lysmd1 (lysmd1,LOC107741747,LOC107587824,LOC107597990,LOC107732482)


Basic Information

Item Value
gene id lysmd1
gene name lysmd1,LOC107741747,LOC107587824,LOC107597990,LOC107732482
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 17879199 ~ 17882957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260262.1
GACATGGGCGGACCTTACGTTAGCTGACGCCATGGCAACAGAGGCTAAGCTAATCTATTAAGGGCTCGGGACAAATAAGTTTTAAGAATGTCTGAACTTAAAATGTAACCTCAACTGACTTTATTTCTCCCGTTAATTTGACTCATAACAGAAGCTGTTATGTTTAATACTGCCGTCATGCGTTCAGCAGCCGCAGATGGTCAGCTGAAGTTCATGTTAAGTCATTATTAGAGGAAGGCTGAAACTCAGGTCATGTCCGCGGATCACTCGGCGTCAATGGCCGGGACTCACGGCCTCTTGCGCGGCCAGCGCACCCGGTCGTACGGCAGCCTGGTGTCCTCCTCATTATCGCCCCTTAGACAAAGACGAATTGAGCATAAAGTCCAGCCGGGTGAGACCTTGCAAGGACTGTCACTGAAATATGGCGTGTCTATGGAGCAAATCAAAAGGGCAAACAGACTGTACACAAATGATTCGATATTCCTAAAGGAGTCCCTCTTCATCCCTGTGCTGGTAGAGTCTGTGTCTTTCACAAATGGAGTTGAATTGACCCAGGACGAGACAAGTCCAACACAAATACACGCTGAGATTTCTGATGAGATCCCCAAAAGCAGAACAAACTCTATTTGCGAAGCGAACGCTGATCTGTCACCAGTGGAATACCTAAAAAAGATGGACAGCTTGATCAGTCAGTCCAAACAAGCAGCTGTGAAGACCTGCCAGGAGGGAGAGAAACAgttTTCATCTCTGGAGCAACTCCATCACAGCAGTCTGACGTCTGACAGAGCTTCCTCCCAGCAGGCCATTTTGGGAGCTGTTCCCATTACAATCACCAAACGGTCCAGGAATTTGAGGGATAGGGAGGATGAGATCTTCCAGCTCTGATGTAGGCATTTATTAGGACTCCTCTGTTTTCCGTGTTATTTATACAAGTCGATTGTTTTAGAGGGCTCATTGGTTTTCATGCCGTTATAATGTGGAGATTGCTGAAGTGATTCgcaatagtttttttaaattaaaactactttCAGCTTTAGACAGGTATAATCAACGTAAGAGCACTGTAGCTTGATGCCTAAAAGTAATAATGTGAATAATTCTGCTGTATTTCATATAAGCGTAACCAAAGTAACGACAGACAGATCTGCGTGTGACACAGATGACTGCATTTAAATGGAATAACTAATTGGGAATCTAGCTtgaaaaatttatattgattttaatactACCTCACAAATACTTGCTAgaaatactattatagttttagAAAACTGAAAAGTATGCACTTTGAGAATGTGCCACTGGACGTATTTCTGTCAAACTTGTGAACACGATGCATGGTTTTGCACTGCAGTCACATGCTTggtgtttttctgtttggttTACATTGTGCTAAAGTGTCTAATGGCCTTTGTGGTTGCAAAAACACGATAAAGACTTTGACAGTGAAGACTCATTTCCTGGACTTGTTCATGTTTTGCATCAGTGATATAAATGTTGTGATATGAAATGCACAAATTAAATGCCATAATTATGTA

Function

symbol description
lysmd1 Is expressed in central nervous system. Orthologous to human LYSMD1 (LysM domain containing 1).

NR:

description
lysM and putative peptidoglycan-binding domain-containing protein 1-like

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260262.1 True 1538 mRNA 0.42 4 17879199 17882957

Neighbor

gene id symbol gene type direction distance location
tmod4 tmod4,LOC107689841,LOC107663362 coding upstream 3448 17870834 ~ 17875751 (+)
vps72b vps72,si:ch211-203d17.1,LOC107689907 coding upstream 8257 17860939 ~ 17870942 (+)
mcl1b LOC107587828,LOC107741748,LOC107689846,LOC107732475,LOC107597989,LOC107663357 coding upstream 28765 17847984 ~ 17850434 (+)
LOC122359893 LOC107663319,LOC107587833,LOC107741753,LOC107689852,LOC107597987,LOC107597985,LOC107689850 coding upstream 73539 17801777 ~ 17805660 (+)
LOC122359890 LOC107689850,LOC107663331,LOC107587832,LOC107597985,LOC107741752,LOC107597987,LOC107663319,LOC107587833 coding upstream 80526 17791356 ~ 17798673 (+)
sema6e sema6e,LOC107587820,LOC107741742,LOC107732474,LOC107597993,LOC107663405 coding downstream 114840 17997797 ~ 18122426 (+)
tmem79b tmem79b,LOC107741741,LOC107704887,LOC107587819,LOC107732471,LOC107597995 coding downstream 256959 18139916 ~ 18143979 (+)
pear1 pear1,LOC107741736,LOC107587815,LOC107704888,LOC107671660,LOC107597999,LOC107732476 coding downstream 277066 18160023 ~ 18194810 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding downstream 338074 18221031 ~ 18221936 (+)
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding downstream 349087 18232044 ~ 18239325 (+)
G113851 NA non-coding upstream 107275 17754254 ~ 17771924 (+)
G113850 NA non-coding upstream 125411 17752760 ~ 17753788 (+)
G113790 NA non-coding upstream 174450 17687840 ~ 17704749 (+)
G113795 NA non-coding upstream 184385 17692771 ~ 17694814 (+)
LOC122361056 NA non-coding upstream 209026 17656614 ~ 17670173 (+)
G113882 NA non-coding downstream 8270 17891227 ~ 17891719 (+)
LOC122359994 NA non-coding downstream 10013 17892970 ~ 17933477 (+)
G113942 LOC107587908,LOC100536175,LOC103025787 non-coding downstream 250929 18133886 ~ 18136989 (+)
G113954 lmna,LOC107741735,LOC107587813,LOC107704890,LOC107598000,LOC107671682,LOC107723101 non-coding downstream 316293 18199250 ~ 18200429 (+)
G113969 NA non-coding downstream 401197 18284154 ~ 18284764 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 31789 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 141717 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 472003 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 967318 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1055216 16767060 ~ 16823983 (+)
G114131 NA other downstream 765588 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 792603 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 875348 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 925787 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 944297 18827254 ~ 18841584 (+)

Expression


Co-expression Network