tmod4 (tmod4,LOC107689841,LOC107663362)


Basic Information

Item Value
gene id tmod4
gene name tmod4,LOC107689841,LOC107663362
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 17870834 ~ 17875751 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260259.1
TGTGAATTGAGAGTACCATCGAGCAGCAAACATGTCTAAGAGCGATCCCCGAGACATTGATGAGGATGCCATCCTCAGGGGCCTCAGCGCTGAAGAGCTGGAAAAGCTGGAGTATGAACTGCAGGAGATGGACCCTGAGAATGCCATCCTTCCAGCTGGGTACCGTCAGCGTGACCAGACCAAGAAAAGTCCCACAGGCCCCTTTGATCGCTTCGCCCTGATGGATTTCCTAGAGAAGCAGGCCATGGAACACAAGGACAGAGATGACCTGGTGCCCTTTACAGGCGAGAAGAGAGGAAAGGCCTTCGTCCCTAAACCAGGTTCAGGACAAATCCCTGCGGAGGACCAGATCACTCTGGAACCTGAGCTGGAGGAAGCACTGAAGAACGCAACAGATGCTGAGATGTGTGACATTGCAGCCATCCTGGGAATGTACACACTCATGAGCAACAAGCAGTATTATGATGCCCTGAACACCACCGGCAAGATTGCCAACACAGAAGGCATCAACAGTGTGGTGAAACCAGATGTGTATAAGATCTATCCCGACGAGCCTCCTAATGAAACAGATGTAGAGGACACTCTCCGCTGCATCCAGAAAAATGACAATAGGCTGACAGAGGTCAACCTCAACAACATCCCGGACATTCCCATCCCAACCTTAAAAGCGATTTTTGAGGGTATGAAGAGTAACACACACGTGTTTAGCCTCAGCATCGCTGGGACACGCAGCAATGACCCCGTGGCCTATGCTATAGCTGAGATGTTACAGTCCAACAATACCTTGCAGAGCCTCAACATTGAGTCCAACTTCATTACTGCACAAGGCATGATGGCCATCGTCAAGGCACTGCGAGAAAACTCCACTCTGATTGAGATTAAGATCGACAACCAAAGACAGAAACTGGGCGACTCAGTTGAGATGGAGATTGCAACTATGTTGGAGAACAACCCCAGCATCATAAAAATTGGTTATCATTTCACTCAGCAGGGCCCGCGCGCGAGAGCCGCGATGGCCATCACAAGAAACAATGATATCCTTCGCCAGCAGAGAGTAAGATGAAAAGACGATGGAGTTTAGTTCATTTAGGAGGTATCAAACTTCTCAATATGCACTCTTGGAAATCGTACTGGCGCTCCAGTAACAGCCAAGACAACCCCTACAGATGACCCTGATACGCTTTTACCATTCGCCAGCGGCACATTGTGGATATCATTACCGCCAGCTTGACAAGACTTCATTGCTTTTTGTGGATTTCATCAAATCAAAAGCTCTAATCTAATAAAATTGACCTGCTCTTTAATACCTCAGTTTGCAAACTTGAAAAAGACACCAGTTGCTCAGTTCATTTTCTGGTTATATGGTGCTTCCGTAAaggttttttgtaaataattgaaataaaatattacattctatATTGTCTAA

Function

symbol description
tmod4 Predicted to enable tropomyosin binding activity. Acts upstream of or within skeletal myofibril assembly. Predicted to be active in striated muscle thin filament. Is expressed in head muscle and myotome. Orthologous to human TMOD4 (tropomodulin 4).

NR:

description
PREDICTED: tropomodulin-4

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260259.1 True 1426 mRNA 0.47 9 17870834 17875751

Neighbor

gene id symbol gene type direction distance location
mcl1b LOC107587828,LOC107741748,LOC107689846,LOC107732475,LOC107597989,LOC107663357 coding upstream 20400 17847984 ~ 17850434 (+)
LOC122359893 LOC107663319,LOC107587833,LOC107741753,LOC107689852,LOC107597987,LOC107597985,LOC107689850 coding upstream 65174 17801777 ~ 17805660 (+)
LOC122359890 LOC107689850,LOC107663331,LOC107587832,LOC107597985,LOC107741752,LOC107597987,LOC107663319,LOC107587833 coding upstream 72161 17791356 ~ 17798673 (+)
ctss2.1 LOC107689850,LOC107663319,LOC107663331,LOC107587832,LOC107597985,LOC107741752,LOC107597987 coding upstream 79940 17787428 ~ 17790894 (+)
ctsk ctsk,LOC107689854,LOC107587836,LOC107741754,LOC107717769,LOC107663458 coding upstream 85514 17781397 ~ 17785320 (+)
lysmd1 lysmd1,LOC107741747,LOC107587824,LOC107597990,LOC107732482 coding downstream 3448 17879199 ~ 17882957 (+)
sema6e sema6e,LOC107587820,LOC107741742,LOC107732474,LOC107597993,LOC107663405 coding downstream 122046 17997797 ~ 18122426 (+)
tmem79b tmem79b,LOC107741741,LOC107704887,LOC107587819,LOC107732471,LOC107597995 coding downstream 264165 18139916 ~ 18143979 (+)
pear1 pear1,LOC107741736,LOC107587815,LOC107704888,LOC107671660,LOC107597999,LOC107732476 coding downstream 284272 18160023 ~ 18194810 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding downstream 345280 18221031 ~ 18221936 (+)
G113851 NA non-coding upstream 98910 17754254 ~ 17771924 (+)
G113850 NA non-coding upstream 117046 17752760 ~ 17753788 (+)
G113790 NA non-coding upstream 166085 17687840 ~ 17704749 (+)
G113795 NA non-coding upstream 176020 17692771 ~ 17694814 (+)
LOC122361056 NA non-coding upstream 200661 17656614 ~ 17670173 (+)
G113882 NA non-coding downstream 15476 17891227 ~ 17891719 (+)
LOC122359994 NA non-coding downstream 17219 17892970 ~ 17933477 (+)
G113942 LOC107587908,LOC100536175,LOC103025787 non-coding downstream 258135 18133886 ~ 18136989 (+)
G113954 lmna,LOC107741735,LOC107587813,LOC107704890,LOC107598000,LOC107671682,LOC107723101 non-coding downstream 323499 18199250 ~ 18200429 (+)
G113969 NA non-coding downstream 408403 18284154 ~ 18284764 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 23424 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 133352 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 463638 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 958953 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1046851 16767060 ~ 16823983 (+)
G114131 NA other downstream 772794 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 799809 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 882554 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 932993 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 951503 18827254 ~ 18841584 (+)

Expression


Co-expression Network