LOC122360019 (ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146)


Basic Information

Item Value
gene id LOC122360019
gene name ntrk1,LOC107728446,LOC107592455,LOC107688245,LOC107671431,LOC107592146
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19002551 ~ 19013239 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260301.1
TCTAACAGGTGGAGCTCTTGAGAGGTAGTGAGAGGAGGAGAGCTCAATAGCTCAGTTCCTGGATGGGATCATAACCCTGAGTGCTGGCCAAGAGAAGAGCCGCTTCTCCTCACGTCCAGAGTTGCTGCTGCAGGGTGGAGTTTCTCCCAGGATAACAAAACTCACTCGAACCCCACCATGGCTGACCGTAAGGTGGCCCCGGTTGCGGTTGCGCTTCTCGTCCTGGTCGCGCCAGCCCTGAGCGGATGCCCAAGCGCCTGCCGCTGCTCCTTCGCCATGCTTCAGTGCCTGGAGCCGGACGGAATCAGCAGCATCCCCGCGCTGGCGGCGCAGGAGAGCGAAAACGTCACTGAAATATACATAGAGGGTCAAACCAACCTGGAGAACATCACAGATGTAGACCTCCCCAACTACAGAGAACTGAAGAACCTgACGGTCACATATTGTGGGTTGCTGTACATCTCCGAAAATGCCTTCCAGCATAATTTCAAGCTGCAGTATGTAAACCTGGCCTTTAATTATCTGGCGCACATCAGTTGGAGAGTGTTCCAATCAGTCCCTCTGTTGAGTCTAGTCTTGAGGGACAATTCGCTCACCTGCTCGTGTGACATTTACTGGCTTCAGCAGTGGcacagaaaaagacaaagtgACGCTGATTCTCAACAAACCTGCATCCACAACGGCAACAGCATTCAGCTGGATTCATTTGAAATGGATAACTGCAGTATTCCCGAGGTCACAATTCACCCCTCAACACTGACCACTCAAGAAGGTGGAAATCTGACATTCACCTGTCTGGTGACAGGAGTACCAACACCGGTGATCCGCTGGAGAACAGAGCACCTACAGTCCAACTGGACCCTGCAGCGAGGAATCTGGGGATCAAGCCTGGAGCTGATTCTGTACATGAGGAACGTTTCTTCTGGAGACAACCTGCACAACCTCACCTGTGAGGCGGAGAACCGGGCAGGAATGGGAGAAGCCGTGGTGCAGCTGGACATTGAATTTCCAGTGCGGATCTTGTTTCTAAAGGACCCAGAGCCGCAACATCACTGGTGTTTCCCATTCGCTGTGGACAGCAATCCTCCCGCCAGCATCAGATGGCTGTACAACAACCTGCCTCTCATTGAAACACGTTACTCCTACACCGAACTCATCCGAGATGACGGCTCCATTCAATACGGCTGTCTGTTCCTCAACAAGCCCACGCACCTCAACAATGGCAACTACACGCTCATCGTGGAGAACAAACTGGGCAGAGACCAGGCTACATGCTACGGGAAGTTCATGGACAATCCTTTTGACCCCTCTGACCCGGAGGGCATCATTCCTGCACTGATAAAAGTGTTTCGcttgatttacttaaaaaatatgatgaatttttttgcataattatataTCGTAGTTGAAACAAGACTAGTCTTTGTACAAACTACATAATTTTACggtttgttgaaataaaatttgcacataaagttaacttaa

Function

symbol description
ntrk1 Predicted to enable neurotrophin binding activity; neurotrophin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within defense response to bacterium; inflammatory response to wounding; and neutrophil mediated immunity. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease; hereditary sensory neuropathy; hereditary sensory neuropathy type 4; and schizophrenia. Orthologous to human NTRK1 (neurotrophic receptor tyrosine kinase 1).

NR:

description
PREDICTED: high affinity nerve growth factor receptor-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0005030 neurotrophin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260301.1 True 1485 mRNA 0.50 8 19002551 19013239

Neighbor

gene id symbol gene type direction distance location
LOC122360015 apoa2,LOC107592541,LOC107726689,LOC107688286,LOC107592191,LOC107728486,LOC107726687 coding upstream 16540 18984910 ~ 18986011 (+)
LOC122360014 apoa2,LOC107728486,LOC107688286,LOC107726689,LOC107592191,LOC107726687,LOC107671415 coding upstream 19446 18982089 ~ 18983105 (+)
LOC122361002 atad2,LOC107719139,LOC107666826,LOC107686264,LOC107714334 coding upstream 223168 18762264 ~ 18779383 (+)
LOC122360227 LOC107592439,LOC107714343,LOC107666800,LOC107719142 coding upstream 250865 18704403 ~ 18751686 (+)
LOC122360773 LOC107666789,LOC107600495,LOC107705096 coding upstream 318036 18683319 ~ 18684515 (+)
ntrk1 ntrk1,LOC107688245,LOC107592455,LOC107592146,LOC107671431,LOC107728446 coding downstream 15827 19029066 ~ 19052616 (+)
rgl2 rgl2,LOC107666852,LOC107726673,LOC107665651 coding downstream 201247 19214486 ~ 19240639 (+)
si:dkey-33i11.1 si:dkey-33i11.1,LOC107666767,LOC107726681,LOC107728459 coding downstream 238117 19251356 ~ 19259603 (+)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding downstream 249375 19262614 ~ 19273271 (+)
LOC122360453 NA coding downstream 279788 19293027 ~ 19296789 (+)
G114299 NA non-coding upstream 22679 18977551 ~ 18979872 (+)
G114132 NA non-coding upstream 114265 18766618 ~ 18888286 (+)
LOC122360693 NA non-coding upstream 177163 18821517 ~ 18825388 (+)
G114175 NA non-coding upstream 333364 18667845 ~ 18669187 (+)
G114172 NA non-coding upstream 337789 18663828 ~ 18664762 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding downstream 55363 19068602 ~ 19112727 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding downstream 82491 19095730 ~ 19156067 (+)
G114354 NA non-coding downstream 189155 19202394 ~ 19205964 (+)
G114345 NA non-coding downstream 232694 19245933 ~ 19248320 (+)
G114379 NA non-coding downstream 295025 19308264 ~ 19309214 (+)
G114131 NA other upstream 145121 18648545 ~ 18857430 (+)
LOC122360132 NA other upstream 160967 18827254 ~ 18841584 (+)
LOC122360692 NA other upstream 181415 18808744 ~ 18821136 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other upstream 240780 18758305 ~ 18761771 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other upstream 322458 18675560 ~ 18680093 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other downstream 184565 19197804 ~ 19253046 (+)
fxyd11 NA other downstream 267144 19280383 ~ 19283515 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other downstream 270522 19283761 ~ 19292881 (+)
G114382 NA other downstream 313865 19327104 ~ 19328763 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 630590 19643829 ~ 19647806 (+)

Expression


Co-expression Network