trhra (trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802)


Basic Information

Item Value
gene id trhra
gene name trhra,LOC107600665,LOC107705826,LOC107666857,LOC107551182,LOC107679641,LOC107713802
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22124696 ~ 22129509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260245.1
GGCCTATATTTAGGGGGTTTTGGCAGATTAACAGAGAAACCTATAATTGAACAGACCGTGTATTGGAGAGACTTCCTCTCTTGTTTGCTGCTGCGGCATTACGCACCGCACAACCTGCCCTTACTGACGCTCTCGGTCTCGTATTAGGGTTACAGGGGTCTTTTGAGAGACCATATCAGCCAGTTCAGCCCTAGGCGGTGCAACACCTCTGTCAGCTCTCTGCAGTTATGCGCACCAGGAACAGGATTTTTATATATCACGCAAATTACCACGGACAAATTCTTGGCTCTGCTCCAAACGCAGACGCTTTCATTTTCATCGCTGAGATCTAAAGTCTGCCGTGAGCTGTTTTATTCAAGAAGGACGTTTAAAACGATACGAATTTTGACTTAAAGGAATTTTCTTACTCTGGAATGTTGAAACATGACCGTTTTGCGCGCGTCCTGGAGAACTGAAaagtgatattattattttttttccgcaaaagagaaaacaaaaccgAGGGGAACATGGAGAACAGcactttattaaaatttaacaaCGGGACTGCGGTTTGGACTGATTATAATATCGAATACAAGGTCGCTGGCATCCTCTTAGTGATTCTTATTTGTGGAGTTGGGATTGTTGGCAATGTTATGGTCATTCTTGTGGTCTTAACGACCAAGCACATGCGTACCCCAACTAACTGTTATTTGGTGAGTCTGGCGGTTGCGGACCTCATGGTCCTGACTGCAGCCGGGCTGCCCAACATCACCGAGATTCTGTTCAGTGGCCACTGGGTGTACGGATACGCCGGGTGCCTCTCCATCACTTATTTTCAGTACCTGGGCATCAACGCGTCCTCCTGCTCCATCACAGCCTTCACCATTGAACGCTACATCGCCATTTGCCACCCAATAAAAGCGCAGTTTATGTGCACCCTCTCCCGAGCCAAAAAGATCATCGTTCTCGTTTGGGTTTTAACATCCCTCTATTGCGTTATGTGGTTTTATCTTTGCGACACGAAAGAGGACATTTATGAGAACGCTGTCCTCGTGACATGCGCCTACAAAGTATCCAGAAACCTGTATTTGCCAATATATTTCACAGATTATGCCGTGTTTTACGTTATCCCGCTTTTGCTGGCCACCGTTTTATACGGATTGATCGCAAGGATTCTTTTCCTCAACCCACTCCCTTCGGATCCCAAGGAAGGTCGAAGAAACTGGAAAAAGGAGTCGTCCGTGCATGGGAACTCCCGGAGTTCATCCAGCAGCACAACTGCTGCTTCTCGAAGACAGGTGACAAAGATGCTGGCAGTGGTGGTGATCCTCTTCGCTCTGCTGTGGATGCCCTATCGGACACTGGTGGTGGTCAATTCCTTCCTCGAGAAGGCCTATCTGGACACCTGGTTTGTTCTCTTCTGCCGTCTCTGCATCTACTTGAACAGCGCCATCAACCCTATCATCTACAATGCCATGTCTCAGAAGTTTCGCGCCGCCTTCCACAAGCTCTGCCATTGTGGTCCCCAGCGCTCCGAGAAGCCCCCCACGTATAGCGTGGCCCTCACGTACAGCGTCATCAAGGAGACCTCCAATGGAGAAAGCCCAGACCATTATACCACTGAGCTAGACGACATCCGTGGAGCCGCCAAAGAGCTTCTGCCCGAGAGGAAGAGGCTGTCGTTTAAAGAGTCCTCACTAGCTTGTCAGGACAGATTGGCTAGTGCTTAGATCCTTGGTTGGTATGTTTGATTAGGTTCCTTAATTTGCACTTTCGTAGTGCCTCTGAGTGGCCTATAGGTTTGGCTGCCGTACAACGGAAACAGCATTTTGACAATCATTTCAAACAAAGAAGATTTATCCATAAGCTAGATTTACATAGTAGCTGTAGACCAAGTCTGTGAAGGAGAAGTAATGCTCCTGAAACAATTATGGGTGACGATAGACAGATTATTGATGGATGATTGAACATGACCCGGTGATGGTATTGATTTGGAGGCGATTGAGTTAAGTTAAGGTCCTTGCAAACTGAGTATCAATTTTcgtgtgcgtttttttttcttcttcacatTCCTCATAATTTGCTATCAAAACGCATGCTACGgatgcaaaaatgcataaattgaAATTGATCCAGTTGATCCAAGatccattgattttttttttttatggcgaACAAAAAATTGTCATAAGCGTGCAAACGTGATTGACTCAACGAAAATTTCGGACTCAGTGCAATGACCATCAGGCCACACGATTAATTGTAATAACAGCTGTATTTGTGATATGGCTGTgcgtttcatattttaaagagCCGTGCCCACAAAAGAAGCAGGAGTGTGAGTGCACAAGAACTAGAAATAGCCTTTGTGAAGCGAGGCTCTGTTTTCCGTTACATGCGAGCAGCTCGTGACAGTGTTTTCAGTATCTCAAAGTGGCTTTGTCTGCAGTTAAAGCTTCTCTACACAAGTGCGTTTCTGCATATTTCGGGTGCCTTCATGTATTTGAGCACAGACCATACGCCAAGCATCTTCCCAAACTGTGATAAACTTATGAGCTTTCTGtttaaaggcataaaaaaaacctttaacgACCTCTGTCCCTCTGCCAAAATACAAtcacaattacattttcttcCAAAGCCCTAATGAGAGCTGAAGGGTGAATTCTTTGGTACTTCCAGCCAGAAGATTTGTACCTGCGGACTCAAAGCGATGGCCAGTGGTCACTGTGGCAACTGCTGCATGCATCACCACCAAATAATCACTCTGGAAAACTCGTTCCAGGAACACTTGTCACATTGTCAGTCACAGCACTCCAAAAAAATGGACAGATGATTACCTTTTGGCTCTTGGTCGTTTCAGTTACTATAGAGAAGTAACCTGtccaatcattttttttttattttgcaaagtaTAAAAAGACACAGTTACGAAATTTCAAATACAACAGTCCACCCAGAgacatttttttagcatttcagtCAAGATTCACACCCAGTTCACAAATATATCCGTCTAAAACTAGAGTAAATAACCGTCTGTTGTTTTCGTCATATGTATTGTGCAACATCAGCTGAGGCTGTTTTCTCACATTAAACATGATACTCGCACTGGCTATGAGATTTCCTAGCAGAGCTCAATTTTGCAGACgataaactgcaaaaataaggGGGAGATAAAGATTGTGAATTTGGACGTTTGTATCTgtatcatttgcatatttgtggTATAATGGATAGGAAaggtaaattaattattttccgctgtaaatatatactgctctctctctaaaataaaaacacaacatgttTCAGCTCTCTATCTGTAAGTTTTCGGTACTTGGCTGCTGTAAAATATCTGCATGGACATggattgtgatttttttttccccctcataaTCAGTGAACACTTAAGTGGATGAAATGTACAGCTGTTGTGATGTAAGCAAAACGTGTATGGAGGTAACATTTGCTTATTAGTAGTGTTTAAATTGCTGTATTAAAAAACacgtttttgtatttgtattttgtacagttgttgtttaaaataaactcgTAGTAAATGTTTT

Function

symbol description
trhra Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nongoitrous hypothyroidism 7 and hypertension. Orthologous to human TRHR (thyrotropin releasing hormone receptor).

NR:

description
thyrotropin-releasing hormone receptor

GO: NA

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260245.1 True 3554 mRNA 0.43 2 22124696 22129509

Neighbor

gene id symbol gene type direction distance location
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding downstream 123640 21991274 ~ 22001056 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding downstream 141893 21972672 ~ 21982803 (-)
kiaa1143 kiaa1143,zgc:77056,LOC107713807,LOC107600662,LOC107551194,LOC107679647 coding downstream 153989 21968837 ~ 21970707 (-)
osbpl10b osbpl10,LOC107600617,LOC107713824,LOC107551176,LOC107705753,LOC107668315 coding downstream 163205 21922962 ~ 21961491 (-)
hint3 hint3 coding downstream 467976 21654319 ~ 21656720 (-)
emc2 emc2,LOC107600623,LOC107666844,LOC107679651 coding upstream 50142 22179651 ~ 22208604 (-)
cd83 cd83,LOC107705228,LOC107666866 coding upstream 200670 22330179 ~ 22332034 (-)
zgc:113232 zgc:113232,LOC107705846,LOC107666867,LOC107600626,LOC107756222,LOC108437324 coding upstream 205654 22335163 ~ 22344100 (-)
snrnp48 LOC107679653,LOC107551179,LOC107756216,LOC107600666 coding upstream 218141 22347650 ~ 22351043 (-)
tsnare1 tsnare1,si:ch211-208k15.1,LOC107679652,LOC101472715 coding upstream 290361 22419870 ~ 22523750 (-)
G115170 NA non-coding downstream 250645 21873826 ~ 21874051 (-)
G115155 NA non-coding downstream 299259 21825198 ~ 21825437 (-)
G115098 NA non-coding downstream 735549 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 793338 21331012 ~ 21331358 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 809950 21283464 ~ 21314746 (-)
G115262 NA non-coding upstream 100731 22230240 ~ 22237066 (-)
G115335 NA non-coding upstream 553918 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 644257 22773766 ~ 22774032 (-)
G115536 bnipl,LOC107755792,LOC107556108,LOC107755808 non-coding upstream 756206 22885715 ~ 22888001 (-)
G115548 LOC107704994,LOC107705391,LOC107588482,LOC107755744,LOC107700704,LOC107556105 non-coding upstream 781370 22910879 ~ 22911323 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 35604 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 156161 21964855 ~ 21968535 (-)
G115149 NA other downstream 320892 21801475 ~ 21803804 (-)
G115141 NA other downstream 419737 21704018 ~ 21704959 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 510493 21605958 ~ 21614203 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 762593 22892102 ~ 22901187 (-)
G115554 NA other upstream 803118 22932627 ~ 22933967 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 1390299 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 1453484 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 1538556 23668065 ~ 23675345 (-)

Expression


Co-expression Network