ntrk1 (ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446)


Basic Information

Item Value
gene id ntrk1
gene name ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19029066 ~ 19052616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260297.1
CTGTAACAGGTGAAGCTCTTCTGATCCATCCGTGTCCACCTGCAGCTCACGGGTTTGGCTTCTGCGAGTGTCACAGAGGTGTCTGGTGACCACTGCTCTCTCTcatctcacactcacactcaacTAATGGACTGCTTTGCCCCTCCCCTCCGATTCTCCATCTCGGACTGGGAGGTagtgagaggaggagaggaggcaACAGCCCACCGTTCCCCTGGGCCCTGCTACACGGCTCAATAGCTCAGCTCCTGGATGGGATCATAACCCTGAGTGCTGGCCAAGAGAAGAGCCGCTTCTCCTCACGTCCAGATTTGCTGCTGCAGGGTGGAGTTTCTCCCAGGATAACAAAACTCACTCGAACCCCACCATGGCTGACCGTAAGGTGGCCCCGGTTGCGGTTGCGCGTCTCGTCCTGGTCGCGCCAGCCCTGAGCGGATGCCCAAGCGCCTGCCGCTGCTCCTTCGCCATGCTTCAGTGCCTGGAGCCGGACGGAATCAGCAGCATCCCCGCGCTGGCGGCGCAGGAGAGCGAAAACGTCACTGAAATATACATAGAGGGTCAAACCAACCTGGAGAACATCACAGATGTAGACCTCCCCAACTACAGAGAACTGAAGAACCTgACGGTCACATATTGTGGGTTGCTGTACATCTCCGAAAATGCCTTCCAGCATAATTTCAAGCTGCAGTATGTAAACCTGGCCTTTAATTATCTGGCGCACATCAGTTGGAGAGTGTTCCAATCAGTCCCTCTGTTGAGTCTAGTCTTGAGGGACAATTCGCTCACCTGCTCGTGTGACATTTACTGGCTTCAGCAGTGGcacagaaaaagacaaagtgACGCTGATTCTCAACAAACCTGCATCCACAACGGCAACAGCATTCAGCTGGATTCATTTGAAATGGATAACTGCAGTATTCCCGAGGTCACAATTCACCCCTCAACACTGACCACTCAAGAAGGTGGAAATCTGACATTCACCTGTCTGGTGACAGGAGTACCAACACCGGTGATCCGCTGGAGAACAGAGCACCTACAGTCCAACTGGACCCTGCAGCGAGGAATCTGGGGATCAAGCCTGGAGCTGATTCTGTACATGAGGAACGTTTCTTCTGGAGACAACCTGCACAACCTCACCTGTGAGGCGGAGAACCGGGCAGGAATGGGAGAAGCCGTGGTGCAGCTGGACATTGAATTTCCAGTGCGGATCTTGTTTCTAAAGGACCCAGAGCCGCAACATCACTGGTGTTTCCCATTCGCTGTGGACAGCAATCCTCCCGCCAGCATCAGATGGCTGTACAACAACCTGCCTCTCATTGAAACACGCTACTCCTACACCGAACTCATCCGAGATGCGGCTGACGGCTCCATTCAACACGGCTGTCTGTTCCTCAACAAGCCCACGCACCTCAACAACGGCAACTACACGCTCATCGTGGAGAACAAACTGGGCAGAGACCAGGCTACAGGCTACGGGAAGTTCATGGACAATCCTTTTGACCCCTCTGACCCGGAGGGCATCATTCCTGTCCTCACCGATGACCCAACAGCTCCCACTAACCAGTCAACGGAGACAGAGAAACTGGAGAGCAGAGTGTTTGGGGTGTCGGTAGCAGTGGGTCTTGCTGTATTCGCGTGCACATTTCTGCTCATCATGGTTGTCGTCATCAATAAATGTGGACAACACTCCAAGTTTGGCATCCACCGTTCGTCTGTTCTAGGCACTGAGGATGATTTGGCCGTATCTCTTCGCTTCATGAACTTCGGTGCAAGTCCTCCGTCTTCAGATGATGGCACGCTGGATTCTGGCTTGTCTAGTTTTGTAGAGAACCCGCAGTACTTCTGTGGCATCATCAAAGATAAAGATATGTGTGTTCAgcacattaaaagaaaagacattGTTCTGAAGTGGGAACTGGGTGAAGGAGCTTTTGGTAAGGTGTACCTGGCAGAATGTGCCAACCTCTGTCCTGATACTGACAAGATGCTGGTTGCTATCAAGACCTTGAAAGTGGCCAACGAGTCGACCCGGCAGGACTTCCAGCGCGAGGCTGAGCTTCTCACGGTGCTGCAGCATGAACACATTGTGCGGTTCTACGGCGTGTGTACAGACGGAGAACCTCTAGCCATGGTGTTTGAGTACATGCGACACGGAGACCTCAACCGCTTTCTAAGGGCTCACGGTCCAGATGCTCGTATCCTGGATGAGATGAAGGTTCCTCCGATGGGTCAGTTGACTCTACCTCAGATGCTCCACATCGCAGCTCAGATCGCCTCGGGCATGGTGTACCTCGCTTCCCTTCATTTCGTCCACAGAGACCTGGCCACCAGGAACTGTTTGGTCGGAGAAGGGCTGGTGGTGAAGATCGGGGACTTTGGGATGTCGAGAGACATTTACAGCACTGATTACTACAGGGTCGGCGGGAGGACGATGCTGCCCATTCGCTGGATGCCACCAGAAAGCATCATGTACAGGAAGTTCACCACGGAGAGTGACATCTGGAGCTTTGGAGTGGTCCTTTGGGAAATCTTCACATATGGCAAACAACCCTGGTATCAACTATCCAACAGTGAGGCCATTGAGTGCATCACACAGGGGCGAGAGCTTGAACGACCACGTACCTGCCCGAAGGAAGTGCATCTCCTCATGCAGGGCTGCTGGCAGAGAGAACCGCAGCAGAGGCTCGTCATCAAGGACATCTACAACCGCCTCGTGGCCCTCGTCAAGAACCCGCCCGTCTATCTGGACATCCTGGAGTAACAGCACCCTGAAAGCACCTGCATGGAAAAGACATACTTCTGGAAGCAGGCTGTTTGAAGAGGAAAGTCACTGGTGGGTTTTGGACGGACACAATTCACAAACTGTCTCAGATGTGCAGTATGAACCTTTGCGGTGTTTTGTTGTGTACGTTTTAATCCACCGGACGGTGTAAGATTGTGTACATgtgttcaaatttaaaaaaaaaagtaaaagtaacgGACTGAGTAAATGGACAGTGAATTCTTTGAATATGCATTAGTGGAAATTGCTCATGGATCTTCATGACTCACCCCTGAAGAGACACTGGATTTTCTATATGAGGATACTGATGTCAAGGTCTTGTAATTAAAGGTcattaaaggtgaagtgtgtaatttttctcAGTCCAGTCTAATATGCAGTCACGATCGATTTTCTcattaaacgtaaaaaaaaaagtttccctGTTTGTTAGTGCATACTGCCCAGCCTGACATAGCAACAGCCCAACCAATGGCGTGAGTCTAGGGACGGGACTTTCTGTTTGTCTGACCAATGGGGGCTTGTATTACAGAATTATCCAAACTCATAATCCTATTCTATTTCTAGCCTAGGTTTTTTGTCTCGTTTCTAggtaaaatatatagaatttcCTAAATCAAGAAGAATTTTCATTACAATTTTTTGCTTACCTCATTGTAAgcagattatttagcttgttcTGAGCAAAACGTCACCTAATTTTGACTTCTTTTCCTGAAAACAATACAAtacttttacttgtttaaaaaatccttcttgatgtaaggatttgtagatattttggctagaaacaagacaaaaagcatgttttgagGTGCATCTGTTTTGCTAAATTTATGaaggtaaaattaaaaacttttttaaacccCAAAAATGAGGTTTCtgccttatttttaatttttaatttaaagattcATAAATCAATAAGACACATTTACTTGAGGTGCAAAAGAAATGTCTTGAAGTGAGTTTGTGATTGAAACAAATATCTACCAGGGCACTCAGAAAACTGAGCTTCATTCAAAGAGGAAAACACTTTTAGATATTGATATAGATATTTGTTAgacattgttattttaagcataaaccaGTGTTTAAGCATAAACCAGCAGACTTCGTacctttgttttgcatctcaAGTCAATGAATCCTTATTTAAGAGTTTCTAGACATTTTCCTGTAAAAAAGAGACAAACATACTCATTAAGAACATGATTTTTGCAATGCACGcaacatttaatgccacaaatgaatgattcaatgcaTTCTAAAGGAAAGAATTATGATTGGAAGTTTCTGTAatacaacatattttaacatgcattacATACTTCACCTTTAACCATCATGTCCCTCCCCAAACAAAGACTCTTTAAGTTGCTGTGATTTACACATTGTGCCAATCTGACCGCGTTTCTTTTCTGTGTCTTGCGATTATGAATATACTACATCAGTCTGTTATGCGTGATTGACACGTGCATGTATTGTACATCTCTCTATGTTAAACAGCAACATCCTGTTACGGCTCCGA
>XM_043260298.1
CTGTAACAGGTGAAGCTCTTCTGATCCATCCGTGTCCACCTGCAGCTCACGGGTTTGGCTTCTGCGAGTGTCACAGAGGTGTCTGGTGACCACTGCTCTCTCTcatctcacactcacactcaacTAATGGACTGCTTTGCCCCTCCCCTCCGATTCTCCATCTCGGACTGGGAGGTagtgagaggaggagaggaggcaACAGCCCACCGTTCCCCTGGGCCCTGCTACACGGCTCAATAGCTCAGCTCCTGGATGGGATCATAACCCTGAGTGCTGGCCAAGAGAAGAGCCGCTTCTCCTCACGTCCAGATTTGCTGCTGCAGGGTGGAGTTTCTCCCAGGATAACAAAACTCACTCGAACCCCACCATGGCTGACCGTAAGGTGGCCCCGGTTGCGGTTGCGCGTCTCGTCCTGGTCGCGCCAGCCCTGAGCGGATGCCCAAGCGCCTGCCGCTGCTCCTTCGCCATGCTTCAGTGCCTGGAGCCGGACGGAATCAGCAGCATCCCCGCGCTGGCGGCGCAGGAGAGCGAAAACGTCACTGAAATATACATAGAGGGTCAAACCAACCTGGAGAACATCACAGATGTAGACCTCCCCAACTACAGAGAACTGAAGAACCTgACGGTCACATATTGTGGGTTGCTGTACATCTCCGAAAATGCCTTCCAGCATAATTTCAAGCTGCAGTATGTAAACCTGGCCTTTAATTATCTGGCGCACATCAGTTGGAGAGTGTTCCAATCAGTCCCTCTGTTGAGTCTAGTCTTGAGGGACAATTCGCTCACCTGCTCGTGTGACATTTACTGGCTTCAGCAGTGGcacagaaaaagacaaagtgACGCTGATTCTCAACAAACCTGCATCCACAACGGCAACAGCATTCAGCTGGATTCATTTGAAATGGATAACTGCAGTATTCCCGAGGTCACAATTCACCCCTCAACACTGACCACTCAAGAAGGTGGAAATCTGACATTCACCTGTCTGGTGACAGGAGTACCAACACCGGTGATCCGCTGGAGAACAGAGCACCTACAGTCCAACTGGACCCTGCAGCGAGGAATCTGGGGATCAAGCCTGGAGCTGATTCTGTACATGAGGAACGTTTCTTCTGGAGACAACCTGCACAACCTCACCTGTGAGGCGGAGAACCGGGCAGGAATGGGAGAAGCCGTGGTGCAGCTGGACATTGAATTTCCAGTGCGGATCTTGTTTCTAAAGGACCCAGAGCCGCAACATCACTGGTGTTTCCCATTCGCTGTGGACAGCAATCCTCCCGCCAGCATCAGATGGCTGTACAACAACCTGCCTCTCATTGAAACACGCTACTCCTACACCGAACTCATCCGAGATGCGGCTGACGGCTCCATTCAACACGGCTGTCTGTTCCTCAACAAGCCCACGCACCTCAACAACGGCAACTACACGCTCATCGTGGAGAACAAACTGGGCAGAGACCAGGCTACAGGCTACGGGAAGTTCATGGACAATCCTTTTGACCCCTCTGACCCGGAGGGCATCATTCCTGTCCTCACCGATGACCCAACTCCCACTAACCAGTCAACGGAGACAGAGAAACTGGAGAGCAGAGTGTTTGGGGTGTCGGTAGCAGTGGGTCTTGCTGTATTCGCGTGCACATTTCTGCTCATCATGGTTGTCGTCATCAATAAATGTGGACAACACTCCAAGTTTGGCATCCACCGTTCGTCTGTTCTAGGCACTGAGGATGATTTGGCCGTATCTCTTCGCTTCATGAACTTCGGTGCAAGTCCTCCGTCTTCAGATGATGGCACGCTGGATTCTGGCTTGTCTAGTTTTGTAGAGAACCCGCAGTACTTCTGTGGCATCATCAAAGATAAAGATATGTGTGTTCAgcacattaaaagaaaagacattGTTCTGAAGTGGGAACTGGGTGAAGGAGCTTTTGGTAAGGTGTACCTGGCAGAATGTGCCAACCTCTGTCCTGATACTGACAAGATGCTGGTTGCTATCAAGACCTTGAAAGTGGCCAACGAGTCGACCCGGCAGGACTTCCAGCGCGAGGCTGAGCTTCTCACGGTGCTGCAGCATGAACACATTGTGCGGTTCTACGGCGTGTGTACAGACGGAGAACCTCTAGCCATGGTGTTTGAGTACATGCGACACGGAGACCTCAACCGCTTTCTAAGGGCTCACGGTCCAGATGCTCGTATCCTGGATGAGATGAAGGTTCCTCCGATGGGTCAGTTGACTCTACCTCAGATGCTCCACATCGCAGCTCAGATCGCCTCGGGCATGGTGTACCTCGCTTCCCTTCATTTCGTCCACAGAGACCTGGCCACCAGGAACTGTTTGGTCGGAGAAGGGCTGGTGGTGAAGATCGGGGACTTTGGGATGTCGAGAGACATTTACAGCACTGATTACTACAGGGTCGGCGGGAGGACGATGCTGCCCATTCGCTGGATGCCACCAGAAAGCATCATGTACAGGAAGTTCACCACGGAGAGTGACATCTGGAGCTTTGGAGTGGTCCTTTGGGAAATCTTCACATATGGCAAACAACCCTGGTATCAACTATCCAACAGTGAGGCCATTGAGTGCATCACACAGGGGCGAGAGCTTGAACGACCACGTACCTGCCCGAAGGAAGTGCATCTCCTCATGCAGGGCTGCTGGCAGAGAGAACCGCAGCAGAGGCTCGTCATCAAGGACATCTACAACCGCCTCGTGGCCCTCGTCAAGAACCCGCCCGTCTATCTGGACATCCTGGAGTAACAGCACCCTGAAAGCACCTGCATGGAAAAGACATACTTCTGGAAGCAGGCTGTTTGAAGAGGAAAGTCACTGGTGGGTTTTGGACGGACACAATTCACAAACTGTCTCAGATGTGCAGTATGAACCTTTGCGGTGTTTTGTTGTGTACGTTTTAATCCACCGGACGGTGTAAGATTGTGTACATgtgttcaaatttaaaaaaaaaagtaaaagtaacgGACTGAGTAAATGGACAGTGAATTCTTTGAATATGCATTAGTGGAAATTGCTCATGGATCTTCATGACTCACCCCTGAAGAGACACTGGATTTTCTATATGAGGATACTGATGTCAAGGTCTTGTAATTAAAGGTcattaaaggtgaagtgtgtaatttttctcAGTCCAGTCTAATATGCAGTCACGATCGATTTTCTcattaaacgtaaaaaaaaaagtttccctGTTTGTTAGTGCATACTGCCCAGCCTGACATAGCAACAGCCCAACCAATGGCGTGAGTCTAGGGACGGGACTTTCTGTTTGTCTGACCAATGGGGGCTTGTATTACAGAATTATCCAAACTCATAATCCTATTCTATTTCTAGCCTAGGTTTTTTGTCTCGTTTCTAggtaaaatatatagaatttcCTAAATCAAGAAGAATTTTCATTACAATTTTTTGCTTACCTCATTGTAAgcagattatttagcttgttcTGAGCAAAACGTCACCTAATTTTGACTTCTTTTCCTGAAAACAATACAAtacttttacttgtttaaaaaatccttcttgatgtaaggatttgtagatattttggctagaaacaagacaaaaagcatgttttgagGTGCATCTGTTTTGCTAAATTTATGaaggtaaaattaaaaacttttttaaacccCAAAAATGAGGTTTCtgccttatttttaatttttaatttaaagattcATAAATCAATAAGACACATTTACTTGAGGTGCAAAAGAAATGTCTTGAAGTGAGTTTGTGATTGAAACAAATATCTACCAGGGCACTCAGAAAACTGAGCTTCATTCAAAGAGGAAAACACTTTTAGATATTGATATAGATATTTGTTAgacattgttattttaagcataaaccaGTGTTTAAGCATAAACCAGCAGACTTCGTacctttgttttgcatctcaAGTCAATGAATCCTTATTTAAGAGTTTCTAGACATTTTCCTGTAAAAAAGAGACAAACATACTCATTAAGAACATGATTTTTGCAATGCACGcaacatttaatgccacaaatgaatgattcaatgcaTTCTAAAGGAAAGAATTATGATTGGAAGTTTCTGTAatacaacatattttaacatgcattacATACTTCACCTTTAACCATCATGTCCCTCCCCAAACAAAGACTCTTTAAGTTGCTGTGATTTACACATTGTGCCAATCTGACCGCGTTTCTTTTCTGTGTCTTGCGATTATGAATATACTACATCAGTCTGTTATGCGTGATTGACACGTGCATGTATTGTACATCTCTCTATGTTAAACAGCAACATCCTGTTACGGCTCCGA

Function

symbol description
ntrk1 Predicted to enable neurotrophin binding activity; neurotrophin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within defense response to bacterium; inflammatory response to wounding; and neutrophil mediated immunity. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease; hereditary sensory neuropathy; hereditary sensory neuropathy type 4; and schizophrenia. Orthologous to human NTRK1 (neurotrophic receptor tyrosine kinase 1).

NR:

description
high affinity nerve growth factor receptor-like isoform X2

GO: NA

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260297.1 True 4313 mRNA 0.47 17 19029066 19052616
XM_043260298.1 False 4310 mRNA 0.47 17 19029066 19052616

Neighbor

gene id symbol gene type direction distance location
LOC122360019 ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146 coding upstream 15827 19002551 ~ 19013239 (+)
LOC122360015 apoa2,LOC107592541,LOC107726689,LOC107688286,LOC107592191,LOC107728486,LOC107726687 coding upstream 43055 18984910 ~ 18986011 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding upstream 45961 18982089 ~ 18983105 (+)
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding upstream 249683 18762264 ~ 18779383 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding upstream 277380 18704403 ~ 18751686 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding downstream 161870 19214486 ~ 19240639 (+)
si:dkey-33i11.1 si:dkey-33i11.1,LOC107666767,LOC107726681,LOC107728459 coding downstream 198740 19251356 ~ 19259603 (+)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 209998 19262614 ~ 19273271 (+)
LOC122360453 NA coding downstream 240411 19293027 ~ 19296789 (+)
LOC122360927 LOC107666765,LOC107728460 coding downstream 252893 19305509 ~ 19307500 (+)
G114299 NA non-coding upstream 49194 18977551 ~ 18979872 (+)
G114132 NA non-coding upstream 140780 18766618 ~ 18888286 (+)
LOC122360693 NA non-coding upstream 203678 18821517 ~ 18825388 (+)
G114175 NA non-coding upstream 359879 18667845 ~ 18669187 (+)
G114172 NA non-coding upstream 364304 18663828 ~ 18664762 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding downstream 15986 19068602 ~ 19112727 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding downstream 43114 19095730 ~ 19156067 (+)
G114354 NA non-coding downstream 149778 19202394 ~ 19205964 (+)
G114345 NA non-coding downstream 193317 19245933 ~ 19248320 (+)
G114379 NA non-coding downstream 255648 19308264 ~ 19309214 (+)
G114131 NA other upstream 171636 18648545 ~ 18857430 (+)
LOC122360132 NA other upstream 187482 18827254 ~ 18841584 (+)
LOC122360692 NA other upstream 207930 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 267295 18758305 ~ 18761771 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other upstream 348973 18675560 ~ 18680093 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 145188 19197804 ~ 19253046 (+)
fxyd11 NA other downstream 227767 19280383 ~ 19283515 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other downstream 231145 19283761 ~ 19292881 (+)
G114382 NA other downstream 274488 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 591213 19643829 ~ 19647806 (+)

Expression


Co-expression Network