prdm13 (prdm13,LOC107716819,LOC107700751,LOC107704864,LOC107711749)


Basic Information

Item Value
gene id prdm13
gene name prdm13,LOC107716819,LOC107700751,LOC107704864,LOC107711749
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23623739 ~ 23628860 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260469.1
CATAAGAAAAGCCGGATCACACACGCCACCGCGTCACTTGGCGGGCGGATATTAGTCTGTCCTCATCTCAGACTCTCTGCTCATCTCAATCAGCGCCTGCTCGGTCTTCCTGGTTCGGATAGCGCAGCCCCACACAGAGCCAGCCATGCAAGCGCCTCGGACACCCACTATCAGCGTGTTCGCCGACTGCAGCATCCCAGCCGGGCTTCGGATAGGACCGGTCCCGGGCATCTTCAAACTGGGGAAGTATGTTTCGGACCGCAAGGAAGCTGGAGTGAAAAAGAAGGTTCGTTTGGTGAGGGGAGAATTCGTGGATGAATCCGGCAGCGCGGTTCCGGATTGGATCGGTTTAATACGCGCGGCCAGGAACAGTCAAGAACAGAACCTCGAGGCCGTCTCGGATTTACCTGGAGGACAGattttCTACCGCGTGCTGAGAGAAATACAGGCTGGAGAAGAGCTGAGTGTGTGGTATTCCAGCGCGCTGGCGCAGTGGTTCGACATTCCCACGACGGCTACTCCGACACACGACGAAAAAGGAGAGGAGCGCTACATTTGCTGGTACTGCTGGAGAATATTCAAATACCCGAACACCCTGAAAGCTCACGTGCATTTCCACTGTGCGTTGAGCAACGGCAGAAGTTTGGTGAGCAACGAGCAAGCTAGAGGCACGGACAACTTTAACAGATCTCCGAAATCAGGGGACATCCCAAACGCGTCCTCCTCTCCGCGGAACGGCCACAGCACCTTTATGCCGGACGCGGTGAAACGGGTCGTGTCCACCCCACCTTTCGCCAATAAAGTGGGACTAACGAAAAAACCGAGCGCGGAGGAGCAGGACAGAGCCCTTGACATGAGCGTGACCTCCGCCAGAAGCACCGGACACATACTGGGCCTCGGCGGGACATCCTCTGTGCTCAACAGCATGGGTTTCCACCCAGGCGTGCGCTCTGCTTTCAAACCAATGGGACTTTCGAAGATCTCCCCGGCCGATGTCGCGAGAGACGAGGCTAACGGGAAACCAAACAGTATGGGGTTCGGCAAGCTACTGGGGAACATCAAGTCACCTCTACCTAGCGTGCATCCCTCAAAATGCGCGCACCCCATGGAGAGCTCGCCTCCCGTGATCCCCTGCGCGAACAACATCCGCGGCTTTCCTCTGCTGCCCCATTTCGAGGAGACGTCCGCTTTCAAGCACGTGGACAGCCGCATGCACCCCGCCCTGTCCCCCTCGCGCTACTCCCAGCTTCCGGCCGGCTTTCACTTCGAGAGGTTCTCCTTGCCACAGTTCGACGGGGGGAAATCCTACAACGGGGACTGCAACATACCCCTCATGCCGTTCACCGTTTACAACGGAGAGCTCCTTTATAGCTCCCCGTACTACCCTCTTAAATTTCACTTCGGCAACCTGCTTAAATACCCAGACTACTTCGGCGCACCGGCTCTGAATCCAGATCTAAACGCCATAACGAACATCGACAGGGAGATAGCGATGCACACGCAACAGCTGTCCGAAATCGCCGTAGAGAAGAACCGTTCACGACTGGAGTCTCTGCCCGCGTCCAACCCCAACTCGGGCAAGCCAAAAAAGGGACATCTGTGCCTATACTGCGGCAAACTGTACTCTCGAAAATACGGTCTGAAGATTCACATGAGGACTCACACGGGCTACAAACCGCTCAAATGTAAAGTGTGCTTCAGGCCCTTCGGCGACCCCAGCAATCTCAACAAACACATCAGACTGCACGCGGAGGGAAACACGCCCTACAGGTGCGAGTTCTGCGGGAAGGTGCTCGTGCGCAGGCGGGATTTGGAGAGGCACGTCAAATCGAGGCATCCGGGTCAGAGCATCAAAAAGTCCGACGACAAAATCGAGGGCATCTTCGAGGACGGCGAACAAAAAAGCGACAACGACAGCGACGTCGACGTCTGCTTCACGGACGACCAGAGCGACCAGGAATCGAGCAAACACAATGATTAACGGACCGGTTTCTGGACGTGCTCAAACGGACTTTGCTCTCAAGTAGCTAAATTATGCATGTACATAAATTAGTTATGAatcgtttgtttattttataaaattatcgTGGACAGAAAACCTCGCGGAAGCAGATGTTCCCCTAgtgaattaaatcattttgtgaaAGAGGCGCTCGTAATGTTCGTCTCGCGACATGCTTATTGGTATCGAGGACATCTCTGCACCCCCAATGTGGAGCTGCACTTTATAAAGACGGGTTAATGCCATAAAACACGAGTTtgcgttattattattaagatgtCGGACCGTTTAAATTTACCTGTCAGATCCGCACTTTTATTACCAAAAGCATTTATcacattctgtaaaaaaaaaaagaatatcttTGCAGAACAACGGGCACctaccaat

Function

symbol description
prdm13 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human PRDM13 (PR/SET domain 13).

NR:

description
PR domain zinc finger protein 13-like

GO: NA

KEGG:

id description
K24645 PRDM13; PR domain zinc finger protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260469.1 True 2392 mRNA 0.53 4 23623739 23628860

Neighbor

gene id symbol gene type direction distance location
zgc:172323 zgc:172323,LOC107587895,LOC107700752,LOC107716818,LOC107711723,LOC107683363,LOC107577100 coding upstream 4914 23615078 ~ 23618825 (+)
pou3f2b pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 coding upstream 100463 23520144 ~ 23523276 (+)
klhl32 klhl32,LOC107704937,LOC107700760 coding upstream 232845 23369980 ~ 23390894 (+)
LOC122360146 LOC107716840,LOC107704933,LOC107587774,LOC107700761,LOC107552831 coding upstream 271139 23347978 ~ 23352600 (+)
gprc6a LOC107716809,LOC107587859,LOC107711720,LOC107552792,LOC107704834,LOC107700677 coding upstream 286900 23330223 ~ 23336839 (+)
prss35 LOC107704868,LOC107730928,LOC107716822,LOC107716824,LOC107730929,LOC107597124,LOC107587853 coding downstream 116670 23745530 ~ 23752036 (+)
akirin1 akirin1,LOC107700743,LOC107730931,LOC107704951,LOC107597130 coding downstream 194828 23823688 ~ 23831522 (+)
rhbdl2 rhbdl2,LOC107716826,LOC107704870,LOC107597139,LOC107730925,LOC107700688 coding downstream 203090 23831950 ~ 23835923 (+)
gja9a LOC107587758,LOC107716827,LOC107730936,LOC107704871,LOC107700742 coding downstream 207194 23836054 ~ 23841877 (+)
rragca rragc,rragca,LOC107700741,LOC107704952,LOC107716860,LOC107730935,LOC106605136 coding downstream 215565 23844425 ~ 23851478 (+)
G115718 NA non-coding upstream 47091 23572973 ~ 23576648 (+)
G115714 faxcb,LOC107700756,LOC107716849,LOC107587769,LOC107711729,LOC107552822 non-coding upstream 55685 23555621 ~ 23568054 (+)
G115706 faxcb,LOC107587769,LOC107704942,LOC107716849,LOC107700756,LOC107711729,LOC107552822 non-coding upstream 63815 23535480 ~ 23559924 (+)
G115462 NA non-coding upstream 357270 23265472 ~ 23266469 (+)
G115422 NA non-coding upstream 480281 23141073 ~ 23143458 (+)
G115730 NA non-coding downstream 36406 23665266 ~ 23677259 (+)
G115747 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 non-coding downstream 88991 23717851 ~ 23815099 (+)
LOC122360295 NA non-coding downstream 157968 23786828 ~ 23802584 (+)
G115782 NA non-coding downstream 227823 23856683 ~ 23856949 (+)
G115784 NA non-coding downstream 229356 23858216 ~ 23858551 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 11346 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 264960 23274989 ~ 23358779 (+)
G115449 NA other upstream 369173 23251382 ~ 23254566 (+)
rps9 rps9,LOC107587787 other upstream 399811 23222050 ~ 23223928 (+)
wnt4b wnt4b,LOC107704912,LOC107552850,LOC107587793,LOC107671942,LOC107724774,LOC108443656 other upstream 454062 23164566 ~ 23169677 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other downstream 187064 23815924 ~ 23822446 (+)
LOC122360598 NA other downstream 1144959 24773819 ~ 24832618 (+)
G116057 NA other downstream 1374402 25003262 ~ 25057168 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 1924003 25552863 ~ 25554807 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 2089660 25718520 ~ 25778407 (+)

Expression


Co-expression Network