LOC122360278 (LOC107728464,LOC107666853,LOC107728467,LOC107666779,LOC107686805,LOC107592514,LOC107728451,LOC107666749)


Basic Information

Item Value
gene id LOC122360278
gene name LOC107728464,LOC107666853,LOC107728467,LOC107666779,LOC107686805,LOC107592514,LOC107728451,LOC107666749
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19342339 ~ 19348454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260727.1
gagaaaaagattaaaaagaggAACATTTACTGTCAACAGAACAATGTCCGGGTGTGGTGAAACAATCCTTACATGAGTTTCATCAAAGTAAGCATAAAACCGGTGTTTCTTGCAGTCACAGAATTTAATGAAAGCAATGGAAAAGTTCACTCCTCCCCTACAACCTATAACTCACCTCCCATTTGCTGGCAACTTTCATCAGTACATAAAAGACTGAACCGGAGTACAGTATCACATACATTGCTGCAGATCACAACGCAAAGGAAAGACCAATAATCAGAAGAATGGATGCGAGCCACTCTTTCAACCAGCCTCCAGGGGATTCAAATCCATCTGAAAAATCAGGAATGGCTGGAGCAGCACCACCAGCATATCAGCACAGTCCTGCTGGATATCCTCCTTCCTTTCCGATACAGCCGGTCCCACAGGGCCCCTACAACCAGGGACCATATCCAGGACAAACTGTGGTCGCTGCGCAGCCTGCGGTTTTTGTGACCGCCGCTCCACTGACCAATCCATTGCCAGATTACCTGGGTTACTCCATCTTCACCATGCTGTGCTGCTGTTTGCCTCTGGGCATTGCTGCGCTGATATACTCCATCTCTACTCGAGACGCAAACTACTCAGGTCAGCGAGAATTAGCTGAGAAGAACTCCAAAACGGCACTCATCCTGAATCACATCGGCCTTGGTATTGGCCTCGTTGTCATTGTATTGATCATTATCACCCAGATTGTGATTTTTACTGCTAGATAAAAGCTGTTAGAGTTGACATGGTTGGATGAAGATTACAAACAGacgttttctgtattttaaatgttacttattatattaatatttctgtgtaaGTTATTGACATCAATGCAGAAGCATTTGAGCGtgcttttacaaaaataattcactCCACTATTTTTTTACGTGTTTGATCTATTGTCTGAagctaatgcattaaaaaaatcccaCGCATCGATCCCATGCATTGTGATCCACTTCCTGAATGATTCAACACTGtggtaaaattaaatgttgtgagaaacattttttatatatataaataaataaattattttattttattttttatttggagGAATGCCACTGTCTTAAAAATAGGCCATCCTCAGAATGTTAAAACTGATACAACATGGCACATTGTGAAAGGCAGATAAAAACTTTACTGCTGCCGTGACAAATGTGTCTTACCCTTAACAGTAAccctaaaacaacaaaaataccaTAAGTAGTGTCAGAAGCATAAAAGGAAGCTACCTccagttttaatatattgtgtaaCACTAAACTACAATGTAATAATTCAACTCGAACTTAATAGAAATATCAGCCTGACATTTATTAGACTAATGCAGACACTTTTAATTAAAGTCTGGATCCAAAGATCGGAGATGACCGAACACCTGATCCGGACCCTTCAGAGGACCTCAGATGATGCCAACTCTGAACCAGCACACAAAactattacttattattttctGTCAAGCTGCTTTGCATTTGTATTGTGAAAAGCATTAAAGAAACGCAAACTGCACTGAATATA
>XM_043260729.1
GCCGCGATGCCAAACTCCTTCATAAAAGAAGAAAGCTGTACAGCTGTGACGACAAGCACTTATCAGGATCAACTAAACGctggattttcaaaagtatgtgaaatcTTTCAATTTTGCAACATAGATTCTTTAAAATATGCCCGAGAGTTTTACACACTGGTCTGTTGTGGTGGTGACATTTCTACATCCATAAACTTGATGCGCCACGAAACAAAATGTGATTGGTTTCTTCACCTGTCAGTCAAATGGACTCTAGGCTTTTTAAAGCAGATCAGACTGAAGGTCTGGCTGCACGAGACTAAGAGACAGCACATCAAGTACAAAAATCTAAGCAGCAAAACCATCTTACGCCACTACTACATTTATGACCTTTTGGTCACATGACTTTGTAATTCCAAGGTGACAACACATGACATTCTACTGGTTGTCTAAATTAAGTGTTTCTATCAACACTATCAACACCAAAGCCCTCACATGCTCCTGAACATGTAAACTTGAAATGTTCTGAGTTACCATGTGACCACCACTGGGTTCATCTCTAAGTTTGGCAACATCTTGTGAAAGACAATAACTCTAAGTCTGACAACATGTAAAGCTGTCATCTTGGAATTATTGTAATTACGACATAGTGTAAACACAACGTTACTGGAAAGTGTAAATCTGTCCTCCCACAGTAGGTCCTTCGCAGGAGTATGGCAGATTTCCCCCTGGCCCCCTATTTTACGAATGGTGTAAAGTAATTTAACagaaattcattattaatagacagacagacattgaTACAGAAAAGGTTATTATAACCCAagttgaaatgaataaatgtaatccAATGCTGACAGGGTGATgagaaaaagattaaaaagaggAACATTTACTGTCAACAGAACAATGTCCGGGTGTGGTGAAACAATCCTTACATGAGTTTCATCAAAGTAAGCATAAAACCGGTGTTTCTTGCAGTCACAGAATTTAATGAAAGCAATGGAAAAGTTCACTCCTCCCCTACAACCTATAACTCACCTCCCATTTGCTGGCAACTTTCATCAGTACATAAAAGACTGAACCGGAGTACAGTATCACATACATTGCTGCAGATCACAACGCAAAGGAAAGACCAATAATCAGAAGAATGGATGCGAGCCACTCTTTCAACCAGCCTCCAGGGGATTCAAATCCATCTGAAAAATCAGGAATGGCTGGAGCAGCACCACCAGCATATCAGCACAGTCCTGCTGGATATCCTCCTTCCTTTCCGATACAGCCGGTCCCACAGGGCCCCTACAACCAGGGACCATATCCAGGACAAACTGTGGTCGCTGCGCAGCCTGCGGTTTTTGTGACCGCCGCTCCACTGACCAATCCATTGCCAGATTACCTGGGTTACTCCATCTTCACCATGCTGTGCTGCTGTTTGCCTCTGGGCATTGCTGCGCTGATATACTCCATCTCTctcgcatcaagttcaaggcactgatgcttgcatatagaacaaccacagactcggcaccgg

Function

NR:

description
PREDICTED: synapse differentiation-inducing gene protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260727.1 True 1554 mRNA 0.39 2 19343184 19348454
XM_043260729.1 False 1510 mRNA 0.43 2 19342339 19345560

Neighbor

gene id symbol gene type direction distance location
LOC122360969 NA coding upstream 16796 19323031 ~ 19325543 (+)
LOC122360047 LOC107666749,LOC107686570 coding upstream 30592 19309372 ~ 19311747 (+)
LOC122360927 LOC107666765,LOC107728460 coding upstream 34839 19305509 ~ 19307500 (+)
LOC122360453 NA coding upstream 45550 19293027 ~ 19296789 (+)
hpn hpn,si:dkey-33i11.3,LOC107728492,LOC107726693 coding upstream 69068 19262614 ~ 19273271 (+)
LOC122360279 LOC107666755,LOC107728493 coding downstream 3652 19352106 ~ 19354160 (+)
gapdhs gapdhs,LOC107666830,LOC107577408,LOC107709572,LOC107686531,LOC107728487 coding downstream 21880 19370334 ~ 19382363 (+)
tmem147 tmem147,LOC107666831,LOC106605633,LOC107686556 coding downstream 34907 19383361 ~ 19387604 (+)
sult2st3 LOC107666756,LOC107592535,LOC107686539,LOC107709748,LOC107556976 coding downstream 42333 19390787 ~ 19393501 (+)
ncam3 LOC107666890,LOC107686492,LOC107709588,LOC107728453,LOC107556979 coding downstream 57626 19406080 ~ 19417139 (+)
G114379 NA non-coding upstream 33125 19308264 ~ 19309214 (+)
G114345 NA non-coding upstream 94019 19245933 ~ 19248320 (+)
G114354 NA non-coding upstream 136375 19202394 ~ 19205964 (+)
G114328 LOC107688248,LOC107665647,LOC107592452,LOC107592176 non-coding upstream 186272 19095730 ~ 19156067 (+)
G114316 syngap1b,LOC107592176,LOC107688248,LOC107592452 non-coding upstream 229612 19068602 ~ 19112727 (+)
G114520 dpys,LOC107728457,LOC107686378,LOC107666745 non-coding downstream 299450 19647904 ~ 19648864 (+)
G114556 NA non-coding downstream 330929 19679383 ~ 19679686 (+)
G114558 NA non-coding downstream 333686 19682140 ~ 19682452 (+)
LOC122360931 NA non-coding downstream 354271 19702725 ~ 19719929 (+)
LOC122360959 NA non-coding downstream 661099 20009553 ~ 20010093 (+)
G114382 NA other upstream 13576 19327104 ~ 19328763 (+)
fxyd3 fxyd1,plm,LOC107592153,LOC107728489,LOC107592449,LOC107665652,LOC105891849 other upstream 49458 19283761 ~ 19292881 (+)
fxyd11 NA other upstream 58824 19280383 ~ 19283515 (+)
G114352 LOC107726675,LOC107592148,LOC107665654,LOC107592451,LOC107728449 other upstream 89293 19197804 ~ 19253046 (+)
LOC122360132 NA other upstream 500755 18827254 ~ 18841584 (+)
LOC122360533 dcstamp,LOC107556953,LOC107592504 other downstream 295375 19643829 ~ 19647806 (+)
hjv hfe2,LOC107719159,LOC107666758,LOC107714319,LOC107592274 other downstream 871190 20219644 ~ 20227077 (+)
slc4a7 slc4a7,LOC107666816,LOC107686077 other downstream 919087 20267541 ~ 20304684 (+)
siglec15l NA other downstream 1418824 20767278 ~ 20770392 (+)
tgfbr2b tgfbr2,LOC107730143,LOC107600517,LOC107551196,LOC107713826 other downstream 2501535 21849989 ~ 21872972 (+)

Expression


Co-expression Network