ndufaf6 (ndufaf6,LOC107717382,LOC107591959)


Basic Information

Item Value
gene id ndufaf6
gene name ndufaf6,LOC107717382,LOC107591959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21346657 ~ 21354616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260619.1
CAGGGGAGTTGTAATATGACGCACACGCAGGAGGAGGTACGGCTCAAGGATACCGCTAGGTGCATGAGGTTTGTAATGGCATCTGCTATAAACATAAGGAATGGACTTTTTGCGACCAGGGGTTCTCTCCACAAAAAGATTTCCTGTCCCACGTTTACGCAGAAGCCATCGGAGATCAAATGCACGAGAGCATTAACAAATTCGACAGGACAGCACAATGAACAGTACTGTATTAATGTGGTAAGGAAGAGGGACTATGAGGGATTTTTGTGTTCGTTGCTTTTTCCTGAGGCTGTTCGTCGATCTGCGCTGGCACTGAGGGCCTTCAATGTAGAACTGGCACAGATTAAGGACTCCGTTTCTCAGAAAACCATCGGTTTAATGCGAATGCAGTTTTGGAAGACCGCCGTAGAGGATATTTACAGAGATGACCCTCCAGTCCAGCCTGTCAGTGGAGAACTGTGGAGGGCAGTGAGGAAGCACACATTAACAAGGAGATGGATGTTAAGAATTATATCAGAAAGAGAGAAGGATCTGGAGGACAAAGCCTACAGGAACCTTCAGGAGCTGGAGTCCTATGGTGAAAACACACAATCCTCTCTTCTTTACCTGCTGCTGGAGACACTTGGCGTGAGAAATGTCCACGCAGACCATGCCGCAAGCCACATCGGCAAAGCCCAGGGCATCCTGACCTGCCTTCGGGCGACCCCCTACAACAGCAGCAGACGCAAGGTCTACCTGCCCATGGACATCTGCATGCTGCATGGAGCGTCTCAAGAGGATTTCATCCGTGGCAGCAGGGACCAGAACGTGAGGGACGTCATTTATGACATCGCCAGCCAAGCCCATGTCCATCTCCAGCACGCTAGATCCTTCAGCCAGAACGTTCCACATGCAGCCATGCCTGCCTTCCTGCAAACGGTTGTTCTGGAGGACTACCTGCAGAGAGTGAGGAAAGCAGACTTTGATGTGTTTCACCCCAGCCTACAAAAGAGGAACCCAATGCTGCCCCTTCAGCTCTATATACGATCATGGAGAAagatgtattaattaatttaattaaatcaacatcTGATTGTTTCAGATGAGCTCCTTGTCAAACAAATCAAGCAGTTGTAATAAATTATCTACCTTCTTTACGCTC

Function

symbol description
ndufaf6 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Fanconi renotubular syndrome 5 and nuclear type mitochondrial complex I deficiency 17. Orthologous to human NDUFAF6 (NADH:ubiquinone oxidoreductase complex assembly factor 6).

NR:

description
PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like isoform X1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K18163 NDUFAF6; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260619.1 True 1144 mRNA 0.48 10 21346657 21354616

Neighbor

gene id symbol gene type direction distance location
si:dkey-22o22.2 si:dkey-22o22.2,LOC107666790,LOC107717379,LOC107668308,LOC107592533,LOC107713796,LOC107600533,LOC108437325,LOC108272818 coding upstream 32203 21210852 ~ 21314454 (+)
kcnv1 kcnv1,si:dkey-201i6.2,LOC107717377,LOC107666889,LOC107668317,LOC107713815 coding upstream 189608 21147757 ~ 21157049 (+)
ptpn23a ptpn23a,ptpn23,LOC107666802,LOC107717372,LOC107668297 coding upstream 228967 21107087 ~ 21117690 (+)
cmtm6 LOC107717369,LOC107600546,LOC107666873,LOC107668282,LOC107713799 coding upstream 562216 20778080 ~ 20784441 (+)
cmtm7 cmtm7,LOC107666776,LOC107717357,LOC107668286,LOC107600545,LOC107592881,LOC107713818 coding upstream 572279 20770464 ~ 20774378 (+)
plekhf2 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 coding downstream 10723 21365339 ~ 21378842 (+)
LOC122360960 NA coding downstream 38226 21392842 ~ 21405824 (+)
si:dkey-29b11.3 LOC107730210,LOC107600552,LOC107668293,LOC107713830,LOC107567766,LOC107668280 coding downstream 296892 21651508 ~ 21654059 (+)
rbms3 rbms3,LOC107730162,LOC107668303,LOC107713827,LOC108434201 coding downstream 349108 21703724 ~ 21822473 (+)
gpd1l gpd1l,LOC107600618,LOC107705153,LOC107666803,LOC107551192,LOC107713825,LOC108434205,LOC103034694 coding downstream 607604 21962220 ~ 21968547 (+)
G115020 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 non-coding upstream 177304 21167994 ~ 21169353 (+)
G114983 NA non-coding upstream 204627 21141042 ~ 21142030 (+)
trnae-cuc_37 NA non-coding upstream 207705 21138881 ~ 21138952 (+)
LOC122360615 scap,LOC107666822,LOC107600505,LOC107668298,LOC107591983,LOC107717374,LOC107713836 non-coding upstream 214552 21129128 ~ 21132105 (+)
G114978 NA non-coding upstream 226125 21118149 ~ 21120532 (+)
G115074 NA non-coding downstream 36165 21390781 ~ 21391162 (+)
G115134 NA non-coding downstream 338878 21693494 ~ 21694544 (+)
G115157 NA non-coding downstream 473600 21828216 ~ 21829531 (+)
G115200 NA non-coding downstream 642394 21997010 ~ 22001617 (+)
G115288 NA non-coding downstream 1172541 22527157 ~ 22530262 (+)
siglec15l NA other upstream 576265 20767278 ~ 20770392 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other upstream 1041973 20267541 ~ 20304684 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other upstream 1119580 20219644 ~ 20227077 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other upstream 1698851 19643829 ~ 19647806 (+)
G114382 NA other upstream 2017894 19327104 ~ 19328763 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 495373 21849989 ~ 21872972 (+)
stt3b stt3b,LOC107668300,LOC107666808,LOC108434203,LOC107713794 other downstream 529293 21883909 ~ 21921531 (+)
G115193 NA other downstream 622501 21977117 ~ 21979368 (+)
LOC122359863 aldh5a1,LOC107704994,LOC107705391,LOC107700704,LOC107588482,LOC107755744,LOC107556105 other downstream 1554919 22909535 ~ 22915477 (+)
LOC122360067 calb1,LOC107704882,LOC107588486,LOC107556079,LOC107700706,LOC106580458 other downstream 1609953 22964569 ~ 22975774 (+)

Expression


Co-expression Network