LOC122360523 (rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585)


Basic Information

Item Value
gene id LOC122360523
gene name rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25206296 ~ 25213787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261196.1
CTGACGTCAGATCCAGTCATCCGATCCGTCATCATCAGTTTTGATGCAAAAGGGGAAGTTGGGAGGAACCGAGAGGAAGATCTGGGAGTGACCGTTTGAGAAGCACCTCTTGACTTCAGTACAGGAGATTGGGGCTTAGGGTCATGGCAGGAAGAGGTGGAGCAACAAGACCTAACGGGCCGAACGCCGGCAACAAAATCTGTCAGTTCAAACTAGTGCTCTTGGGGGAGTCTGCTGTGGGGAAGTCAAGTCTAGTCCTTCGTTTTGTAAAAGGACAGTTTCACGAGTTTCAGGAAAGCACAATAGGCGCTGCCTTCTTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCCGGCCAGGAACGCTACCACAGTCTGGCCCCAATGTATTACAGAGGAGCACAGGCTGCCATAGTGGTGTATGACATTACAAATGAAGAATCATTTGCACGTGCAAAAAACTGGGTGAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAgctttggctggaaacaaggcAGACCTTGCCAACAAGAGAGCGCTGGACTTTCAGGATGCACAGTCATATGCAGATGACAACAGTTTGCTCTTTATGGAAACATCGGCAAAGACTTCAATGAACGTGAATGAGATTTTTATGGCCATTGCAAAGAAACTACCCAAGAATGAGCCCCAGCCTGCAGGTGCCAACACAGGACGCAACAGAGGTGTGGATCTAACAGAAACGGCACAGCCTGCGAAAGGTCCCTGCTGTAGCAACTAAACAGCGATGGTCCTCACCTCCTAACCAACCGCATCACATCTGGACATGGGGCTCCTCCTTCCAAACCTCGCTCCTTGGATTAGCTAAAGACTCTGTATAGCTGTGTttctaatacttttttttttttttttttttatttttaagaaaaaaatgtaaatcagcaGTCTACTGGATGCATGTATCACTACAAAtgctaaatacacattttaacttaattcaGCAGGAGAACAAACCCGGATGaaagcgtgagagagagagagagagagagagagagagagagagtgaaatattgagtgtgtttgtatgagTTTAGTATGTGGAACTGATTATAACCTTATAACCAGGCCCAGGCGCAATCTGCAGATTAAAACAATGTGTTAAACAAAGCTATCCTTAGTGGTAACTGTAAGCATAATCAAATTTAGCAAACTAATAAACCTCATGAATGCATTACAGTTCTGTGGAAATCTGCATGCAGATTTCGTGTAGGCCTGTTTATGAATCAAATTTGAATCGGagaaagagttcaagaagttgGTTTCTGGTTGTAGTTTGGATGCAGTAGCTTCATATTCTGGTTAGGCATTCCTCAATGCACCCGCTGTGTCCTTAGTACACCACATATTGCAGTATGGCCATGatgatattgaaaatattgGGCCTTCAGGAGCATGACTCAAAGTCATCCAGCTCTTTGGCAGAAGGGATCTTACAAATGGCTTGGCGAATCGATATTGTCTTTCGGGATAAAGAACAAATCAAGGAACACAGTTGGTAAAACATGTTCAGCCTGCTGTAtgaatgatgattattattaattaggaCTGTATTGTCATTTCTGTGTTATGCTTATACACTTATTGCCAGGCCCAGATGGACTCCTTTCTGGGGTAAAATCTACTGAACTCCATTGGTAGctgtgcatattaaaaaaaaatgtgcaaaagtatttatttaaaaaaacgtatggGGAGGTGCATGCAAGCTTCTTTCagcccacaaaaaaaaatttcaagatctgaaaaaataaatctgagatggtctcataattctgacttttctcacAACTGAGTTAGACTCGCATTACTGAAAAAAGCATTTAGAATTTTGACTCTTTGTTGCAATTCCAAGTTCATACAGTCAACgtctgaagtggatcaaaaagtTGTCATAAAACAAGAACgctttttggttttaggttttgatccacttcaaatgttgccGACTGTATTCGCAGTAGTTTCTTTGCATTCTGACTTTTCTTCCTTTTCACAATTCTAGCTTCGTTTCCCTCTGAACTGCAAATTTATGTCTCGTAATTACGGGTTGATATTTGACAGTTCTGACTTTTCAGAGTCGTCTGAATTGTTTTTGcataggcaaaaaaaaacatatgtgaGCAAAATTTGCtgttaccttttatttttttttttatcccatggCGGAGAAGCTTGCATGTGTAAAAGTGTGATCATTTGAGTCGTGCACAATTCCTATGTGGGCCTGGTaattatcaatttaaaaaacaaacaaaaaaaaaatcacttttcagACATGTCCAGGAATCTTTCTCTgctattttttatgtaatcttACTGGAAGTCATGAGCAAACTGGAAGCGCCTGATTATGTCGGTGATGCAGTGCAGTTTTGTGTTGACACATGTACTCTGAAGACTAAAGGCGTGTGTTTGTGGGCAGATTTAAATGATACCTGCTGTCAGACAAAAGACTTGGTGAGAGCTTTTGCTTCAAAACATGATCTTTCACCGTTTTTGTGGGCATGTCTGCATCATTTAGGTGTGCCTGCCGTGACGGACAGTATTTTGCACACTGTACAGCCTCTCATAAATCCTACTACCAGTTTGAAGTTTCTTTTAACGGAGAATCATGTTTAAATGGTGGTCTTTTTAATGTACGTAGTGTTATTAACAAACAAACTTGACATTTAGTCAGTGGTCTGTCTTGTACCTTCTCTGAAAATgctcaatgtttttatttctaagaACCTATTGAATTGCACAATTTTGagttgctttttattattattattattattattatataaattgtgGCTGCCTGTCGTATCCAAAATGATTTAATCATGGATTACAGTGGACATATAACGCTCCTGAAGTACCACAGGTAGCTAGTAAACTTAACTGGCAGACGTTCAATAAACCAAACAGATTCAGCGGCGTTATGCATTAACACTGAGGgactgatacatttttaatgtccaGGTACTAGTATATTTCCAATAAAGGGGGTGAATTGTA
>XM_043261197.1
CTGACGTCAGATCCAGTCATCCGATCCGTCATCATCAGTTTTGATGCAAAAGGGGAAGTTGGGAGGAACCGAGAGGAAGATCTGGGAGTGACCGTTTGAGAAGCACCTCTTGACTTCAGTACAGGAGATTGGGGCTTAGGGTCATGGCAGGAAGAGGTGGAGCAACAAGACCTAACGGGCCGAACGCCGGCAACAAAATCTGTCAGTTCAAACTAGTGCTCTTGGGGGAGTCTGCTGTGGGGAAGTCAAGTCTAGTCCTTCGTTTTGTAAAAGGACAGTTTCACGAGTTTCAGGAAAGCACAATAGGCGCTGCCTTCTTGACTCAGACAGTATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCCGGCCAGGAACGCTACCACAGTCTGGCCCCAATGTATTACAGAGGAGCACAGGCTGCCATAGTGGTGTATGACATTACAAATGAAGATGCACAGTCATATGCAGATGACAACAGTTTGCTCTTTATGGAAACATCGGCAAAGACTTCAATGAACGTGAATGAGATTTTTATGGCCATTGCAAAGAAACTACCCAAGAATGAGCCCCAGCCTGCAGGTGCCAACACAGGACGCAACAGAGGTGTGGATCTAACAGAAACGGCACAGCCTGCGAAAGGTCCCTGCTGTAGCAACTAAACAGCGATGGTCCTCACCTCCTAACCAACCGCATCACATCTGGACATGGGGCTCCTCCTTCCAAACCTCGCTCCTTGGATTAGCTAAAGACTCTGTATAGCTGTGTttctaatacttttttttttttttttttttatttttaagaaaaaaatgtaaatcagcaGTCTACTGGATGCATGTATCACTACAAAtgctaaatacacattttaacttaattcaGCAGGAGAACAAACCCGGATGaaagcgtgagagagagagagagagagagagagagagagagagtgaaatattgagtgtgtttgtatgagTTTAGTATGTGGAACTGATTATAACCTTATAACCAGGCCCAGGCGCAATCTGCAGATTAAAACAATGTGTTAAACAAAGCTATCCTTAGTGGTAACTGTAAGCATAATCAAATTTAGCAAACTAATAAACCTCATGAATGCATTACAGTTCTGTGGAAATCTGCATGCAGATTTCGTGTAGGCCTGTTTATGAATCAAATTTGAATCGGagaaagagttcaagaagttgGTTTCTGGTTGTAGTTTGGATGCAGTAGCTTCATATTCTGGTTAGGCATTCCTCAATGCACCCGCTGTGTCCTTAGTACACCACATATTGCAGTATGGCCATGatgatattgaaaatattgGGCCTTCAGGAGCATGACTCAAAGTCATCCAGCTCTTTGGCAGAAGGGATCTTACAAATGGCTTGGCGAATCGATATTGTCTTTCGGGATAAAGAACAAATCAAGGAACACAGTTGGTAAAACATGTTCAGCCTGCTGTAtgaatgatgattattattaattaggaCTGTATTGTCATTTCTGTGTTATGCTTATACACTTATTGCCAGGCCCAGATGGACTCCTTTCTGGGGTAAAATCTACTGAACTCCATTGGTAGctgtgcatattaaaaaaaaatgtgcaaaagtatttatttaaaaaaacgtatggGGAGGTGCATGCAAGCTTCTTTCagcccacaaaaaaaaatttcaagatctgaaaaaataaatctgagatggtctcataattctgacttttctcacAACTGAGTTAGACTCGCATTACTGAAAAAAGCATTTAGAATTTTGACTCTTTGTTGCAATTCCAAGTTCATACAGTCAACgtctgaagtggatcaaaaagtTGTCATAAAACAAGAACgctttttggttttaggttttgatccacttcaaatgttgccGACTGTATTCGCAGTAGTTTCTTTGCATTCTGACTTTTCTTCCTTTTCACAATTCTAGCTTCGTTTCCCTCTGAACTGCAAATTTATGTCTCGTAATTACGGGTTGATATTTGACAGTTCTGACTTTTCAGAGTCGTCTGAATTGTTTTTGcataggcaaaaaaaaacatatgtgaGCAAAATTTGCtgttaccttttatttttttttttatcccatggCGGAGAAGCTTGCATGTGTAAAAGTGTGATCATTTGAGTCGTGCACAATTCCTATGTGGGCCTGGTaattatcaatttaaaaaacaaacaaaaaaaaaatcacttttcagACATGTCCAGGAATCTTTCTCTgctattttttatgtaatcttACTGGAAGTCATGAGCAAACTGGAAGCGCCTGATTATGTCGGTGATGCAGTGCAGTTTTGTGTTGACACATGTACTCTGAAGACTAAAGGCGTGTGTTTGTGGGCAGATTTAAATGATACCTGCTGTCAGACAAAAGACTTGGTGAGAGCTTTTGCTTCAAAACATGATCTTTCACCGTTTTTGTGGGCATGTCTGCATCATTTAGGTGTGCCTGCCGTGACGGACAGTATTTTGCACACTGTACAGCCTCTCATAAATCCTACTACCAGTTTGAAGTTTCTTTTAACGGAGAATCATGTTTAAATGGTGGTCTTTTTAATGTACGTAGTGTTATTAACAAACAAACTTGACATTTAGTCAGTGGTCTGTCTTGTACCTTCTCTGAAAATgctcaatgtttttatttctaagaACCTATTGAATTGCACAATTTTGagttgctttttattattattattattattattatataaattgtgGCTGCCTGTCGTATCCAAAATGATTTAATCATGGATTACAGTGGACATATAACGCTCCTGAAGTACCACAGGTAGCTAGTAAACTTAACTGGCAGACGTTCAATAAACCAAACAGATTCAGCGGCGTTATGCATTAACACTGAGGgactgatacatttttaatgtccaGGTACTAGTATATTTCCAATAAAGGGGGTGAATTGTA

Function

symbol description
rab5ab Predicted to enable GTPase activity. Acts upstream of or within several processes, including Spemann organizer formation; epiboly involved in gastrulation with mouth forming second; and nodal signaling pathway. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-5A isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261196.1 True 3073 mRNA 0.40 6 25206296 25213787
XM_043261197.1 False 2950 mRNA 0.40 5 25206296 25213787

Neighbor

gene id symbol gene type direction distance location
decr1 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding upstream 28437 25172575 ~ 25177859 (+)
col6a4a LOC107704846,LOC107705786,LOC107588488 coding upstream 44650 25136936 ~ 25161646 (+)
sh3bp5b sh3bp5b,LOC107705532,LOC107588490,LOC107755668,LOC107700710,LOC107704986,LOC107556100 coding upstream 99837 25093181 ~ 25106459 (+)
sh3d21 LOC107588495,LOC107705578,LOC107700715,LOC107556095 coding upstream 186847 25007746 ~ 25019449 (+)
thrap3a LOC107705588,LOC107704980,LOC107588494 coding upstream 198997 24968186 ~ 25007299 (+)
efhb efhb,LOC107671426,LOC107688256,LOC107743149 coding downstream 86472 25300259 ~ 25312298 (+)
ube2e2 ube2e2,LOC103388353,LOC108256709,LOC103027361,LOC102233395,LOC108243292,LOC103357958,LOC108410980,LOC103477709 coding downstream 461923 25675710 ~ 25698512 (+)
nr1d2a LOC107568872,LOC107688200,LOC107707640,LOC107728981,LOC107671434,LOC107592106 coding downstream 490076 25703863 ~ 25712116 (+)
LOC122360719 NA coding downstream 538478 25752265 ~ 25774002 (+)
LOC122360721 NA coding downstream 562969 25776756 ~ 25778406 (+)
G116082 NA non-coding upstream 120931 25085022 ~ 25085365 (+)
G116072 NA non-coding upstream 135919 25067398 ~ 25070377 (+)
G116048 NA non-coding upstream 315734 24890275 ~ 24890562 (+)
G116043 NA non-coding upstream 319941 24885714 ~ 24886355 (+)
G116039 NA non-coding upstream 361166 24843422 ~ 24845130 (+)
G116101 NA non-coding downstream 78424 25292211 ~ 25323742 (+)
G116120 NA non-coding downstream 91974 25305761 ~ 25308931 (+)
G116136 NA non-coding downstream 487429 25701216 ~ 25701429 (+)
G116137 NA non-coding downstream 487696 25701483 ~ 25702533 (+)
G116143 NA non-coding downstream 517399 25731186 ~ 25731651 (+)
G116057 NA other upstream 149128 25003262 ~ 25057168 (+)
LOC122360598 NA other upstream 373678 24773819 ~ 24832618 (+)
cnr2 LOC107716825,LOC107587892,LOC107704869,LOC107700673,LOC107597120 other upstream 1383850 23815924 ~ 23822446 (+)
tstd3 si:dkey-165n16.1,LOC107700689,LOC107704863,LOC107716817,LOC107587896,LOC107711730 other upstream 1593903 23609448 ~ 23612393 (+)
LOC122360149 LOC107704935,LOC107716843,LOC107587775,LOC107552833,LOC107700676,LOC107711721 other upstream 1847517 23274989 ~ 23358779 (+)
G116099 rab5a,LOC103388351,LOC105904716,LOC101157247,LOC108411561 other downstream 339076 25552863 ~ 25554807 (+)
G116141 usf2,LOC107688254,LOC107707624,LOC107671406,LOC107568863,LOC107552520 other downstream 504733 25718520 ~ 25778407 (+)
hmgn2 NA other downstream 998945 26212732 ~ 26215779 (+)
G116445 ubr5 other downstream 1627593 26841380 ~ 26842025 (+)
G116459 LOC102223539,LOC107092448,LOC103472369,LOC102305030,LOC102207943,LOC100703061,LOC104937165 other downstream 1681651 26895438 ~ 27171468 (+)

Expression


Co-expression Network