ctps1b (ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321)


Basic Information

Item Value
gene id ctps1b
gene name ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24839929 ~ 24846153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261006.1
GTTAAACGCGGCATCGGATTCCACAccacgtgttgttttggcgctTTACCGCATTTCGCTGACACCCAAACAAACGTGTCTCGAAGATGGCTCGTGCGTCGTGAATCGGTTGGTGTTTTTAATCTACGGTTTTATATGTTTGAACTGCAAGAATTCAGACGCTGTTGAATAATGAAGTACATACTGGTGACAGGCGGTGTGATATCCGGTATTGGGAAAGGAATCATAGCCAGCAGTGTGGGGACTATACTCAAATCATGTGGCCTGCATGTCACTGCTATCAAAATCGACCCCTACATCAACATCGATGCGGGCACTTTCTCTCCCTATGAACATGGTGAAGTGTTTGTGCTGGATGATGGCGGTGAAGTGGACTTGGATTTAGGGAACTATGAACGTTTTCTTGACATCCGGCTAACAAGGGACAACAATCTGACGACGGGGAAGATCTATCAGTCTGTTATAAACAAGGAGAGGAGAGGGGACTACTTGGGCAAAACTGTACAAGTGGTACCACACATTACCGATGCTATACAGGAATGGGTCATGCGGCAGGCTAAGGTCTCAGTGGATGATGACGGTATTGAACCAGAAGTCTGTGTCATTGAGCTTGGAGGTACAGTCGGAGATATTGAGAGTATGCCTTTCATTGAAGCTTTCAGACAGTTTCAGTTTAAAGTCAAGCGGGAGAATTTTTGTAACATCCATGTCAGTCTTGTACCTCAgCCCAATTCAACAGGAGAACAGAAAACCAAACCCACACAGAACAGTGTTCGGGAGCTTCGTGGACTTGGCCTGTCACCTGATCTCATTGTTTGTCGTTGCTCCACTCCATTGGACACCGCAGTGAAGGAGAAGATCTCCATGTTTTGCCATGTAGAACCTGAACAGGTGATCTGCATACATGATGTGTCCTCCGTCTACAGAGTACCTCTACTCCTGGAGGATCAGGGCATGGTTGACTACTTCTGCCGTAGACTGGACCTGCCCATTGAGATGAGGCCTCGCAAAATGCTCACAAAATGGAAGGAGATGTCAGACCGATCCGACCGACTCCTGGAGCAAACCTCCATTGCTTTAGTAGGCAAGTACACCAAACTTTCAGATTCATACGCCTCGGTTATTAAAGCACTGGAGCACTCTGCCCTCTCCATCAACTATAAGCTAGAGGTCAAGTACATCGATTCGGCAGACCTGGAGCCATCAGCGTTGCAGGATGAGCCGGTGAAGTACCATGAGGCTTGGCAGAAGCTCTGCAGTGCTGATGGGGTTCTTGTTCCTGGAGGCTTTGGTGTGCGAGGCACTGAGGGAAAAATCCAAGCTATTAACTGGGCGAGGAGACAGAAGAAGCCATTTTTAGGTGTTTGTTTGGGCATGCAGCTGGCAGTGTGTGAATTTGCTCGTAATGTACTTGGCTGGGAAGATGCCAATTCTACAGAATTTGACCCTGAAACAAAACATCCAGTGGTGATTGAAATGCCCGAGCACAATCCAGGGCAGATGGGAGGAACCATGCGACTGGGGAAAAGGCGCACCTTATTCAGAAGCACCACCAGCTTTCTTCGAAAGCTGTACGGAGAGGCTGAATATGTGGATGAAAGGCATCGACATCGCTTTGAGgTGAATCCAGAATTGAAGCAGCACTTCGAGGATAGAGGTTTTCGGTTTGTGGGTCAGGACCTAGAAGGGGAGCGAATGGAGATAATTGAACTCGAAGATCACCCTTATTTTGTCGGAGTGCAATACCACCCAGAATTCACTTCTCGCCCCATCAAACCCTCACCTCCTTATTTTGGCCTTCTACTGGCAGCATCTGGGAAACTACAGAACTACTTACAAAAAGGATGCCGGCTCTCACCTCGGGACACATACAGTGACCGAAGTGGCAGTAGTTCACCAGACTCGGAGATATCTGAAATCAAATTCCCATCACTTTCTTAAAgtgcaaatacacacataatcatgaaaaaaaaaaaactttcatgacatgaatttgtttgaataaattaataaaagtta

Function

symbol description
ctps1b Predicted to enable CTP synthase activity and identical protein binding activity. Acts upstream of or within notochord development. Predicted to be active in cytoophidium and cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in immunodeficiency 24. Orthologous to several human genes including CTPS1 (CTP synthase 1).
ctps1 Enables CTP synthase activity and identical protein binding activity. Involved in B cell proliferation; CTP biosynthetic process; and T cell proliferation. Located in cytoophidium. Implicated in immunodeficiency 24. Biomarker of biliary tract benign neoplasm.

NR:

description
PREDICTED: CTP synthase 1-like isoform X1

GO:

id name namespace
GO:0044210 'de novo' CTP biosynthetic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0003883 CTP synthase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K01937 pyrG, CTPS; CTP synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261006.1 True 2019 mRNA 0.47 17 24839929 24846153

Neighbor

gene id symbol gene type direction distance location
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding downstream 142 24836086 ~ 24839787 (-)
ptprub ptprub coding downstream 31259 24626594 ~ 24808670 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding downstream 409043 24372103 ~ 24430886 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding downstream 523797 24311489 ~ 24316132 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding downstream 641275 24196697 ~ 24198654 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding upstream 46693 24892846 ~ 24906521 (-)
eva1ba eva1ba,LOC107700680,LOC107556086,LOC107734091 coding upstream 174563 25020716 ~ 25033341 (-)
stk40 stk40,LOC107704982,LOC107755633,LOC107588492,LOC107705547 coding upstream 207545 25053698 ~ 25071225 (-)
oscp1b oscp1b,oscp1,LOC107588491,LOC107705542,LOC107704985,LOC107755648,LOC107700711 coding upstream 226726 25072879 ~ 25080305 (-)
LOC122360438 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 coding upstream 234304 25080457 ~ 25082777 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 4565 24835099 ~ 24835364 (-)
G116179 rab42 non-coding downstream 5971 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 16519 24821501 ~ 24823410 (-)
G115954 NA non-coding downstream 651335 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 762062 24077631 ~ 24077867 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 233114 25079267 ~ 25082596 (-)
G116242 NA non-coding upstream 331299 25177452 ~ 25178607 (-)
G116237 NA non-coding upstream 365240 25211393 ~ 25558018 (-)
G116264 NA non-coding upstream 847956 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 858547 25704700 ~ 25706796 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 366564 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 470363 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 500141 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1164584 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1230088 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 818566 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1533519 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1575565 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1960967 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1964164 26810317 ~ 26812974 (-)

Expression


Co-expression Network