sema6e (sema6e,LOC107587820,LOC107741742,LOC107732474,LOC107597993,LOC107663405)


Basic Information

Item Value
gene id sema6e
gene name sema6e,LOC107587820,LOC107741742,LOC107732474,LOC107597993,LOC107663405
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 17997797 ~ 18122426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260764.1
GAGTTTTAGCGCAGTCTTGCTTTTTCATAGGCGTGTGTCAACTGTGTGTGCCAAGGGGTGCTCCGCTCTTACCAGTGCGATTAATGAACACAACGAACCAATTGAGGGAACACTAAACAACCAACCTGATTTTCCTTTTCGTCTGTTTAATACGGACGAGCTTCGCGTCCGCAAAGGAATCATCCCTCTGCACGAGCACAAAGGAAAATTTAAAAGGGAAGAAAAGgTCTGTCGTGAACTTCCTTAAGCTATCCTGCACTCCAGCACCCTCACCTTAATCACCCGACTGCGGTCCCGACGTCTGATTGGATCATCTTTTGAGgATCTTTCGTGAAAATCTCCATCTAACCTCGTGAACACCAGTGAGAGCCGAAGGGTTGAAACCGCTGCTCATCTTCTGCAAGGATAACAgTGGTGTTCTGTCTGCTCTGGGTCATGCTGTGTGGCTGACTTCTATGCTCTAGCTGAAATGAGGTTGGTGATTTTGGGGTCGCGGCCCCTCTTGGCCTTGACCCTCACACTCACCCTCACCTGCCTAAAACATCTGTGCCATGGTGCGACACCCTTTCCTCAGGACCTGGAGCCCATCAGCACTGTTGGTAGTGAacGCACCTACCTGTACCCCAGTTTCCAGGGGAACATGTCAGATAACGACACCGCCAGACTGGGGCTGGATTTTCAGAGGATGCTGCGGATTAACCACATGGTCTACATTGCTGCGAGAGATCACGTTTTTGCCATTAACCTCAGCGCTTCAGCGGAGCGTATCGTCCCCCAACAGAAACTGACATGGAAGACAAAGGATGTGGAGAAATGCACAGTCAGGGGGAAAAACAGCGATGAGTGTTACAACTACATCAAAGTGCTGGTGCCACGTAACGATGAAACTCTCTTTGCTTGTGGAACCAATGCGTTCAACCCCACATGTCGGAACTACAAGATGTCTTCTCTGGAGCAGGACGGAGAGGAGGTGCTCGGTCAAGCCCGTTGTCCTTTTGAATCCCGCCAGTCCAACGTTGGCCTGTTTGCCGGCGGTGACTTTTATTCAGCCACAATGACAGATTTTCTAGCAAGTGATGCAGTAATTTACCGAAGTTTAGGAGAAAGCAGTTCTGTCCTGCGCACCGTAAAATATGACTCAAAATGGCTACGAGAGCCTCATTTCCTTCATGCCATTGAGTATGGGAACTACATCTACTTCTTTCTCAGTGAGATTGCAGTAGAGTACACCACCCTTGGCAAGGTGGTGTTCTCTCGGGTTGCTCGCGTGTGCAAGAATGATAACGGCGGCTCTCCAAGAGTTCTAGAGCGCTACTGGACGTCTTTCCTGAAAGCCCGGTTAAACTGTTCAGTTCCGGGTGATTCATTTTTCTACTTTGACGTTCTTCAGTCATTAACCAATGTCATGCAGATCAACCACAGGCCTGCGGTGTTAGGCGTCTTTACCACTCAAGCCAACAGCATCACCGGTTCTGCCGTATGTGCGTTCTACATGGACGACATAGAAAAAGCGTTTAATGGGAAGTTTAAGGAGCAGCGAAACAGCGAATCCGCCTGGACGCCAGTTCCTGATGAACTGGTGCCCAAACCACGGTCAGCCGGGTCCTGTGCTGGTGATGGCCCTGCTGCTGGTTATAAGTCCTCCACAGATTTCCCTGATGAAACTCTTACATTCATTAAGTCTTATCCACTAATGGATGAGGCCGTGCCGTCTGTCAACAACCGACCCTGCTTCACACGAACCACCAGCAGGTTCAAGCTGACCCAGATCGCTGTGGACACAGCAGCTGGCCCATATAAGAACTACACCGTTCTGTTTCTGGGCTCAGAAAACGGACGAGTCCTAAAGATTCTCGCCAGCATGCACCCAAACTCCACCTACAGTACGCAGGTTTTGGAGGACATAGATGTTTACAACCCCAACAAGTGTAATGTGCGTGGTGAGGACCGAAGGATTCTGGGATTGGAGTTGGACAAGGATCATCATGCCCTGTTTGTGGCGTTTTCAAGTTGCGTGATCCGCGTTCCACTCAGTCGCTGTTCAGACTACGGCGTCTGCAAAAAgagcTGTCTGTCCTCGCGAGACCCTTACTGCATCTGGCTGAATGCGGGAAACTGTGCCACAGTGGCGCCAGGATTCAAGTCTGGATTTGAGCAGTATGTGGAGAGTGGATATCCTCAGTACCCAGACAGCTGTCATGATGTCTTGGCCACAACTCGCAAGCAGAACCCTGCGGTGGACTCGGCTTACGGAAAGACCTCACCCACAAGCGCCAGCACAACCAATCAGGGGCCAGCTCTGCCTAAAGTCAAGGCTGTCTCTGAGACAGGTACCCGCCCCGAGGAGGGGAGGCGGGGAGGGCAGGGTTCTCCTGACTTGAAGCCAGGCAGTGTGGAGATGGAGGGAGTGCGCCGACCCCCTGAGGTAGATAAGTCCAACCACAGTGTTCACTACACTCTGCTCATTGCGTGTGTCCTGGTGGCGTTTGTCCTGGGAGCTTTCCTCTCCGGCTTCCTCGTTTCCTGTTACTGCAATCACAACGTGAACAAGACCAAAAGGCTGTCGAAAGATCCAGAAGCACCAATCCCACATGCTTTATCCCTGCGCAGCCTGGCCAAGCTAAACGGCTTGCTGGAGACTCAAAACAAAGACGAGAAGCTGGAGGTGTCTTCACCCAAACTCTACAACTCTTTCTTTGCGAATGGAAAAGAGCAGGCACATCGCAGGAATGCCCATCATGCTGCCATGACAGAACTCATTCACCCACATCATCACCACTCCGCAGAGCTCTCCGGCCTTCCCACGCCTGATTCGACGCCAGAGCTTCCTATCAAGAGTATGAAAGCCTTTAAGAACCAATGGGAGAAGAATCAAAACTGCAATAATGCTAAAGAACCCAAGTCCCATAACATGGGAGCATCTCGGCCGAGCACTGGAATGCAGCATCAAATTTTCCCTTTCTCTCAAGGACTGACCAACGGACAAGTACTAGGCAGCTCGGCACACATGGAGGAGCGCAAAGTCCACAATGTGGAACGCATGGCAAGCCAGCCGTATCACTGCTACCCGCACAAGATTGTGGACGTTACCTCGCTCGATGAGCTTCTGAAACACATCCACGAAATCAACGTGGCTACGGGAAAGAGTCCTACAGTCCTCACCTCATCCATGTCAGCCAACGCAGGTCAGATGGCATTCGCAAACCGAGTGCAGCCACAGATACCAGAAACAGAGTCTGCACCGTACTACAGTTCCTCCACGCTTCCCAGGGACAGTCTAACTCGCCGCATGGACGTCCCACCAGAGATTCCTCCACATCATCAATCTACTCTAGAGAGAGTGTCCCGTCACCCGTCTCAACGCCACTCTTTGATAACCACTCCCAAGATGCCCAGCGGCGGTGTAGTTCCACGGCAGCACAGCTTCAACCAGCGTAGTGCCCATCAGCCCCTCCTGCTCTCTCGAATGAACTCTAACGGCAGCAGTTCGGGTTGCGACGTACGGCACCCACTCATCCCTAACGGATACCTAACTCGCCAACACAGCTACAGCGAGCAGCCAGAAGTCCACCGTGGAGCTATTGTCCGCCGGACAGCCTCGCTCAAGCCTGACGTCCCTCCCAAACCGCTGTTCATCCCTGCTAGCTCTCCTGTCAACCAGGCAGGGAAGTTCAACTACTGAACGATGGAGAAGAAAAGCCTGTGGTTTTTCGTAAAAAGGCTACACGACCCATCAGAACTGATTGTGGTCATGAACAATTAAAAGACTGGATGAAAAACTTGCctttataggaaaaaaaatcctctgGAGATTGGCTGCCAGTGTTGTCGAACTTTACATTTGAACTATgacttgtttttctctgtttcatGAATATATTTGTACCATATTGGTATTGCTCAGCTATTGGCCATTAGGAGAGGAGAAGTTACAGGAGTCCACCTAGATTTAGGCTGCCACAGTGATACGTGTGTGGCTTTATGGTGTTACTTTGGACTGTCTAGACAGGTGTCACTGATCCAAAACTCTGGACCTGAACTTTTATCCGAACAAGTGTACACACCTTGTTTGATATTCTGATCTTTCTTGCTTTGGCTTAACTATTCTGTTGATGTAGAGTTGATGAACTGTGCTGAATCCAattagaaatgtgtatatatgcatgcatgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtatatacatacctAGTGTATGTATCTAGATTACtgaaatggtttagccccctcCAGTTCCTTCGCCTTATTTTGAAAGCAGATGTGCTGTTGAAATTCCCACACAACTTGAAGTGATCTCTGTAAAATCCATAAGCAATAATCTCCAGCCCATCCTGTCCACTCCAGTGTAATGCAGTTATAACAACTCAAATTCATAGATCAAATTGAGATGATTAAAATGGCTAGAGAAACAGTTACATCTAAATGCTCGGGCCCAAGTGAGGTGAATAAGTCTTAGTGTTATAAAGGAGATGTATGTATATACCTAAGAAGAATGTATTCTTTGTCTATACGCTGCAGAATCAGTGTGAGGTGCTCCAGTATTTACTCTATGTCtctgttaaaatcatttaattggTGAAAGTGAATCCAAATTTTTTAATCTTACAGTGGAAACGTCAAACACTGTGTCCTATCCAGGCGCGATAAACCGATAAAACTATCTCTTCTATGTAAATCTTACGTTTTTGTCTTAAGCTATCTGTGATCACTTTGTGTTCTATTATATATAGCCTCACCCACAGTGAAATCCAGTCTAAACTTCTGCTCCATAATCATCATTGGCTCTGCCATGAAGCAGTCTGACACACTGAAACAGGTCGCACCTGAATAGGACACTGCATAAGAGTCCAGAACAAAAAGATTTCTTACTTTTGTCCTGAGTTATTCctatattatgttaaaatatatcgATATTAACACTAAAACtgttttgtgtaaatatatgaaCAATAACTAGCcaaattttaattgtttgtgtaAATTTGTGCCTTATTTAATATGATGTGTTAATGGGGGGAGGGTGGCGGCAGAATGGGAGAGGGGACATAAGAAAAGGGCAGAGAGGctgtcatttgtctttttttttaatatttgtattttttttaagcttggtTGTCTGTATGTCATAACTGTTGTAGATATATATTTCTAGATACTTTTGATATCCCCAGGCTGTGTGACGCTTTTGCATTTTGGAACAGCATCTACATAGTTTTCCCTCCAAAGAgacatctgtctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcgttctattaTTCTGTCATTCTTTCTATTGCCCAATCCATCACGCTGTGTGTCCTGTCTGTGTATTTCTTTGTCGATCGAGCAatcattctatctatcattctttctttctatcacTGTCTATCCTGTCTTTTGTTCTATGTATTGTTGCAAGATTTAtctctctttcttgctttcATGTTGAACACAGCATTAGTTTAAGAAACCTGTGTCTTCACAGACAGGTTTGTTCTGAAATGTATGAAGTAAGATGTATAAGATACGTGAACTTCTAAACTGCAGCGTATCTTCAGATCTTATGTTTAATGGAGAGAGCAAGACTTCTTAGGCTTTGCACTCTGTTTGGAGGAGAGACTTctgtgggtgggtgggtgggttggctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgtgtgcgcttGCTTCATGAGGATACCATATCAGTTGGCTGTAGTTCAAACACATACCTCCCTTTGCTTTTCCCCAGTTCTTCAGTCTGGCAGAGCAACTCAGAACAGTTCCTCTGCTCAAAgtcatcttcatcttcttcttcagtCTGTCTTAAGACTCTATGATGTGTCTGCTTTTGCATAAATTTTTGGTGCTGGTCTGAGATACAGTTTTTATCATGTACACTTGAATGAACCTTTCAAATTGGCTGCCTGTAACTGTGTGCTCTGTTGCCCCTCACAAAACCAAATGcaatgtcacattttaatagACGGCTACCACATCATATGCATCCCAGGTGGAAAATGGACTGAGGGTTCAATCCCCGCACCGTCCTCGACGGAAATCCAGAGCGTGGAGATCGAGTGGAAAGAGACTGGTGTAGTTTCTTTGAATTTCTATAGATATTATGATGGAAAGGGAACTGCGTGTGTCTGTTTTATCTGCTTTAACCATTGAGGTTTCTGTTATTGCACAGTGTAAATACAGTCCTGGAGTTTCCCAGGATTCAGTGCTCTGTTATGATTACTATTGGGCAAAGCCCTATGGATTCTCCACCTCTGCTTTTATGGAATACTGTTGTATTTTCcttataacagaaataaatgaaagatcataacatg

Function

symbol description
sema6e Enables chemorepellent activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in brain; lens; and solid lens vesicle. Orthologous to human SEMA6C (semaphorin 6C).

NR:

description
PREDICTED: semaphorin-6D-like isoform X1

GO:

id name namespace
GO:0050919 negative chemotaxis biological_process
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component
GO:0045499 chemorepellent activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260764.1 True 6420 mRNA 0.46 21 17997797 18122426

Neighbor

gene id symbol gene type direction distance location
lysmd1 lysmd1,LOC107741747,LOC107587824,LOC107597990,LOC107732482 coding upstream 114840 17879199 ~ 17882957 (+)
tmod4 tmod4,LOC107689841,LOC107663362 coding upstream 122046 17870834 ~ 17875751 (+)
vps72b vps72,si:ch211-203d17.1,LOC107689907 coding upstream 126855 17860939 ~ 17870942 (+)
mcl1b LOC107587828,LOC107741748,LOC107689846,LOC107732475,LOC107597989,LOC107663357 coding upstream 147363 17847984 ~ 17850434 (+)
LOC122359893 LOC107663319,LOC107587833,LOC107741753,LOC107689852,LOC107597987,LOC107597985,LOC107689850 coding upstream 192137 17801777 ~ 17805660 (+)
tmem79b tmem79b,LOC107741741,LOC107704887,LOC107587819,LOC107732471,LOC107597995 coding downstream 17490 18139916 ~ 18143979 (+)
pear1 pear1,LOC107741736,LOC107587815,LOC107704888,LOC107671660,LOC107597999,LOC107732476 coding downstream 37597 18160023 ~ 18194810 (+)
mc2r LOC107704892,LOC107741732,LOC107587907,LOC107598023,LOC107723103,LOC107672129 coding downstream 98605 18221031 ~ 18221936 (+)
fam210ab fam210ab,LOC107587812,LOC107704893,LOC107741733,LOC107723107,LOC107671697,LOC107598002 coding downstream 109618 18232044 ~ 18239325 (+)
scxb scxb,LOC107714619,LOC107704851,LOC107724780,LOC107672140,LOC107552813,LOC107576100 coding downstream 416837 18539263 ~ 18542637 (+)
LOC122359994 NA non-coding upstream 64320 17892970 ~ 17933477 (+)
G113882 NA non-coding upstream 106078 17891227 ~ 17891719 (+)
G113851 NA non-coding upstream 225873 17754254 ~ 17771924 (+)
G113850 NA non-coding upstream 244009 17752760 ~ 17753788 (+)
G113790 NA non-coding upstream 293048 17687840 ~ 17704749 (+)
G113942 LOC107587908,LOC100536175,LOC103025787 non-coding downstream 11460 18133886 ~ 18136989 (+)
G113954 lmna,LOC107741735,LOC107587813,LOC107704890,LOC107598000,LOC107671682,LOC107723101 non-coding downstream 76824 18199250 ~ 18200429 (+)
G113969 NA non-coding downstream 161728 18284154 ~ 18284764 (+)
G113988 NA non-coding downstream 198319 18320745 ~ 18377641 (+)
G114106 NA non-coding downstream 394192 18516618 ~ 18622406 (+)
ensab ensab,LOC107587831,LOC107741750,LOC107663348,LOC107597988,LOC107732479,LOC107689847,LOC108441925,LOC108268136 other upstream 150387 17841802 ~ 17847410 (+)
mettl25b rrnad1,LOC107689858,LOC107549245,LOC107587879 other upstream 260315 17732604 ~ 17737482 (+)
acbd7 acbd7,LOC107549230,LOC107717797,LOC107681577,LOC108440763 other upstream 590601 17400284 ~ 17407196 (+)
stx17 stx17,LOC107706149,LOC107723570,LOC107593691,LOC107657726 other upstream 1085916 16900668 ~ 16911881 (+)
sec61b sec61b,LOC107593687,LOC107723518,LOC107595994,LOC102796100 other upstream 1173814 16767060 ~ 16823983 (+)
G114131 NA other downstream 526119 18648545 ~ 18857430 (+)
LOC122360853 LOC107700173,LOC107717447,LOC107551678,LOC107723400,LOC107582047,LOC107671182 other downstream 553134 18675560 ~ 18680093 (+)
LOC122359904 psma2,si:rp71-45k5.4,LOC108440756,LOC103045926,LOC107686300,LOC107592434,LOC107714337,LOC107724313,LOC103023870,LOC108425697,LOC107653859,LOC107556413 other downstream 635879 18758305 ~ 18761771 (+)
LOC122360692 NA other downstream 686318 18808744 ~ 18821136 (+)
LOC122360132 NA other downstream 704828 18827254 ~ 18841584 (+)

Expression


Co-expression Network