si:ch211-225p5.8 (LOC107686707,LOC107592124,LOC107666781,LOC107719166,LOC107737837,LOC107600541)


Basic Information

Item Value
gene id si:ch211-225p5.8
gene name LOC107686707,LOC107592124,LOC107666781,LOC107719166,LOC107737837,LOC107600541
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20604089 ~ 20607902 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260848.1
TTGCGTGTTGAGTTGCGAGCCCAAGGATTCACACGGTCTATAGTTAGCTCTCCTAAACGTCGAAGTCTGCGGCACGACACGATCTCTTTCAGTGACGTGATAttattttcaaacttttaacGCGTTCCTTTAAATCACTCGAACGCCGGAGGGTTGCGTTTAAATGCGCGTTATTAGGAAAATCCATCGAAGAGCGCGAATGCCATGTGTTTTGGATTTAAAGTAAGAAAACCCGGGACTGTTATGGCCCAGCGATGTTTATGAAATTGCTTTAATGAGAGGAACGCGCTATTTCGAGGAAGCGATTTATCAACGCATCGGTTCATATAACTGTGTGAACTGAGAAAATGGCACTGGGAATGATTTCGTTTTTGGCTCTCTGCATCTTTTTTATTCAAGTGCCACAGGGCCAAACTGGATGTGCTGAAGTAGACTCCATGACAGAAGCTGTGGCTGGCGAAGGCTTTCTGCTGGGTTGCATTTCTTGCAAAAGGAGAGAAGAAGTTCCTGGTTCTGCTATTGTTGATTGGCACTACAAAGCAGCCGGATCTGAAGAGTTCATCCAGatttTTCAGTATGAATATAATAACCCCACTATTCTTCATGAAAACTTTGAGGGAAGATTAGAGTGGCAAGGAACTATGGGGACGAAGGATGTGCAGATTGGTTCGGTCTTTCTTCACAATGTGACGTATAATGACAGTGGGACTTACCTCTGTACCTTCCACCGAACGCTGTACCATGTTCTGGATGAGGTAGATGTGGTAATAACTAAAGAGGTGGAACTCACGGTTGTGGAAAAAGCAAACCCTGAGCTGACGGCTGTGATTTCTGAGATCATGATGTACGTGTTGATCGCAGTCCTGCAGCTGTGGATGATTGCAGTGCTGATTTACTGCTATAGGAAGATCTACGCTGAGAACGAAGCTCGAGAGGCCAGAAAAGCTGCACGCTCTCAAAGCAAACTTGTTGAATCGAAGGACCCTTGCGATggcatttatttggaataacTACAGTTTTGGTTGGTAGGCTTATTATTTGCAGTGAATAGAGACTAGGATTAGTAAATtattggtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgataaatattcttataaaaaaaagttcattcaaaaattaaaatcagctgaaaacttactcaccctcaggccatcaaaGATAtagataaatgtatatttatgtctTCACCTCATTCAGTTTAtgggaatgagagtccaaacattattttcatcagctgtttttcACCAAATATGCTTCAATGAAGACAAAAATGCACCTAGTGggtgagaaatgtttttttttttttttttgggtaaactatttctttaataataatgatgaagcCTCTGTATATTTCTAGTGACATTTCTACAGTAGCGAAGCACTGACTAAGCTAAAGCAGAATtcagcatgttttattcatacagcagtgaaaacaaatacaatattgTATTAATGAGACATTATATGCAAAATGGAATCACTATAAAGGTTCTgaataaatagacattttacaagggatagttcacccataaataaaactcatcctcatgttgttccaaacctacaTGATCTTCgttcatctttagaacacaaactaaatattttttaggaaTTTTATGATAAAATCCAAGAACTCTAGTGCCGTTTTGGAGAGCATCATGAAGCATGTGCATATTTTGATCTGCATGTAAACAGTGGAGGCAGAACATATGCACCTTTTTTGCGTGTAGATAAGAGCATGCACATGATTCTCTTCAAAATGCCTCTCCAGAGtgaagcagaagaagaaaattgtagaataaagctgttatttttgttttctatgtgcacaaaaagtatttttgtagcttTGTACACGTTTGCAAACGTgtattacggttgaaccactgatgccacatggactattttagcAATGTCCTTGCTACACTTCTGGGTCTAGGAACCGTTCAGTTAAGTTACTGTCTGAGGAGGGTCAAGCTCTCggattttaacaaaatatcttaatttgtgttccgaagatgaagaAAGGTctcatgggtttggaacgacatgaagggtgagacatttatttttgggtgatttATCCCTTTAACTGTGAATTACACCAGCCTGAAGAAATTGAAATGgtttgcttgtttattgaacGGTGATTAAAAGATAAGTTGGCAAAGACAAGAATTTGTCATCTTAGGTTAGCAAGCAAGATTTTGGATGCACCCTTtcttgtttgcaaaaaaaaatgtaggggAAACAACATTCGAATTTCaggcattaaaacatttaaaacgttTAAA

Function

NR:

description
sodium channel subunit beta-1-like isoform X2

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0017080 sodium channel regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260848.1 True 2359 mRNA 0.37 5 20604089 20607902

Neighbor

gene id symbol gene type direction distance location
fli1rs fli1b,LOC107600493,LOC107719147,LOC107666785,LOC107685964,LOC107592185 coding downstream 11262 20580282 ~ 20592827 (-)
si:ch211-215k15.4 LOC107666815,LOC107600540,LOC107719123 coding downstream 212223 20389474 ~ 20391866 (-)
pkdc si:ch211-215k15.5,LOC107737834,LOC107592943,LOC107686716 coding downstream 216473 20386077 ~ 20387616 (-)
herpud2 herpud2,LOC107686057,LOC107600485,LOC107719122,LOC107592253,LOC107737813 coding downstream 218633 20379180 ~ 20385456 (-)
dpy19l1l dpy19l1l,LOC107666881,LOC107719125,LOC107592414,LOC107737812,LOC107686065,LOC107592262 coding downstream 290850 20305818 ~ 20313239 (-)
mtdhb LOC107666798,LOC107717360,LOC107600499,LOC107668302,LOC107592090 coding upstream 73523 20681425 ~ 20686877 (-)
ubxn11 LOC107600501,LOC107592913,LOC107713843,LOC107668295 coding upstream 92095 20699997 ~ 20706330 (-)
aste1a LOC107666773,LOC107717364,LOC107600542 coding upstream 129047 20736949 ~ 20741672 (-)
si:dkey-11p23.7 si:dkey-11p23.7,LOC107717350,LOC107666731,LOC107600543 coding upstream 156736 20764638 ~ 20767365 (-)
LOC122360416 nek11 coding upstream 218326 20826228 ~ 20866224 (-)
G114888 NA non-coding downstream 26815 20576686 ~ 20577274 (-)
G114853 NA non-coding downstream 83963 20500520 ~ 20520126 (-)
G114804 NA non-coding downstream 117962 20485895 ~ 20486127 (-)
G114803 NA non-coding downstream 118364 20485396 ~ 20485725 (-)
G114801 NA non-coding downstream 120018 20483801 ~ 20484071 (-)
G114908 NA non-coding upstream 69152 20677054 ~ 20680221 (-)
G114924 NA non-coding upstream 116269 20724171 ~ 20725671 (-)
G114943 NA non-coding upstream 160842 20768744 ~ 20769087 (-)
G114947 NA non-coding upstream 173901 20781803 ~ 20835235 (-)
G114997 NA non-coding upstream 510247 21118149 ~ 21120584 (-)
G114793 NA other downstream 151639 20441965 ~ 20452450 (-)
G114715 NA other downstream 426331 20166795 ~ 20177758 (-)
dpys dpys,LOC107728457,LOC107686378,LOC107666745 other downstream 946365 19596432 ~ 19657724 (-)
cd22 LOC107728466,LOC107592448,LOC107666891,LOC107709614,LOC107686701 other downstream 1182995 19416962 ~ 19421094 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other downstream 1782979 18812238 ~ 18821110 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other upstream 28223 20636125 ~ 20650937 (-)
G114901 NA other upstream 44075 20651977 ~ 20653574 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other upstream 404705 21012607 ~ 21017105 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 767988 21375890 ~ 21378836 (-)
mettl6 mettl6,LOC107600537 other upstream 802057 21409959 ~ 21411772 (-)

Expression


Co-expression Network