTGTGAAAAGACGCAGTTTTAAGGTGTAACCCTACTATTTATCAAACACTTTGAGACGAGCGAAATGTCCCTCAAACGCGAGCATGGGTGTCCCATAGCCAGTTGTTTACATCTAGACGCATTCACTGCATTTTCTTTTGCGGAATTAGCCTGAAAAGTGACTAGTGCTGCAGCATTTGACAAAATACACgccatttttacttttgttgtgGGCGACTGAGGGTGAACATCGATTCGGttgaaaaaacaacatcagTGTGACATGCATCCACCCACAGCGTTCGTCCATTTTTTTCTTAGGATCAAAAGGCCTTTAAACAATCTTATcagcattataataataattactattattattattttacgtaCATAACGGGCATGTGCCGTTTCTCCTGCTCATGGAGACACGGTGAGGTGCAAGGTCAGACTAAACAGATGTTGTAGTCTTGGCGCCAAGAAATTAGTCTCACACAATTGATTCTGCcgtctttctcctttttttttatcaacacgGATGACTCTaaactcaaaagaaataaaagaaacttcCAGTATCGAGCTGCAGACAGGTCACCGAAGGGCTAGCGGTAGAAACCTGGCATTTCCTTCGATCTAGTCATATTACCATAAAATACAATTGTTTCACAGGACTCCACACAGTGctgtaaatattgtataatttttaaaggACATAGCTACGTTATTCTCTCACTTGAGCACTTTTTCGTATCATTTTGAATTTGGAAAAGATTTTAgagctttttgtttattttattttttgccttaTTTCTTTAACATTAGAGTCTTGGTATATTTTGCCTTTATATTTATAGTCATTTAACCGAATATTGCTTGCTATCTCTTGCGGAAGTCAGTTGCTTTTTAACCCACATTCAGCtgcttttttataaattatgagCTGACTTTactatatgtttatgtatagtAAACAATGTTCAGTCTCCAACAATGTTAGCACTATTTTCTACCCAACGAATTCAATATTATATAtctcaaacatttgaatgtcttttttaattattttgaaatagagATTATTTACACAGTATCGTGGAGAATGGGGAAAGCAAGTGATGTGACCtgcaatattttcatttgaagtCAAACGATTCTTCATTGTTTCATAT

Function

symbol description
pou3f2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within endothelial cell development. Predicted to be located in nucleus. Is expressed in central nervous system; midbrain neural keel; neural rod; and presumptive diencephalon. Orthologous to human POU3F2 (POU class 3 homeobox 2).
pou3f2 Enables identical protein binding activity and sequence-specific double-stranded DNA binding activity. Acts upstream of or within positive regulation of cell population proliferation. Located in nucleoplasm.

NR:

description
PREDICTED: POU domain, class 3, transcription factor 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260181.1 True 3133 mRNA 0.46 1 23520144 23523276

Neighbor

gene id symbol gene type direction distance location
klhl32 klhl32,LOC107704937,LOC107700760 coding upstream 129250 23369980 ~ 23390894 (+)
LOC122360146 LOC107716840,LOC107704933,LOC107587774,LOC107700761,LOC107552831 coding upstream 167544 23347978 ~ 23352600 (+)
gprc6a LOC107716809,LOC107587859,LOC107711720,LOC107552792,LOC107704834,LOC107700677 coding upstream 183305 23330223 ~ 23336839 (+)
sphk2 LOC107704932,LOC107716839,LOC107711736,LOC107552834,LOC107700765 coding upstream 192121 23315942 ~ 23328023 (+)
prpf31 prpf31,LOC107700766,LOC107552837,LOC107711734,LOC107704928,LOC107587780,LOC107716835 coding upstream 214076 23301267 ~ 23306068 (+)
zgc:172323 zgc:172323,LOC107587895,LOC107700752,LOC107716818,LOC107711723,LOC107683363,LOC107577100 coding downstream 91802 23615078 ~ 23618825 (+)
prdm13 prdm13,LOC107716819,LOC107700751,LOC107704864,LOC107711749 coding downstream 100463 23623739 ~ 23628860 (+)
prss35 LOC107704868,LOC107730928,LOC107716822,LOC107716824,LOC107730929,LOC107597124,LOC107587853 coding downstream 222254 23745530 ~ 23752036 (+)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951,LOC107597130 coding downstream 300412 23823688 ~ 23831522 (+)
rhbdl2 rhbdl2,LOC107716826,LOC107704870,LOC107597139,LOC107730925,LOC107700688 coding downstream 308674 23831950 ~ 23835923 (+)
G115462 NA non-coding upstream 253675 23265472 ~ 23266469 (+)
G115422 NA non-coding upstream 376686 23141073 ~ 23143458 (+)
G115420 NA non-coding upstream 411111 23108123 ~ 23109033 (+)
G115416 NA non-coding upstream 424734 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 442268 23052420 ~ 23077876 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 12204 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 32345 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 49697 23572973 ~ 23576648 (+)
G115730 NA non-coding downstream 141990 23665266 ~ 23677259 (+)
G115747 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 non-coding downstream 194575 23717851 ~ 23815099 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 161365 23274989 ~ 23358779 (+)
G115449 NA other upstream 265578 23251382 ~ 23254566 (+)
rps9 rps9,LOC107587787 other upstream 296216 23222050 ~ 23223928 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other upstream 350467 23164566 ~ 23169677 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other upstream 403329 23110283 ~ 23116815 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other downstream 86172 23609448 ~ 23612393 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other downstream 292648 23815924 ~ 23822446 (+)
LOC122360598 NA other downstream 1250543 24773819 ~ 24832618 (+)
G116057 NA other downstream 1479986 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 2029587 25552863 ~ 25554807 (+)

Expression


Co-expression Network