pkdc (si:ch211-215k15.5,LOC107737834,LOC107592943,LOC107686716)


Basic Information

Item Value
gene id pkdc
gene name si:ch211-215k15.5,LOC107737834,LOC107592943,LOC107686716
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20386077 ~ 20387616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260302.1
GCTCCGTATACCGGAAGATGGTCCCTCATTCTCGCCGTCTTTTGAAGAACACGTTTCACTTCAAGATACGTAAGTCTCCAGAATGAAGCAGGAACACGAAGACCTCGTTTTAAAAGCATGCGGAGCAAAGTCCCTGCAGACCGGAGCAAAGATTCAGACTTTGTGGAGCGGTTATGGTGAAATATTACGAGTCCACTTGGAGGGATGTGACAGTCCCTCTGTGGTTGTCAAACATGTGATGTTTCCCCAGAACCAGAAACATCCAGGGGGCTGGAACACGGACATATCTCACCAGCGCAAAGTGAGATCCTATCAAATAGAAAGTCACTGGTACCAAAACTACACGACCAACGAACGCTGCAGAGTTCCCTCTTGTCTCGCTGCCCAGTCATTTGGTGATGAGCAGTTGATTGTTTTGGAGGACCTTGATGTTGCAGGATTCCCTGTGAGAAAAAACTACGTTAACGATGCTGAAACAAAGGCCTGCCTCAGCTGGATTGCCAACTTTCATGCGCTTTTCCTCAATGTCACCCCAGAAGGACTTTGGCCTATAGGCACATATTGGCATTTAGAAACAAGGCCTGAAGAGCTAGAAGCCATGTCAGATCAAAAACTCAAAGCAGCTGCTGCAGAGATAGACAGCGTCCTTAACAACTGCCGCTTTAAGACTATTCTGCACGGCGATGCAAAACTAGCTAATTTCTGCTTCTCCAAAGATGGTTTACAAGTTGCAGCCGTTGATTTTCAGTATGTTGGTGGAGGGTGTGGGATGAAGGATGTGGTTTATTTTTTGGGCAGCTGCATGGATGAGAAGGAGTGTGAAAAGAGAGTGCCTGGCTATCTGGATCACTATTTTTCAGAGCTGCGGAGATCCTTGGACGAGAAGGCCAGCTTTCCGGAGCTGGAGAAAGAGTGGCGTAGCATGTTTGCTTTCGCTTGGACTGACTTTCATCGCTTTCTCCTTGGATGGATGCCAGGTCATCACAAGATTAATAAGTATAGCAAAAGACTCACTCAGGAGGTTTTAAACAAATTGAAGCAATCTCAATCGATCTGaaacacagaggaaaaaaatatatggcttgacttttataataacaaaatacactGGACTGTAAAGGATTTTTGAGGCTGTATCGCACAACTCACAATGATTTCAGAACTGGCTTTATTCTGTATGCAGTGAGCACTTCATTGTGagattaaaacatattttgga

Function

NR:

description
uncharacterized protein LOC110486949

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260302.1 True 1219 mRNA 0.45 2 20386077 20387616

Neighbor

gene id symbol gene type direction distance location
herpud2 herpud2,LOC107686057,LOC107600485,LOC107719122,LOC107592253,LOC107737813 coding downstream 621 20379180 ~ 20385456 (-)
dpy19l1l dpy19l1l,LOC107666881,LOC107719125,LOC107592414,LOC107737812,LOC107686065,LOC107592262 coding downstream 72838 20305818 ~ 20313239 (-)
si:ch211-135n15.2 LOC107719151,LOC107592495,LOC107666737,LOC107714311,LOC107686628,LOC107592633 coding downstream 121187 20260835 ~ 20264890 (-)
polr3glb polr3gl,polr3glb,LOC107666760,LOC107714326,LOC107592290,LOC107686116 coding downstream 142512 20239132 ~ 20243565 (-)
rundc3b rundc3b,LOC107666772,LOC107686653,LOC107719153 coding downstream 231429 20139412 ~ 20154648 (-)
si:ch211-215k15.4 LOC107666815,LOC107600540,LOC107719123 coding upstream 1858 20389474 ~ 20391866 (-)
fli1rs fli1b,LOC107600493,LOC107719147,LOC107666785,LOC107685964,LOC107592185 coding upstream 192666 20580282 ~ 20592827 (-)
si:ch211-225p5.8 LOC107686707,LOC107592124,LOC107666781,LOC107719166,LOC107737837,LOC107600541 coding upstream 216473 20604089 ~ 20607902 (-)
mtdhb LOC107666798,LOC107717360,LOC107600499,LOC107668302,LOC107592090 coding upstream 293809 20681425 ~ 20686877 (-)
ubxn11 LOC107600501,LOC107592913,LOC107713843,LOC107668295 coding upstream 312381 20699997 ~ 20706330 (-)
G114768 NA non-coding downstream 80633 20302983 ~ 20305444 (-)
G114747 NA non-coding downstream 140838 20245021 ~ 20245239 (-)
G114718 NA non-coding downstream 141924 20174163 ~ 20244153 (-)
G114741 NA non-coding downstream 168496 20216103 ~ 20217581 (-)
G114663 cldn12,LOC107682396,LOC107686255 non-coding downstream 281807 20101044 ~ 20104270 (-)
G114798 NA non-coding upstream 87901 20475517 ~ 20475747 (-)
G114801 NA non-coding upstream 96185 20483801 ~ 20484071 (-)
G114803 NA non-coding upstream 97780 20485396 ~ 20485725 (-)
G114804 NA non-coding upstream 98279 20485895 ~ 20486127 (-)
G114853 NA non-coding upstream 112904 20500520 ~ 20520126 (-)
G114715 NA other downstream 208319 20166795 ~ 20177758 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 728353 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 964983 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1564967 18812238 ~ 18821110 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other downstream 1687670 18684573 ~ 18698407 (-)
G114793 NA other upstream 54349 20441965 ~ 20452450 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 248509 20636125 ~ 20650937 (-)
G114901 NA other upstream 264361 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 624991 21012607 ~ 21017105 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 988274 21375890 ~ 21378836 (-)

Expression


Co-expression Network