gprc6a (LOC107716809,LOC107587859,LOC107711720,LOC107552792,LOC107704834,LOC107700677)


Basic Information

Item Value
gene id gprc6a
gene name LOC107716809,LOC107587859,LOC107711720,LOC107552792,LOC107704834,LOC107700677
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23330223 ~ 23336839 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260252.1
TGAAAGAAGCCATATACGTATTATAAACAAAGATGTGTGAGAGCATACCTGTCAGTCGTCCAGGTGAACTCAGAGAAAACAGCCTAAAGCAGTGATGGCTGGTGTGAATGTGAGCCTCTTACTCATGTTGTCTGTGCTTGTAGGGGTTAGAGAAGTTTCTCTGGCACAGTTCAGCCATGAAGGAGCCATGGCCCCTGGAGACATTATCATTGGAGGATTTTTCCCCATCCATGAGGCAGCGGAGGCAGTGAACTACACTGGCTCAAATGGCTTCTCTTCTCCTCAGCGTCCAAACTGCAGCAGaTTCTACACAAAAGGTTTAAATCAGGCTCTAGCTATGATTCATGCTGTGGAAATGGCAAACCAATCTCCCATGTTAAGCAGTTTGAACATAACTCTTGGATATCGCATCTATGACACATGTTCTGATGTGACGACTTCACTTTGGGCCGTCCAAGATCTCACACGGCCGTTCTCAGAGTGTGATTCACCAACGACCTCTTCCCAACCTGTCCAGCCAATAATGGCGGTAATTGGAGCCTCCTCTTCTGAGATCTCCATCGCTATTGCCAGGGAACTCAACCTTCTGCTAATTCCACAGATAAGTTATGCATCTACAGCTACGATTCTGAGTGACAAAAGTCGTTTCCCCACTTTCATGAGAACTGTCCCCAATGATGAGTACCAAACCCATGCCATGGTACAACTTCTGAAGGACAATAAATGGACCTGGGTTGGCATTATCATCACAGATGGAGACTATGGGCGTTCTGCTATGGAAAGTTTTGTTAAGCACACCGAAAGTGAGGGAATTTGTGTGGCGTTTAAGGCAATCCTACCAGACTCGCTGGCAGACCAACAAAAATTAAGCACTCACATCAACAAGACTATGGACAtcattgaaaaaaatactaagGTTAATGTGGTGGTCTCATTTGCTAAGTCATCTCAGATGAAGTTGCTATTTCAGGGCCTACTTAGTAggaacatttcaaataatagGGTATGGGTGGCCAGCGACAACTGGTCAACCGCTAAAGATATTCTGAAAGATGTAAACCACTCAGAAATTGGAAATATACTGGGCTTCACCTTCAAAAGTGGAAATGTTACAGCTTTTTATCAGTACCTTAAGGATCTAAAGTTTGAAAGCGAAGCTATGAACAATTCATTCATGGAGGAATTTTTAAAGCAGCCTGATACAGGCAATGCTACAAACGCAGtatataaactaattaaaaacacatattcGGACATGATCTTCAGTGTTCAGATGGCAGTCAGTGCTATTGCTAATGCGGTGGCAGAGCTATGTGTACAAAGACAATGCAAGAAACCTACAGCTATCCAACCCTGGGAGcTCTTTATACACCTGAGGAACATCACTTTTGAGAAAGAAGGAGACATGTACAGTTTTGACGCAAATGGCGATATTAATTTGGGCTATGATGTCTGCCAGTGGGATGAACATGAATCCGAAGAACATGACATTATAGCACAATACTATCCATCTAACACCAGTTTCACATTTACAAGGAAGAATCTAAGTGATATTGAGAATGTGGTATCTAAGTGTTCAGACAGCTGTCAGCCAGGGGAgtacaaaaaaacagcagaggGTCAGCACACTTGCTGTTATGAATGCCTCGTCTGCGCCGAAAACCAGTACTCCAACCACACAGATGCAGACGCATGTTCCAGTTGTGTCACTGACAGCATGTGGTCAAACACTAACAGCTCAGAATGTCATCCCAAGCTTTATGAGTACTTTGAGTGGAATAGTGGGTTCGCTATCGTGCTGTTGACGCTGGCTGCCCTcggcctcctcctcctcttttctgTGTCCGCACTCTTCTTCTGGCAAAGGAACACTCTGGTGGTTAAGGCTGCAGGCGGACCGCTTTGTCATCTGATCCTTTTCTCCCTGCTGGGCAGTTTTATCAGTGTCATTTTCTTTGTGGGTGAACCAAGCAATGAGACGTGTATGGCGAGGCAGGTCATCTTTGGCCTGAGTTTCACGCTGTGTGTTTCATGTATCTTGGTGAAGTCCTTGAAGATCCTTCTAGCGTTCCAGATGAACCTAGACCTGAAGGAGCTTCTTCGCAAGATATACAAGCCGTATGTGATCGTTTGCATCTGCATGGGGCTTCAGGTCGCCATTTGCGCTCTTTGGCTGACCTTGCACAGGCCTTTTAAAGACAAAGCGGTGCAGCCCAAATCCATCCTCCTGGAATGCAAAGAGGGTTCAAGTGTGATGTTTGGGTTAATGCTGGCTTACATAGCTTTGCTGGCGCTGATATGTTTCACATTTGCTTACAAAGGCAGGAAACTTCCCCAGAAGTATAACGAAGCAAAGTTTATCACATTCGGTATGCTCATCTACCTCATGGCCTGGGTCATTTTTATTCCGGTGCATGTCACCACCAGCGGCAAATATGTACCGGCTGTGGAGGTGGTTGTTATTCTCATTTCAAACTACGGGATCTTAAGCTGCCACTTTTTGccaaaatgttacataattattttcaaaaaggaGTATAATACCAAAGATGCATTCTTGAACAGTGTTTATGAATATGCCAGAAAGAGTGCTGAGAACATCAGGGGCTTGACTGGAACTGATCTTCACAGTAAAACCGAAAATCCAGTCTACGTCATATCCAATCCGTCACTTGTGCCTGAGGAGAAACAAGTTTCTGTACCAAAAATAGACAATATGCCTTAAAACAGTTGCAAGACTTTGAGATCATCTGACCAAATTTTGTCTTCATTTGACAAGAAACGTAGAGGTTTTGTATTTCACATGCAATGAACTTTCATGATGATAATTCTATATTGTGCAAAACAGAtcaaatgtatatgtttgtttatatgtaattgtaaaatatgtatttttgtgtacagtgaataaattgtagcaattttacaataatgtttAGTTTGTTAAAGTATTGCAATGTGTAATTCTTTCAacagtagctttttttttacattaaattcagttttatatatattacatgataatatatacaatatataacataatttatgtagtattat
>XM_043260253.1
AAAGAAGCCATATACGTATTATAAACAAAGATGTGTGAGAGCATACCTGTCAGTCGTCCAGGGGTTAGAGAAGTTTCTCTGGCACAGTTCAGCCATGAAGGAGCCATGGCCCCTGGAGACATTATCATTGGAGGATTTTTCCCCATCCATGAGGCAGCGGAGGCAGTGAACTACACTGGCTCAAATGGCTTCTCTTCTCCTCAGCGTCCAAACTGCAGCAGaTTCTACACAAAAGGTTTAAATCAGGCTCTAGCTATGATTCATGCTGTGGAAATGGCAAACCAATCTCCCATGTTAAGCAGTTTGAACATAACTCTTGGATATCGCATCTATGACACATGTTCTGATGTGACGACTTCACTTTGGGCCGTCCAAGATCTCACACGGCCGTTCTCAGAGTGTGATTCACCAACGACCTCTTCCCAACCTGTCCAGCCAATAATGGCGGTAATTGGAGCCTCCTCTTCTGAGATCTCCATCGCTATTGCCAGGGAACTCAACCTTCTGCTAATTCCACAGATAAGTTATGCATCTACAGCTACGATTCTGAGTGACAAAAGTCGTTTCCCCACTTTCATGAGAACTGTCCCCAATGATGAGTACCAAACCCATGCCATGGTACAACTTCTGAAGGACAATAAATGGACCTGGGTTGGCATTATCATCACAGATGGAGACTATGGGCGTTCTGCTATGGAAAGTTTTGTTAAGCACACCGAAAGTGAGGGAATTTGTGTGGCGTTTAAGGCAATCCTACCAGACTCGCTGGCAGACCAACAAAAATTAAGCACTCACATCAACAAGACTATGGACAtcattgaaaaaaatactaagGTTAATGTGGTGGTCTCATTTGCTAAGTCATCTCAGATGAAGTTGCTATTTCAGGGCCTACTTAGTAggaacatttcaaataatagGGTATGGGTGGCCAGCGACAACTGGTCAACCGCTAAAGATATTCTGAAAGATGTAAACCACTCAGAAATTGGAAATATACTGGGCTTCACCTTCAAAAGTGGAAATGTTACAGCTTTTTATCAGTACCTTAAGGATCTAAAGTTTGAAAGCGAAGCTATGAACAATTCATTCATGGAGGAATTTTTAAAGCAGCCTGATACAGGCAATGCTACAAACGCAGtatataaactaattaaaaacacatattcGGACATGATCTTCAGTGTTCAGATGGCAGTCAGTGCTATTGCTAATGCGGTGGCAGAGCTATGTGTACAAAGACAATGCAAGAAACCTACAGCTATCCAACCCTGGGAGcTCTTTATACACCTGAGGAACATCACTTTTGAGAAAGAAGGAGACATGTACAGTTTTGACGCAAATGGCGATATTAATTTGGGCTATGATGTCTGCCAGTGGGATGAACATGAATCCGAAGAACATGACATTATAGCACAATACTATCCATCTAACACCAGTTTCACATTTACAAGGAAGAATCTAAGTGATATTGAGAATGTGGTATCTAAGTGTTCAGACAGCTGTCAGCCAGGGGAgtacaaaaaaacagcagaggGTCAGCACACTTGCTGTTATGAATGCCTCGTCTGCGCCGAAAACCAGTACTCCAACCACACAGATGCAGACGCATGTTCCAGTTGTGTCACTGACAGCATGTGGTCAAACACTAACAGCTCAGAATGTCATCCCAAGCTTTATGAGTACTTTGAGTGGAATAGTGGGTTCGCTATCGTGCTGTTGACGCTGGCTGCCCTcggcctcctcctcctcttttctgTGTCCGCACTCTTCTTCTGGCAAAGGAACACTCTGGTGGTTAAGGCTGCAGGCGGACCGCTTTGTCATCTGATCCTTTTCTCCCTGCTGGGCAGTTTTATCAGTGTCATTTTCTTTGTGGGTGAACCAAGCAATGAGACGTGTATGGCGAGGCAGGTCATCTTTGGCCTGAGTTTCACGCTGTGTGTTTCATGTATCTTGGTGAAGTCCTTGAAGATCCTTCTAGCGTTCCAGATGAACCTAGACCTGAAGGAGCTTCTTCGCAAGATATACAAGCCGTATGTGATCGTTTGCATCTGCATGGGGCTTCAGGTCGCCATTTGCGCTCTTTGGCTGACCTTGCACAGGCCTTTTAAAGACAAAGCGGTGCAGCCCAAATCCATCCTCCTGGAATGCAAAGAGGGTTCAAGTGTGATGTTTGGGTTAATGCTGGCTTACATAGCTTTGCTGGCGCTGATATGTTTCACATTTGCTTACAAAGGCAGGAAACTTCCCCAGAAGTATAACGAAGCAAAGTTTATCACATTCGGTATGCTCATCTACCTCATGGCCTGGGTCATTTTTATTCCGGTGCATGTCACCACCAGCGGCAAATATGTACCGGCTGTGGAGGTGGTTGTTATTCTCATTTCAAACTACGGGATCTTAAGCTGCCACTTTTTGccaaaatgttacataattattttcaaaaaggaGTATAATACCAAAGATGCATTCTTGAACAGTGTTTATGAATATGCCAGAAAGAGTGCTGAGAACATCAGGGGCTTGACTGGAACTGATCTTCACAGTAAAACCGAAAATCCAGTCTACGTCATATCCAATCCGTCACTTGTGCCTGAGGAGAAACAAGTTTCTGTACCAAAAATAGACAATATGCCTTAAAACAGTTGCAAGACTTTGAGATCATCTGACCAAATTTTGTCTTCATTTGACAAGAAACGTAGAGGTTTTGTATTTCACATGCAATGAACTTTCATGATGATAATTCTATATTGTGCAAAACAGAtcaaatgtatatgtttgtttatatgtaattgtaaaatatgtatttttgtgtacagtgaataaattgtagcaattttacaataatgtttAGTTTGTTAAAGTATTGCAATGTGTAATTCTTTCAacagtagctttttttttacattaaattcagttttatatatattacatgataatatatacaatatataacataatttatgtagtattat

Function

NR:

description
PREDICTED: G-protein coupled receptor family C group 6 member A

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0016595 glutamate binding molecular_function

KEGG:

id description
K04622 GPRC6A; G protein-coupled receptor family C group 6 member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260252.1 True 3060 mRNA 0.42 6 23330223 23336839
XM_043260253.1 False 2978 mRNA 0.42 7 23330225 23336839

Neighbor

gene id symbol gene type direction distance location
sphk2 LOC107704932,LOC107716839,LOC107711736,LOC107552834,LOC107700765 coding upstream 2200 23315942 ~ 23328023 (+)
prpf31 prpf31,LOC107700766,LOC107552837,LOC107711734,LOC107704928,LOC107587780,LOC107716835 coding upstream 24155 23301267 ~ 23306068 (+)
lmtk3 LOC107716834,LOC107704931,LOC107587782,LOC107711732,LOC107700767 coding upstream 29393 23285043 ~ 23300830 (+)
leng1 leng1,LOC107552839,LOC107716812,LOC107587899,LOC107704929,LOC107711733,LOC107700768 coding upstream 45967 23281818 ~ 23284256 (+)
tmc4 tmc4,LOC107711726,LOC107700770,LOC107552843,LOC107579598 coding upstream 48529 23273926 ~ 23281694 (+)
LOC122360146 LOC107716840,LOC107704933,LOC107587774,LOC107700761,LOC107552831 coding downstream 11139 23347978 ~ 23352600 (+)
klhl32 klhl32,LOC107704937,LOC107700760 coding downstream 33141 23369980 ~ 23390894 (+)
pou3f2b pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 coding downstream 183305 23520144 ~ 23523276 (+)
zgc:172323 zgc:172323,LOC107587895,LOC107700752,LOC107716818,LOC107711723,LOC107683363,LOC107577100 coding downstream 278239 23615078 ~ 23618825 (+)
prdm13 prdm13,LOC107716819,LOC107700751,LOC107704864,LOC107711749 coding downstream 286900 23623739 ~ 23628860 (+)
G115462 NA non-coding upstream 63754 23265472 ~ 23266469 (+)
G115422 NA non-coding upstream 186765 23141073 ~ 23143458 (+)
G115420 NA non-coding upstream 221190 23108123 ~ 23109033 (+)
G115416 NA non-coding upstream 234813 23091343 ~ 23095410 (+)
G115371 NA non-coding upstream 252347 23052420 ~ 23077876 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding downstream 198641 23535480 ~ 23559924 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding downstream 218782 23555621 ~ 23568054 (+)
G115718 NA non-coding downstream 236134 23572973 ~ 23576648 (+)
G115730 NA non-coding downstream 328427 23665266 ~ 23677259 (+)
G115747 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 non-coding downstream 381012 23717851 ~ 23815099 (+)
G115449 NA other upstream 75657 23251382 ~ 23254566 (+)
rps9 rps9,LOC107587787 other upstream 106295 23222050 ~ 23223928 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other upstream 160546 23164566 ~ 23169677 (+)
LOC122360203 LOC107704907,LOC107714612,LOC107587796 other upstream 213408 23110283 ~ 23116815 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other upstream 354449 22964569 ~ 22975774 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other downstream 272609 23609448 ~ 23612393 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other downstream 479085 23815924 ~ 23822446 (+)
LOC122360598 NA other downstream 1436980 24773819 ~ 24832618 (+)
G116057 NA other downstream 1666423 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 2216024 25552863 ~ 25554807 (+)

Expression


Co-expression Network